ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187666.1| Oryza sativa (japonica cultivar-group), predic... 170 2e-39
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 170 2e-39
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
4dbj|AK105352.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
5gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome... 170 2e-39
6ref|XM_450942.1| Oryza sativa (japonica cultivar-group), mRNA 70 6e-09
7ref|XM_450943.1| Oryza sativa (japonica cultivar-group), mRNA 70 6e-09
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
9dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
10dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
11dbj|AK066610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
12dbj|AK061667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
13ref|XM_450429.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
14gb|AC024730.7| Homo sapiens BAC clone RP11-422E4 from 7, complet... 42 1.4
15gb|AC161448.4| Mus musculus BAC clone RP24-149K9 from chromosome... 42 1.4
16gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, co... 42 1.4
17ref|XM_679482.1| PREDICTED: Danio rerio similar to RIKEN cDNA 28... 42 1.4
18ref|XM_702474.1| PREDICTED: Danio rerio similar to RIKEN cDNA 28... 42 1.4
19ref|XM_679314.1| PREDICTED: Danio rerio similar to RIKEN cDNA 28... 42 1.4
20ref|XM_702406.1| PREDICTED: Danio rerio similar to RIKEN cDNA 28... 42 1.4
21emb|AL954383.13| Zebrafish DNA sequence from clone CH211-226M11 ... 42 1.4
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
23dbj|AP005547.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
24gb|AE015927.1| Clostridium tetani E88, complete genome 42 1.4
25emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
26emb|AL935174.11| Zebrafish DNA sequence from clone CH211-195B21 ... 42 1.4
27gb|AC090563.17| Mus musculus chromosome 6, clone RP23-451F7, com... 42 1.4
28ref|XM_481288.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
29emb|CR724860.2|CNS0GM8Y Tetraodon nigroviridis full-length cDNA 40 5.7
30emb|CR724265.2|CNS0GLSF Tetraodon nigroviridis full-length cDNA 40 5.7
31emb|CR723415.2|CNS0GL4T Tetraodon nigroviridis full-length cDNA 40 5.7
32emb|CR665791.2|CNS0FCP1 Tetraodon nigroviridis full-length cDNA 40 5.7
33emb|CR639303.2|CNS0ES99 Tetraodon nigroviridis full-length cDNA 40 5.7
34gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.7
35gb|AY125664.1| Uncultured Methanobacteriaceae archaeon MRR-mcr67... 40 5.7
36gb|AY125619.1| Uncultured Methanobacteriaceae archaeon MRR-mcr26... 40 5.7
37gb|AY125608.1| Uncultured Methanobacteriaceae archaeon MRR-mcr16... 40 5.7
38gb|AY125605.1| Uncultured Methanobacteriaceae archaeon MRR-mcr13... 40 5.7
39gb|AY050749.1| Chloroscombrus orqueta isolate 78 cytochrome b ge... 40 5.7
40gb|AY050718.1| Selaroides leptolepis isolate 70 cytochrome b gen... 40 5.7
41gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 5.7
42dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
43dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
44gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.7
45dbj|AP004696.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
46dbj|AP005541.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
47dbj|AK073591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
48emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chr... 40 5.7
49gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
50emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 40 5.7 
>ref|NM_187666.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1200

 Score =  170 bits (86), Expect = 2e-39
 Identities = 131/146 (89%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccttcttctgctggaccttctccccatacatgtaggaggcgaagccccagagcgagagca 336
            ||||||||| |||  ||||||| || || | |||||||||||| ||||||||||||||||
Sbjct: 1120 ccttcttcttctgcgccttctcgccgtagaggtaggaggcgaatccccagagcgagagca 1061

                                                                        
Query: 337  cgagcgcgatgcccttcggtccgtcaaacttctcgtggaggaagaggacggcgaggatct 396
            ||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||| ||
Sbjct: 1060 cgagcgcgatgcccttcgtcccgtcgaacttctcgtggaggaagatgacggcgaggacct 1001

                                      
Query: 397  gggaaagcggcaggagcacggcgatc 422
            | || |||||||||||||||||||||
Sbjct: 1000 gcgagagcggcaggagcacggcgatc 975
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  170 bits (86), Expect = 2e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                           
Query: 277     ccttcttctgctggaccttctccccatacatgtaggaggcgaagccccagagcgagagca 336
               ||||||||| |||  ||||||| || || | |||||||||||| ||||||||||||||||
Sbjct: 4580873 ccttcttcttctgcgccttctcgccgtagaggtaggaggcgaatccccagagcgagagca 4580932

