ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09b08 |
|---|---|
| Clone Library Name | barley_pub |
>EXPL1_ARATH (Q9LZT4) Expansin-like 1 precursor (AtEXPL1) (At-EXPL1)| (Ath-ExpBeta-2.1) Length = 265 Score = 72.8 bits (177), Expect = 4e-13 Identities = 30/45 (66%), Positives = 35/45 (77%) Frame = -2 Query: 471 YDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPCDTHEW 337 YDGK +W+ + VLP W AG++YD GVQITDIAQEGC PCD H W Sbjct: 221 YDGKMIWS-QSVLPSNWEAGKIYDAGVQITDIAQEGCDPCDAHIW 264
>EXPL2_ARATH (Q9SVE5) Expansin-like 2 precursor (AtEXPL2) (At-EXPL2)| (Ath-ExpBeta-2.2) Length = 265 Score = 72.4 bits (176), Expect = 5e-13 Identities = 32/45 (71%), Positives = 34/45 (75%) Frame = -2 Query: 471 YDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPCDTHEW 337 YDGK VW+ R VLP W AG+ YD GVQITDIAQEGC PCD H W Sbjct: 221 YDGKMVWSQR-VLPANWEAGKSYDAGVQITDIAQEGCDPCDDHIW 264
>EXPL3_ARATH (Q9LZT5) Expansin-like 3 precursor (AtEXPL3) (At-EXPL3)| (Ath-ExpBeta-2.3) Length = 263 Score = 62.0 bits (149), Expect = 7e-10 Identities = 29/45 (64%), Positives = 32/45 (71%) Frame = -2 Query: 471 YDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPCDTHEW 337 YDGK VW+ R VLP W +G +YD GVQITDIAQEGC C H W Sbjct: 220 YDGKTVWSKR-VLPANWNSGRIYDAGVQITDIAQEGCDTCG-HIW 262
>Y1966_DEIRA (Q9RT03) UPF0124 protein DR1966| Length = 253 Score = 30.0 bits (66), Expect = 3.1 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +1 Query: 283 GSMLAIVCLFTIPDLLSPPLVGV--AREAALLRDIGDLDPRVVDLA---GAPPSRQHLAV 447 G +LAI P LL+ P GV A A +G + R V+ GA P R H AV Sbjct: 96 GVLLAIGTADCYPLLLADPEAGVIGAAHAGWKGTVGRIGQRTVEQMVNLGARPERIHAAV 155 Query: 448 GP 453 GP Sbjct: 156 GP 157
>PI5K1_ORYSA (Q6EX42) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC| 2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) Length = 801 Score = 29.6 bits (65), Expect = 4.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -2 Query: 465 GKWVWADREVLPRRWRAGEVYDTGV 391 GK+ WAD V RW++G++ +GV Sbjct: 146 GKYTWADGNVYIGRWKSGKMNGSGV 170
>GBRE_HUMAN (P78334) Gamma-aminobutyric-acid receptor epsilon subunit precursor| (GABA(A) receptor) Length = 506 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = -3 Query: 317 IVNKQTIANMEPKKMLLLAPRFGRATHARTKDRSTA---PHQTGEVISLVSHE 168 ++ QT A+ PK L PR HART+ RS A HQ V +V+ E Sbjct: 364 LIYNQTKAHASPK---LRHPRINSRAHARTRARSRACARQHQEAFVCQIVTTE 413
>KPRS_VIBVY (Q7MMZ1) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 314 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 319 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 408 P ++SP L GV R A + +GD+D +VD Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193
>KPRS_VIBVU (Q8DFF5) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 314 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 319 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 408 P ++SP L GV R A + +GD+D +VD Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193
>KPRS_VIBPA (Q87RN8) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 314 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 319 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 408 P ++SP L GV R A + +GD+D +VD Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193
>KPRS_VIBCH (Q9KQ22) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 314 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 319 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 408 P ++SP L GV R A + +GD+D +VD Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193
>MKC1_CANAL (P43068) Mitogen-activated protein kinase MKC1 (EC 2.7.11.24) (MAP| kinase MKC1) Length = 501 Score = 28.9 bits (63), Expect = 6.9 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 277 FFGSMLAIVCLFTIPDLLSPPLVGVAREAALLRDIGDLDPRVVDLAGAPPSRQH 438 FF I CL+ + D++ P+ G E L ++ + D + +G P S QH Sbjct: 98 FFRGHKNITCLYDL-DIIPNPMTGEFNEIYLYEELMECDMHQIIRSGQPLSDQH 150
>R1B12_SOLDE (Q6L3Z4) Putative late blight resistance protein homolog R1B-12| Length = 1296 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +2 Query: 197 LSGVVLCCDPSCVRA*PGQNEEPEAASSSAPCWRSFVCLLSPIC 328 L+ +V DPS + PG NE+ E R FVC +S C Sbjct: 167 LNVLVKINDPSSLLFVPGPNEQTEQVLKELKLLRFFVCFVSNKC 210 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,070,887 Number of Sequences: 219361 Number of extensions: 1292880 Number of successful extensions: 3834 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3832 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
