ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478229.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AK108797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5tpe|BN000631.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 82 2e-12
6gb|AC164425.3| Mus musculus BAC clone RP24-497H13 from chromosom... 44 0.39
7ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.6
10dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
11dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
12dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
13tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 1.6
14ref|XM_776996.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.1
15gb|AC009505.3| Homo sapiens BAC clone RP11-526D2 from 2, complet... 40 6.1
16gb|AC018878.8| Homo sapiens BAC clone RP11-297N12 from 2, comple... 40 6.1
17gb|AY111607.1| Zea mays CL1682_1 mRNA sequence 40 6.1
18gb|AY108658.1| Zea mays PCO073925 mRNA sequence 40 6.1
19gb|AF037033.1|AF037033 Zea mays anionic peroxidase H mRNA, compl... 40 6.1 
>ref|XM_478229.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1266

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 276 agcatcttctggtccgtctccaggagtcccatcctgcgctccaggttcttgtagtagccg 335
           |||| ||||||||||||||||||||| |||||   ||||  |||||||||||||||||||
Sbjct: 929 agcagcttctggtccgtctccaggaggcccatgtcgcgcagcaggttcttgtagtagccg 870

                                
Query: 336 ttatcgaacgccgtgggcgtg 356
           || |||||| |||| ||||||
Sbjct: 869 ttgtcgaactccgtcggcgtg 849



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                        
Query: 131  ggagcacttggatcggacctcgccctcgctgccagtgagcacctgcacgttgccgagcca 190
            ||||||||||   ||||||||||| |||  ||| |||||||||||| ||  |||||| | 
Sbjct: 1077 ggagcacttgaggcggacctcgccttcgtcgccggtgagcacctgcgcggcgccgaggcg 1018

                                  
Query: 191  gcgcatggactcgacggactgg 212
            ||||||||| ||| || |||||
Sbjct: 1017 gcgcatggagtcggcgaactgg 996
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                            
Query: 276      agcatcttctggtccgtctccaggagtcccatcctgcgctccaggttcttgtagtagccg 335
                |||| ||||||||||||||||||||| |||||   ||||  |||||||||||||||||||
Sbjct: 18713224 agcagcttctggtccgtctccaggaggcccatgtcgcgcagcaggttcttgtagtagccg 18713165

                                     
Query: 336      ttatcgaacgccgtgggcgtg 356
                || |||||| |||| ||||||
Sbjct: 18713164 ttgtcgaactccgtcggcgtg 18713144



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                            
Query: 131      ggagcacttggatcggacctcgccctcgctgccagtgagcacctgcacgttgccgagcca 190
                ||||||||||   ||||||||||| |||  ||| |||||||||||| ||  |||||| | 
Sbjct: 18713372 ggagcacttgaggcggacctcgccttcgtcgccggtgagcacctgcgcggcgccgaggcg 18713313

                                      
Query: 191      gcgcatggactcgacggactgg 212
                ||||||||| ||| || |||||
Sbjct: 18713312 gcgcatggagtcggcgaactgg 18713291
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>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0055I24
          Length = 155872

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                         
Query: 276   agcatcttctggtccgtctccaggagtcccatcctgcgctccaggttcttgtagtagccg 335
             |||| ||||||||||||||||||||| |||||   ||||  |||||||||||||||||||
Sbjct: 45512 agcagcttctggtccgtctccaggaggcccatgtcgcgcagcaggttcttgtagtagccg 45453

                                  
Query: 336   ttatcgaacgccgtgggcgtg 356
             || |||||| |||| ||||||
Sbjct: 45452 ttgtcgaactccgtcggcgtg 45432



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                         
Query: 131   ggagcacttggatcggacctcgccctcgctgccagtgagcacctgcacgttgccgagcca 190
             ||||||||||   ||||||||||| |||  ||| |||||||||||| ||  |||||| | 
Sbjct: 45660 ggagcacttgaggcggacctcgccttcgtcgccggtgagcacctgcgcggcgccgaggcg 45601

                                   
Query: 191   gcgcatggactcgacggactgg 212
             ||||||||| ||| || |||||
Sbjct: 45600 gcgcatggagtcggcgaactgg 45579
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>dbj|AK108797.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C03, full
           insert sequence
          Length = 1266

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 276 agcatcttctggtccgtctccaggagtcccatcctgcgctccaggttcttgtagtagccg 335
           |||| ||||||||||||||||||||| |||||   ||||  |||||||||||||||||||
Sbjct: 929 agcagcttctggtccgtctccaggaggcccatgtcgcgcagcaggttcttgtagtagccg 870

                                
Query: 336 ttatcgaacgccgtgggcgtg 356
           || |||||| |||| ||||||
Sbjct: 869 ttgtcgaactccgtcggcgtg 849



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                        
Query: 131  ggagcacttggatcggacctcgccctcgctgccagtgagcacctgcacgttgccgagcca 190
            ||||||||||   ||||||||||| |||  ||| |||||||||||| ||  |||||| | 
Sbjct: 1077 ggagcacttgaggcggacctcgccttcgtcgccggtgagcacctgcgcggcgccgaggcg 1018