                                                                           
Query: 337     cgagcgcgatgcccttcggtccgtcaaacttctcgtggaggaagaggacggcgaggatct 396
               ||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||| ||
Sbjct: 4580933 cgagcgcgatgcccttcgtcccgtcgaacttctcgtggaggaagatgacggcgaggacct 4580992

                                         
Query: 397     gggaaagcggcaggagcacggcgatc 422
               | || |||||||||||||||||||||
Sbjct: 4580993 gcgagagcggcaggagcacggcgatc 4581018
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  170 bits (86), Expect = 2e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                           
Query: 277     ccttcttctgctggaccttctccccatacatgtaggaggcgaagccccagagcgagagca 336
               ||||||||| |||  ||||||| || || | |||||||||||| ||||||||||||||||
Sbjct: 4580988 ccttcttcttctgcgccttctcgccgtagaggtaggaggcgaatccccagagcgagagca 4581047

                                                                           
Query: 337     cgagcgcgatgcccttcggtccgtcaaacttctcgtggaggaagaggacggcgaggatct 396
               ||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||| ||
Sbjct: 4581048 cgagcgcgatgcccttcgtcccgtcgaacttctcgtggaggaagatgacggcgaggacct 4581107

                                         
Query: 397     gggaaagcggcaggagcacggcgatc 422
               | || |||||||||||||||||||||
Sbjct: 4581108 gcgagagcggcaggagcacggcgatc 4581133
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>dbj|AK105352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A09, full
            insert sequence
          Length = 1506

 Score =  170 bits (86), Expect = 2e-39
 Identities = 131/146 (89%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccttcttctgctggaccttctccccatacatgtaggaggcgaagccccagagcgagagca 336
            ||||||||| |||  ||||||| || || | |||||||||||| ||||||||||||||||
Sbjct: 1229 ccttcttcttctgcgccttctcgccgtagaggtaggaggcgaatccccagagcgagagca 1170

                                                                        
Query: 337  cgagcgcgatgcccttcggtccgtcaaacttctcgtggaggaagaggacggcgaggatct 396
            ||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||| ||
Sbjct: 1169 cgagcgcgatgcccttcgtcccgtcgaacttctcgtggaggaagatgacggcgaggacct 1110

                                      
Query: 397  gggaaagcggcaggagcacggcgatc 422
            | || |||||||||||||||||||||
Sbjct: 1109 gcgagagcggcaggagcacggcgatc 1084
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>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09,
             complete sequence
          Length = 148894

 Score =  170 bits (86), Expect = 2e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                         
Query: 277   ccttcttctgctggaccttctccccatacatgtaggaggcgaagccccagagcgagagca 336
             ||||||||| |||  ||||||| || || | |||||||||||| ||||||||||||||||
Sbjct: 21828 ccttcttcttctgcgccttctcgccgtagaggtaggaggcgaatccccagagcgagagca 21887

                                                                         
Query: 337   cgagcgcgatgcccttcggtccgtcaaacttctcgtggaggaagaggacggcgaggatct 396
             ||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||| ||
Sbjct: 21888 cgagcgcgatgcccttcgtcccgtcgaacttctcgtggaggaagatgacggcgaggacct 21947

                                       
Query: 397   gggaaagcggcaggagcacggcgatc 422
             | || |||||||||||||||||||||
Sbjct: 21948 gcgagagcggcaggagcacggcgatc 21973
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>ref|XM_450942.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1243

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 308  gtaggaggcgaagccccagagcgagagcacgagcgcgatgcccttcggtccgtcaaactt 367
            ||||||||||| |||||||||||||||||||||||| | |||||||   | |   |||||
Sbjct: 1136 gtaggaggcgaggccccagagcgagagcacgagcgccacgcccttctcgctgctgaactt 1077

                               
Query: 368  ctcgtggaggaagaggacg 386
            |||||||||||||| ||||
Sbjct: 1076 ctcgtggaggaagatgacg 1058
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>ref|XM_450943.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1249

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 308  gtaggaggcgaagccccagagcgagagcacgagcgcgatgcccttcggtccgtcaaactt 367
            ||||||||||| |||||||||||||||||||||||| | |||||||   | |   |||||
Sbjct: 1142 gtaggaggcgaggccccagagcgagagcacgagcgccacgcccttctcgctgctgaactt 1083

