ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RRPL_RVFVZ (P27316) RNA-directed RNA polymerase (EC 2.7.7.48) (L... 28 4.9
2DPO1_KLULA (P09804) DNA polymerase (EC 2.7.7.7) 28 8.4

>RRPL_RVFVZ (P27316) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 2149

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 70   RAGKQHTK*IWTC*TSFSGTKWN*STFV 153
            RA KQ    +WTC TS    KWN   FV
Sbjct: 974  RARKQCKGPVWTCATSDDARKWNQGHFV 1001



to top

>DPO1_KLULA (P09804) DNA polymerase (EC 2.7.7.7)|
          Length = 995

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 134 HFVPEKEVQQVQIHLVCCLPALFH 63
           +F PEKE  QV I  +CC   +++
Sbjct: 368 YFDPEKESNQVNIPFICCASIIYN 391


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,569,066
Number of Sequences: 219361
Number of extensions: 496292
Number of successful extensions: 865
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top