ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WRK65_ARATH (Q9LP56) Probable WRKY transcription factor 65 (WRKY... 37 0.020
2CALX_PONPY (Q5R440) Calnexin precursor 31 1.9
3CALX_HUMAN (P27824) Calnexin precursor (Major histocompatibility... 31 1.9
4CALX_CANFA (P24643) Calnexin precursor (pp90) 31 1.9
5CALX_RAT (P35565) Calnexin precursor 30 2.5
6CALX_MOUSE (P35564) Calnexin precursor 30 2.5
7WRK69_ARATH (Q93WV5) Probable WRKY transcription factor 69 (WRKY... 30 4.2
8EI2B2_PYRAB (Q9V281) Putative translation initiation factor eIF-... 29 7.2
9EI2B2_PYRHO (O57947) Putative translation initiation factor eIF-... 28 9.4

>WRK65_ARATH (Q9LP56) Probable WRKY transcription factor 65 (WRKY DNA-binding|
           protein 65)
          Length = 259

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
 Frame = -1

Query: 348 DFGWFEQYPTWPRTALYVPAFD------VAPPEDWEREL---QGEDALFAGLGELPECAI 196
           +F WF +  T   T L  P F       V+  +D        + +++LFA LGELPEC++
Sbjct: 184 EFAWFTEMETTSSTILESPIFSSEKKTAVSGADDVAVFFPMGEEDESLFADLGELPECSV 243

Query: 195 VFGRR 181
           VF  R
Sbjct: 244 VFRHR 248



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>CALX_PONPY (Q5R440) Calnexin precursor|
          Length = 592

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 342 GWFEQYPTWPRTALYVPAFDVAPPEDWERELQGE 241
           GW +  P       YVP  D   PEDW+ ++ GE
Sbjct: 322 GWLDDEPE------YVPDPDAEKPEDWDEDMDGE 349



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>CALX_HUMAN (P27824) Calnexin precursor (Major histocompatibility complex class|
           I antigen-binding protein p88) (p90) (IP90)
          Length = 592

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 342 GWFEQYPTWPRTALYVPAFDVAPPEDWERELQGE 241
           GW +  P       YVP  D   PEDW+ ++ GE
Sbjct: 322 GWLDDEPE------YVPDPDAEKPEDWDEDMDGE 349



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>CALX_CANFA (P24643) Calnexin precursor (pp90)|
          Length = 593

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 342 GWFEQYPTWPRTALYVPAFDVAPPEDWERELQGE 241
           GW +  P       YVP  D   PEDW+ ++ GE
Sbjct: 323 GWLDDEPE------YVPDPDAEKPEDWDEDMDGE 350



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>CALX_RAT (P35565) Calnexin precursor|
          Length = 591

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 342 GWFEQYPTWPRTALYVPAFDVAPPEDWERELQGE 241
           GW +  P       Y+P  D   PEDW+ ++ GE
Sbjct: 323 GWLDDEPE------YIPDPDAEKPEDWDEDMDGE 350



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>CALX_MOUSE (P35564) Calnexin precursor|
          Length = 591

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 342 GWFEQYPTWPRTALYVPAFDVAPPEDWERELQGE 241
           GW +  P       Y+P  D   PEDW+ ++ GE
Sbjct: 323 GWLDDEPE------YIPDPDAEKPEDWDEDMDGE 350



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>WRK69_ARATH (Q93WV5) Probable WRKY transcription factor 69 (WRKY DNA-binding|
           protein 69)
          Length = 271

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 348 DFGWFEQYPTWPRTALYVPAF-DVAPPEDWERELQGEDALFAGLGELPECAIVFGR 184
           +FGWF  Y     ++     F DV     +    + +++LF  LG+LP+CA VF R
Sbjct: 194 EFGWF--YDASISSSSGSSNFLDVTLERGFSVGQEEDESLFGDLGDLPDCASVFRR 247



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>EI2B2_PYRAB (Q9V281) Putative translation initiation factor eIF-2B subunit 2|
           (eIF-2B GDP-GTP exchange factor)
          Length = 324

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 333 EQYPTWPRTA-LYVPAFDVAPPE 268
           E+  TWP+   ++ PAFDV PPE
Sbjct: 265 EELKTWPKNIEVWNPAFDVTPPE 287



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>EI2B2_PYRHO (O57947) Putative translation initiation factor eIF-2B subunit 2|
           (eIF-2B GDP-GTP exchange factor)
          Length = 324

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 333 EQYPTWPRTA-LYVPAFDVAPPE 268
           E+  TWP+   ++ PAFDV PPE
Sbjct: 265 EELRTWPKNIEVWNPAFDVTPPE 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,344,489
Number of Sequences: 219361
Number of extensions: 328086
Number of successful extensions: 1058
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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