ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF155129.1|AF155129 Hordeum vulgare dehydrin 12 (Dhn12) gene,... 52 4e-05
2ref|XM_964133.1| PREDICTED: Tribolium castaneum similar to CG101... 36 2.2
3gb|AC183493.1| Brassica oleracea Contig B, complete sequence 36 2.2
4gb|AC067939.1|AC067939 Neurospora crassa chromosome 7, clone G7-... 36 2.2
5gb|AC067938.1|AC067938 Neurospora crassa chromosome 7, clone G21... 36 2.2
6gb|U41021.1| Caenorhabditis elegans cosmid F14D12, complete sequ... 34 8.7
7emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 34 8.7
8emb|AL935255.1| Lactobacillus plantarum strain WCFS1 complete ge... 34 8.7
9gb|AC010665.6| Drosophila melanogaster 3L BAC RP98-23H9 (Roswell... 34 8.7
10dbj|AB232922.1| Oryzias latipes hox gene cluster, complete cds, ... 34 8.7
11gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 ma... 34 8.7
12gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, co... 34 8.7
13gb|AC098575.6| Drosophila melanogaster X BAC RP98-3D13 (Roswell ... 34 8.7
14gb|S57424.1| tgrE chaperonin operon: TGroES, TGroEL=heat shock p... 34 8.7
15gb|AC091902.2| Homo sapiens chromosome 5 clone RP11-16L24, compl... 34 8.7
16gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14... 34 8.7
17gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 34 8.7
18dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 34 8.7
19gb|AC124615.11| Mus musculus chromosome 5, clone RP24-445F15, co... 34 8.7
20gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16... 34 8.7
21gb|AE003426.3| Drosophila melanogaster chromosome X, section 10 ... 34 8.7
22dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 34 8.7
23gb|AC005920.1|AC005920 Homo sapiens chromosome 17, clone hRPK.70... 34 8.7
24gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Sy... 34 8.7
25gb|U26736.1|CEU26736 Caenorhabditis elegans stomatin-like protei... 34 8.7

>gb|AF155129.1|AF155129 Hordeum vulgare dehydrin 12 (Dhn12) gene, complete cds
          Length = 2890

 Score = 52.0 bits (26), Expect = 4e-05
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 1    aaaaccaaaccgaattttttctccccgtcc 30
            ||||||||||||| ||||||||||||||||
Sbjct: 2325 aaaaccaaaccgatttttttctccccgtcc 2354



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>ref|XM_964133.1| PREDICTED: Tribolium castaneum similar to CG10120-PB, isoform B
           (LOC657686), mRNA
          Length = 2005

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 2   aaaccaaaccgaattttt 19
           ||||||||||||||||||
Sbjct: 505 aaaccaaaccgaattttt 488



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>gb|AC183493.1| Brassica oleracea Contig B, complete sequence
          Length = 284024

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 1      aaaaccaaaccgaattttttct 22
              |||||||||||| |||||||||
Sbjct: 186472 aaaaccaaaccggattttttct 186451



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>gb|AC067939.1|AC067939 Neurospora crassa chromosome 7, clone G7-G3, complete sequence
          Length = 38230

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     aaaccaaaccgaattttt 19
             ||||||||||||||||||
Sbjct: 29960 aaaccaaaccgaattttt 29943



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>gb|AC067938.1|AC067938 Neurospora crassa chromosome 7, clone G21-F8, complete sequence
          Length = 37068

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     aaaccaaaccgaattttt 19
             ||||||||||||||||||
Sbjct: 11090 aaaccaaaccgaattttt 11073



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>gb|U41021.1| Caenorhabditis elegans cosmid F14D12, complete sequence
          Length = 40901

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 4    accaaaccgaatttttt 20
            |||||||||||||||||
Sbjct: 4794 accaaaccgaatttttt 4810



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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 5      ccaaaccgaattttttc 21
              |||||||||||||||||
Sbjct: 715002 ccaaaccgaattttttc 714986



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>emb|AL935255.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 4/11
          Length = 269050

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 3     aaccaaaccgaattttt 19
             |||||||||||||||||
Sbjct: 83996 aaccaaaccgaattttt 83980



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>gb|AC010665.6| Drosophila melanogaster 3L BAC RP98-23H9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 156526

