Clone Name | rbart09b01 |
---|---|
Clone Library Name | barley_pub |
>gb|AF155129.1|AF155129 Hordeum vulgare dehydrin 12 (Dhn12) gene, complete cds Length = 2890 Score = 52.0 bits (26), Expect = 4e-05 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1 aaaaccaaaccgaattttttctccccgtcc 30 ||||||||||||| |||||||||||||||| Sbjct: 2325 aaaaccaaaccgatttttttctccccgtcc 2354
>ref|XM_964133.1| PREDICTED: Tribolium castaneum similar to CG10120-PB, isoform B (LOC657686), mRNA Length = 2005 Score = 36.2 bits (18), Expect = 2.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaaccaaaccgaattttt 19 |||||||||||||||||| Sbjct: 505 aaaccaaaccgaattttt 488
>gb|AC183493.1| Brassica oleracea Contig B, complete sequence Length = 284024 Score = 36.2 bits (18), Expect = 2.2 Identities = 21/22 (95%) Strand = Plus / Minus Query: 1 aaaaccaaaccgaattttttct 22 |||||||||||| ||||||||| Sbjct: 186472 aaaaccaaaccggattttttct 186451
>gb|AC067939.1|AC067939 Neurospora crassa chromosome 7, clone G7-G3, complete sequence Length = 38230 Score = 36.2 bits (18), Expect = 2.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaaccaaaccgaattttt 19 |||||||||||||||||| Sbjct: 29960 aaaccaaaccgaattttt 29943
>gb|AC067938.1|AC067938 Neurospora crassa chromosome 7, clone G21-F8, complete sequence Length = 37068 Score = 36.2 bits (18), Expect = 2.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaaccaaaccgaattttt 19 |||||||||||||||||| Sbjct: 11090 aaaccaaaccgaattttt 11073
>gb|U41021.1| Caenorhabditis elegans cosmid F14D12, complete sequence Length = 40901 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 4 accaaaccgaatttttt 20 ||||||||||||||||| Sbjct: 4794 accaaaccgaatttttt 4810
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 5 ccaaaccgaattttttc 21 ||||||||||||||||| Sbjct: 715002 ccaaaccgaattttttc 714986
>emb|AL935255.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 4/11 Length = 269050 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 3 aaccaaaccgaattttt 19 ||||||||||||||||| Sbjct: 83996 aaccaaaccgaattttt 83980
>gb|AC010665.6| Drosophila melanogaster 3L BAC RP98-23H9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 156526 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 1 aaaaccaaaccgaattt 17 ||||||||||||||||| Sbjct: 117387 aaaaccaaaccgaattt 117403
>dbj|AB232922.1| Oryzias latipes hox gene cluster, complete cds, contains hoxCa Length = 238642 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 3 aaccaaaccgaattttt 19 ||||||||||||||||| Sbjct: 5213 aaccaaaccgaattttt 5197
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete sequence Length = 103194 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 2 aaaccaaaccgaatttt 18 ||||||||||||||||| Sbjct: 67672 aaaccaaaccgaatttt 67688
>gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, complete sequence Length = 166093 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 2 aaaccaaaccgaatttt 18 ||||||||||||||||| Sbjct: 105052 aaaccaaaccgaatttt 105068
>gb|AC098575.6| Drosophila melanogaster X BAC RP98-3D13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 155685 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 1 aaaaccaaaccgaattt 17 ||||||||||||||||| Sbjct: 20238 aaaaccaaaccgaattt 20254
>gb|S57424.1| tgrE chaperonin operon: TGroES, TGroEL=heat shock protein [thermophilic bacterium PS3, Genomic, 824 nt] Length = 824 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 8 aaccgaattttttctcc 24 ||||||||||||||||| Sbjct: 722 aaccgaattttttctcc 706
>gb|AC091902.2| Homo sapiens chromosome 5 clone RP11-16L24, complete sequence Length = 188877 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 8 aaccgaattttttctcc 24 ||||||||||||||||| Sbjct: 83565 aaccgaattttttctcc 83581
>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete sequence Length = 104679 Score = 34.2 bits (17), Expect = 8.7 Identities = 23/25 (92%) Strand = Plus / Minus Query: 2 aaaccaaaccgaattttttctcccc 26 |||||||||||| ||| |||||||| Sbjct: 82081 aaaccaaaccgattttcttctcccc 82057
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 14 attttttctccccgtcc 30 ||||||||||||||||| Sbjct: 1523205 attttttctccccgtcc 1523221
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 8 aaccgaattttttctcc 24 ||||||||||||||||| Sbjct: 264654 aaccgaattttttctcc 264638
>gb|AC124615.11| Mus musculus chromosome 5, clone RP24-445F15, complete sequence Length = 128560 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 2 aaaccaaaccgaatttt 18 ||||||||||||||||| Sbjct: 62392 aaaccaaaccgaatttt 62376
>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete sequence Length = 302417 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 1 aaaaccaaaccgaattt 17 ||||||||||||||||| Sbjct: 64241 aaaaccaaaccgaattt 64257
>gb|AE003426.3| Drosophila melanogaster chromosome X, section 10 of 74 of the complete sequence Length = 396604 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 1 aaaaccaaaccgaattt 17 ||||||||||||||||| Sbjct: 101022 aaaaccaaaccgaattt 101006
>dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1445E9, complete sequence Length = 151880 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 2 aaaccaaaccgaatttt 18 ||||||||||||||||| Sbjct: 66236 aaaccaaaccgaatttt 66252
>gb|AC005920.1|AC005920 Homo sapiens chromosome 17, clone hRPK.700_H_6, complete sequence Length = 175793 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 10 ccgaattttttctcccc 26 ||||||||||||||||| Sbjct: 141955 ccgaattttttctcccc 141939
>gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Systems Human BAC library) contains Bmx gene, complete sequence Length = 159446 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 11 cgaattttttctccccg 27 ||||||||||||||||| Sbjct: 122071 cgaattttttctccccg 122087
>gb|U26736.1|CEU26736 Caenorhabditis elegans stomatin-like protein MEC-2 (mec-2) gene, complete cds Length = 18124 Score = 34.2 bits (17), Expect = 8.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 4 accaaaccgaatttttt 20 ||||||||||||||||| Sbjct: 7292 accaaaccgaatttttt 7308 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 289,326 Number of Sequences: 3902068 Number of extensions: 289326 Number of successful extensions: 57686 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57571 Number of HSP's gapped (non-prelim): 115 length of query: 30 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 10 effective length of database: 17,155,003,908 effective search space: 171550039080 effective search space used: 171550039080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 17 (34.2 bits)