                               
Query: 368  ctcgtggaggaagaggacg 386
            |||||||||||||| ||||
Sbjct: 1082 ctcgtggaggaagatgacg 1064
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                            
Query: 308      gtaggaggcgaagccccagagcgagagcacgagcgcgatgcccttcggtccgtcaaactt 367
                ||||||||||| |||||||||||||||||||||||| | |||||||   | |   |||||
Sbjct: 17701473 gtaggaggcgaggccccagagcgagagcacgagcgccacgcccttctcgctgctgaactt 17701532

                                   
Query: 368      ctcgtggaggaagaggacg 386
                |||||||||||||| ||||
Sbjct: 17701533 ctcgtggaggaagatgacg 17701551



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 370     cgtggaggaagaggacggcga 390
               |||||||||||||||||||||
Sbjct: 5497988 cgtggaggaagaggacggcga 5498008
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>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1005_D12
          Length = 150588

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                          
Query: 308    gtaggaggcgaagccccagagcgagagcacgagcgcgatgcccttcggtccgtcaaactt 367
              ||||||||||| |||||||||||||||||||||||| | |||||||   | |   |||||
Sbjct: 150195 gtaggaggcgaggccccagagcgagagcacgagcgccacgcccttctcgctgctgaactt 150254

                                 
Query: 368    ctcgtggaggaagaggacg 386
              |||||||||||||| ||||
Sbjct: 150255 ctcgtggaggaagatgacg 150273
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>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0676H02
          Length = 144252

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 308   gtaggaggcgaagccccagagcgagagcacgagcgcgatgcccttcggtccgtcaaactt 367
             ||||||||||| |||||||||||||||||||||||| | |||||||   | |   |||||
Sbjct: 10107 gtaggaggcgaggccccagagcgagagcacgagcgccacgcccttctcgctgctgaactt 10166

                                
Query: 368   ctcgtggaggaagaggacg 386
             |||||||||||||| ||||
Sbjct: 10167 ctcgtggaggaagatgacg 10185
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>dbj|AK066610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073M15, full
            insert sequence
          Length = 1505

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 308  gtaggaggcgaagccccagagcgagagcacgagcgcgatgcccttcggtccgtcaaactt 367
            ||||||||||| |||||||||||||||||||||||| | |||||||   | |   |||||
Sbjct: 1136 gtaggaggcgaggccccagagcgagagcacgagcgccacgcccttctcgctgctgaactt 1077

                               
Query: 368  ctcgtggaggaagaggacg 386
            |||||||||||||| ||||
Sbjct: 1076 ctcgtggaggaagatgacg 1058
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>dbj|AK061667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F06, full
            insert sequence
          Length = 1458

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 308  gtaggaggcgaagccccagagcgagagcacgagcgcgatgcccttcggtccgtcaaactt 367
            ||||||||||| |||||||||||||||||||||||| | |||||||   | |   |||||
Sbjct: 1142 gtaggaggcgaggccccagagcgagagcacgagcgccacgcccttctcgctgctgaactt 1083

                               
Query: 368  ctcgtggaggaagaggacg 386
            |||||||||||||| ||||
Sbjct: 1082 ctcgtggaggaagatgacg 1064
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>ref|XM_450429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1746

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 370 cgtggaggaagaggacggcga 390
           |||||||||||||||||||||
Sbjct: 402 cgtggaggaagaggacggcga 382
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>gb|AC024730.7| Homo sapiens BAC clone RP11-422E4 from 7, complete sequence
          Length = 151198

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 234 ctcgccacctgctgctgcagcagct 258
           |||||| ||||||||||||||||||
Sbjct: 152 ctcgcctcctgctgctgcagcagct 176
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>gb|AC161448.4| Mus musculus BAC clone RP24-149K9 from chromosome 6, complete sequence
          Length = 190414

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    tttctttgtgctaccctagct 104
             |||||||||||||||||||||
Sbjct: 54269 tttctttgtgctaccctagct 54249



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    tttctttgtgctaccctagc 103
             ||||||||||||||||||||
Sbjct: 24398 tttctttgtgctaccctagc 24379
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>gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, complete sequence
          Length = 212404