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 1      aaaaccaaaccgaattt 17
              |||||||||||||||||
Sbjct: 117387 aaaaccaaaccgaattt 117403



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>dbj|AB232922.1| Oryzias latipes hox gene cluster, complete cds, contains hoxCa
          Length = 238642

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 3    aaccaaaccgaattttt 19
            |||||||||||||||||
Sbjct: 5213 aaccaaaccgaattttt 5197



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>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
             sequence
          Length = 103194

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 2     aaaccaaaccgaatttt 18
             |||||||||||||||||
Sbjct: 67672 aaaccaaaccgaatttt 67688



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>gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, complete sequence
          Length = 166093

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 2      aaaccaaaccgaatttt 18
              |||||||||||||||||
Sbjct: 105052 aaaccaaaccgaatttt 105068



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>gb|AC098575.6| Drosophila melanogaster X BAC RP98-3D13 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 155685

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 1     aaaaccaaaccgaattt 17
             |||||||||||||||||
Sbjct: 20238 aaaaccaaaccgaattt 20254



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>gb|S57424.1| tgrE chaperonin operon: TGroES, TGroEL=heat shock protein
           [thermophilic bacterium PS3, Genomic, 824 nt]
          Length = 824

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 8   aaccgaattttttctcc 24
           |||||||||||||||||
Sbjct: 722 aaccgaattttttctcc 706



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>gb|AC091902.2| Homo sapiens chromosome 5 clone RP11-16L24, complete sequence
          Length = 188877

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 8     aaccgaattttttctcc 24
             |||||||||||||||||
Sbjct: 83565 aaccgaattttttctcc 83581



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>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
             sequence
          Length = 104679

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                      
Query: 2     aaaccaaaccgaattttttctcccc 26
             |||||||||||| ||| ||||||||
Sbjct: 82081 aaaccaaaccgattttcttctcccc 82057



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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 14      attttttctccccgtcc 30
               |||||||||||||||||
Sbjct: 1523205 attttttctccccgtcc 1523221



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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 8      aaccgaattttttctcc 24
              |||||||||||||||||
Sbjct: 264654 aaccgaattttttctcc 264638



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>gb|AC124615.11| Mus musculus chromosome 5, clone RP24-445F15, complete sequence
          Length = 128560

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 2     aaaccaaaccgaatttt 18
             |||||||||||||||||
Sbjct: 62392 aaaccaaaccgaatttt 62376



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>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete
             sequence
          Length = 302417

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 1     aaaaccaaaccgaattt 17
             |||||||||||||||||
Sbjct: 64241 aaaaccaaaccgaattt 64257



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>gb|AE003426.3| Drosophila melanogaster chromosome X, section 10 of 74 of the complete
              sequence
          Length = 396604

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 1      aaaaccaaaccgaattt 17
              |||||||||||||||||
Sbjct: 101022 aaaaccaaaccgaattt 101006



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>dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1445E9, complete
             sequence
          Length = 151880

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 2     aaaccaaaccgaatttt 18
             |||||||||||||||||
Sbjct: 66236 aaaccaaaccgaatttt 66252



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>gb|AC005920.1|AC005920 Homo sapiens chromosome 17, clone hRPK.700_H_6, complete sequence
          Length = 175793

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 10     ccgaattttttctcccc 26
              |||||||||||||||||
Sbjct: 141955 ccgaattttttctcccc 141939



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>gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Systems Human BAC library)
              contains Bmx gene, complete sequence
          Length = 159446

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 11     cgaattttttctccccg 27
              |||||||||||||||||
Sbjct: 122071 cgaattttttctccccg 122087



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>gb|U26736.1|CEU26736 Caenorhabditis elegans stomatin-like protein MEC-2 (mec-2) gene,
            complete cds
          Length = 18124

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 4    accaaaccgaatttttt 20
            |||||||||||||||||
Sbjct: 7292 accaaaccgaatttttt 7308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 289,326
Number of Sequences: 3902068
Number of extensions: 289326
Number of successful extensions: 57686
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57571
Number of HSP's gapped (non-prelim): 115
length of query: 30
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 10
effective length of database: 17,155,003,908
effective search space: 171550039080
effective search space used: 171550039080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)
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