Clone Name | rbart09b09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | RRPL_RVFVZ (P27316) RNA-directed RNA polymerase (EC 2.7.7.48) (L... | 28 | 4.9 | 2 | DPO1_KLULA (P09804) DNA polymerase (EC 2.7.7.7) | 28 | 8.4 |
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>RRPL_RVFVZ (P27316) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)| Length = 2149 Score = 28.5 bits (62), Expect = 4.9 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +1 Query: 70 RAGKQHTK*IWTC*TSFSGTKWN*STFV 153 RA KQ +WTC TS KWN FV Sbjct: 974 RARKQCKGPVWTCATSDDARKWNQGHFV 1001
>DPO1_KLULA (P09804) DNA polymerase (EC 2.7.7.7)| Length = 995 Score = 27.7 bits (60), Expect = 8.4 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -3 Query: 134 HFVPEKEVQQVQIHLVCCLPALFH 63 +F PEKE QV I +CC +++ Sbjct: 368 YFDPEKESNQVNIPFICCASIIYN 391 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,569,066 Number of Sequences: 219361 Number of extensions: 496292 Number of successful extensions: 865 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 862 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 865 length of database: 80,573,946 effective HSP length: 49 effective length of database: 69,825,257 effective search space used: 1675806168 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)