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     tttctttgtgctaccctagct 104
              |||||||||||||||||||||
Sbjct: 144694 tttctttgtgctaccctagct 144714



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     tttctttgtgctaccctagct 104
              |||||||||||||||||||||
Sbjct: 112824 tttctttgtgctaccctagct 112844



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    tttctttgtgctaccctagct 104
             |||||||||||||||||||||
Sbjct: 49363 tttctttgtgctaccctagct 49383



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tttctttgtgctaccctagc 103
             ||||||||||||||||||||
Sbjct: 79234 tttctttgtgctaccctagc 79253
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>ref|XM_679482.1| PREDICTED: Danio rerio similar to RIKEN cDNA 2810405J04, transcript
            variant 1 (LOC559900), mRNA
          Length = 1616

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 369  tcgtggaggaagaggacggcgagga 393
            ||||||||||||||||||| |||||
Sbjct: 1436 tcgtggaggaagaggacggggagga 1460
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>ref|XM_702474.1| PREDICTED: Danio rerio similar to RIKEN cDNA 2810405J04, transcript
            variant 2 (LOC559900), mRNA
          Length = 1535

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 369  tcgtggaggaagaggacggcgagga 393
            ||||||||||||||||||| |||||
Sbjct: 1355 tcgtggaggaagaggacggggagga 1379
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>ref|XM_679314.1| PREDICTED: Danio rerio similar to RIKEN cDNA 2810405J04, transcript
            variant 1 (LOC559478), mRNA
          Length = 1616

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 369  tcgtggaggaagaggacggcgagga 393
            ||||||||||||||||||| |||||
Sbjct: 1436 tcgtggaggaagaggacggggagga 1460
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>ref|XM_702406.1| PREDICTED: Danio rerio similar to RIKEN cDNA 2810405J04, transcript
            variant 2 (LOC559478), mRNA
          Length = 1535

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 369  tcgtggaggaagaggacggcgagga 393
            ||||||||||||||||||| |||||
Sbjct: 1355 tcgtggaggaagaggacggggagga 1379
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>emb|AL954383.13| Zebrafish DNA sequence from clone CH211-226M11 in linkage group 17,
             complete sequence
          Length = 206679

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 369   tcgtggaggaagaggacggcgagga 393
             ||||||||||||||||||| |||||
Sbjct: 79274 tcgtggaggaagaggacggggagga 79298
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 370      cgtggaggaagaggacggcga 390
                |||||||||||||||||||||
Sbjct: 17866152 cgtggaggaagaggacggcga 17866132



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 370      cgtggaggaagaggacggcga 390
                |||||||||||||||||||||
Sbjct: 17860524 cgtggaggaagaggacggcga 17860504
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>dbj|AP005547.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1031_C12
          Length = 157574

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    cgtggaggaagaggacggcga 390
              |||||||||||||||||||||
Sbjct: 103827 cgtggaggaagaggacggcga 103847
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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 271    cctccgccttcttctgctgga 291
              |||||||||||||||||||||
Sbjct: 109591 cctccgccttcttctgctgga 109571
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>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04,
             complete sequence
          Length = 164645

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 370   cgtggaggaagaggacggcga 390
             |||||||||||||||||||||
Sbjct: 62907 cgtggaggaagaggacggcga 62887



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 370   cgtggaggaagaggacggcga 390
             |||||||||||||||||||||
Sbjct: 57279 cgtggaggaagaggacggcga 57259
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>emb|AL935174.11| Zebrafish DNA sequence from clone CH211-195B21 in linkage group 17,
              complete sequence
          Length = 195606

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 369    tcgtggaggaagaggacggcgagga 393
              ||||||||||||||||||| |||||
Sbjct: 114799 tcgtggaggaagaggacggggagga 114775
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>gb|AC090563.17| Mus musculus chromosome 6, clone RP23-451F7, complete sequence
          Length = 199986

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    tttctttgtgctaccctagct 104
             |||||||||||||||||||||
Sbjct: 44957 tttctttgtgctaccctagct 44937
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>ref|XM_481288.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1155

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 ggaggaagaggacggcgagg 392
           ||||||||||||||||||||
Sbjct: 52  ggaggaagaggacggcgagg 33
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>emb|CR724860.2|CNS0GM8Y Tetraodon nigroviridis full-length cDNA
          Length = 1773

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 910 cacctgctgctgcagcagct 929
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>emb|CR724265.2|CNS0GLSF Tetraodon nigroviridis full-length cDNA
          Length = 1751

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 889 cacctgctgctgcagcagct 908
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>emb|CR723415.2|CNS0GL4T Tetraodon nigroviridis full-length cDNA
          Length = 1750

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 889 cacctgctgctgcagcagct 908
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>emb|CR665791.2|CNS0FCP1 Tetraodon nigroviridis full-length cDNA
          Length = 1343

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 440 cacctgctgctgcagcagct 459
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>emb|CR639303.2|CNS0ES99 Tetraodon nigroviridis full-length cDNA
          Length = 1748

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 889 cacctgctgctgcagcagct 908
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    aggaagaggacggcgaggat 394
              ||||||||||||||||||||
Sbjct: 623435 aggaagaggacggcgaggat 623416
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>gb|AY125664.1| Uncultured Methanobacteriaceae archaeon MRR-mcr67 methyl-coenzyme M
           reductase II alpha subunit (mrtA) gene, partial cds
          Length = 483

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 269 cacctgctgctgcagcagct 250
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>gb|AY125619.1| Uncultured Methanobacteriaceae archaeon MRR-mcr26 methyl-coenzyme M
           reductase II alpha subunit (mrtA) gene, partial cds
          Length = 483

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 269 cacctgctgctgcagcagct 250
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>gb|AY125608.1| Uncultured Methanobacteriaceae archaeon MRR-mcr16 methyl-coenzyme M
           reductase II alpha subunit (mrtA) gene, partial cds
          Length = 483

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 269 cacctgctgctgcagcagct 250
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>gb|AY125605.1| Uncultured Methanobacteriaceae archaeon MRR-mcr13 methyl-coenzyme M
           reductase II alpha subunit (mrtA) gene, partial cds
          Length = 500

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 cacctgctgctgcagcagct 258
           ||||||||||||||||||||
Sbjct: 286 cacctgctgctgcagcagct 267
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>gb|AY050749.1| Chloroscombrus orqueta isolate 78 cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1140

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 tctcgtggaggaagaggacg 386
           ||||||||||||||||||||
Sbjct: 607 tctcgtggaggaagaggacg 588
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>gb|AY050718.1| Selaroides leptolepis isolate 70 cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1140

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 tctcgtggaggaagaggacg 386
           ||||||||||||||||||||
Sbjct: 607 tctcgtggaggaagaggacg 588
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    tcgccacctgctgctgcagc 254
              ||||||||||||||||||||
Sbjct: 372452 tcgccacctgctgctgcagc 372433
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 371      gtggaggaagaggacggcga 390
                ||||||||||||||||||||
Sbjct: 13251008 gtggaggaagaggacggcga 13251027
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 373      ggaggaagaggacggcgagg 392
                ||||||||||||||||||||
Sbjct: 11303489 ggaggaagaggacggcgagg 11303470
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    cacgagcgcgatgcccttcg 354
              ||||||||||||||||||||
Sbjct: 331320 cacgagcgcgatgcccttcg 331339
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>dbj|AP004696.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0475A09
          Length = 143417

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   ggaggaagaggacggcgagg 392
             ||||||||||||||||||||
Sbjct: 41094 ggaggaagaggacggcgagg 41075
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>dbj|AP005541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0436B05
          Length = 149754

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    ggaggaagaggacggcgagg 392
              ||||||||||||||||||||
Sbjct: 138507 ggaggaagaggacggcgagg 138488
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>dbj|AK073591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M04, full
           insert sequence
          Length = 1520

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 agcgagagcacgagcgcgat 346
           ||||||||||||||||||||
Sbjct: 64  agcgagagcacgagcgcgat 45
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>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete
             sequence
          Length = 212007

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   gggggcagccagctccaggt 222
             ||||||||||||||||||||
Sbjct: 62984 gggggcagccagctccaggt 62965
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 371      gtggaggaagaggacggcga 390
                ||||||||||||||||||||
Sbjct: 13205282 gtggaggaagaggacggcga 13205301
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>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 193499

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   gtggaggaagaggacggcga 390
             ||||||||||||||||||||
Sbjct: 79735 gtggaggaagaggacggcga 79716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,538,170
Number of Sequences: 3902068
Number of extensions: 3538170
Number of successful extensions: 75175
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74683
Number of HSP's gapped (non-prelim): 492
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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