                                  
Query: 191  gcgcatggactcgacggactgg 212
            ||||||||| ||| || |||||
Sbjct: 1017 gcgcatggagtcggcgaactgg 996
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>tpe|BN000631.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx102 gene for
            class III peroxidase 102 precursor, exons 1-3
          Length = 1252

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                        
Query: 276  agcatcttctggtccgtctccaggagtcccatcctgcgctccaggttcttgtagtagccg 335
            |||| ||||||||||||||||||||| |||||   ||||  |||||||||||||||||||
Sbjct: 1080 agcagcttctggtccgtctccaggaggcccatgtcgcgcagcaggttcttgtagtagccg 1021

                                 
Query: 336  ttatcgaacgccgtgggcgtg 356
            || |||||| |||| ||||||
Sbjct: 1020 ttgtcgaactccgtcggcgtg 1000



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                        
Query: 131  ggagcacttggatcggacctcgccctcgctgccagtgagcacctgcacgttgccgagcca 190
            ||||||||||   ||||||||||| |||  ||| |||||||||||| ||  |||||| | 
Sbjct: 1228 ggagcacttgaggcggacctcgccttcgtcgccggtgagcacctgcgcggcgccgaggcg 1169

                                  
Query: 191  gcgcatggactcgacggactgg 212
            ||||||||| ||| || |||||
Sbjct: 1168 gcgcatggagtcggcgaactgg 1147
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>gb|AC164425.3| Mus musculus BAC clone RP24-497H13 from chromosome 16, complete
             sequence
          Length = 162603

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 84    gcagacttatatagtgtggaag 105
             ||||||||||||||||||||||
Sbjct: 42272 gcagacttatatagtgtggaag 42293
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>ref|NM_183815.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 146 gacctcgccctcgctgccagtgagcacct 174
           ||||||||||| |||||| ||||||||||
Sbjct: 954 gacctcgccctggctgccggtgagcacct 926
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 146      gacctcgccctcgctgccagtgagcacct 174
                ||||||||||| |||||| ||||||||||
Sbjct: 12539775 gacctcgccctggctgccggtgagcacct 12539747
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 378     tcgtgctccgcgtcgccgcggcggc 402
               |||||||| ||||||||||||||||
Sbjct: 3856044 tcgtgctcggcgtcgccgcggcggc 3856020
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0537A05
          Length = 152396

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 146   gacctcgccctcgctgccagtgagcacct 174
             ||||||||||| |||||| ||||||||||
Sbjct: 51385 gacctcgccctggctgccggtgagcacct 51357
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>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1135C02
          Length = 152306

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 146    gacctcgccctcgctgccagtgagcacct 174
              ||||||||||| |||||| ||||||||||
Sbjct: 125390 gacctcgccctggctgccggtgagcacct 125362
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>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full
            insert sequence
          Length = 5938

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 146  gacctcgccctcgctgccagtgagcacct 174
            ||||||||||| |||||| ||||||||||
Sbjct: 5566 gacctcgccctggctgccggtgagcacct 5538
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>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for
            class III peroxidase 14 precursor, exons 1-3
          Length = 5620

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 146  gacctcgccctcgctgccagtgagcacct 174
            ||||||||||| |||||| ||||||||||
Sbjct: 5503 gacctcgccctggctgccggtgagcacct 5475
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>ref|XM_776996.1| PREDICTED: Strongylocentrotus purpuratus similar to glutamate
           receptor, ionotropic, AMPA4 (alpha 4) (LOC576721),
           partial mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 gctccaggttcttgtagtag 332
           ||||||||||||||||||||
Sbjct: 85  gctccaggttcttgtagtag 66
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>gb|AC009505.3| Homo sapiens BAC clone RP11-526D2 from 2, complete sequence
          Length = 163880

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    tctccaggagtcccatcctg 311
              ||||||||||||||||||||
Sbjct: 163475 tctccaggagtcccatcctg 163456
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>gb|AC018878.8| Homo sapiens BAC clone RP11-297N12 from 2, complete sequence
          Length = 170801

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  tctccaggagtcccatcctg 311
            ||||||||||||||||||||
Sbjct: 1595 tctccaggagtcccatcctg 1576
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>gb|AY111607.1| Zea mays CL1682_1 mRNA sequence
          Length = 982

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 317 caggttcttgtagtagccgttatcgaac 344
           |||||||||||||||| |||| ||||||
Sbjct: 553 caggttcttgtagtagtcgttgtcgaac 526
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>gb|AY108658.1| Zea mays PCO073925 mRNA sequence
          Length = 1570

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 317  caggttcttgtagtagccgttatcgaac 344
            |||||||||||||||| |||| ||||||
Sbjct: 1031 caggttcttgtagtagtcgttgtcgaac 1004
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>gb|AF037033.1|AF037033 Zea mays anionic peroxidase H mRNA, complete cds
          Length = 1012

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 317 caggttcttgtagtagccgttatcgaac 344
           |||||||||||||||| |||| ||||||
Sbjct: 583 caggttcttgtagtagtcgttgtcgaac 556


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,275,516
Number of Sequences: 3902068
Number of extensions: 3275516
Number of successful extensions: 57176
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57026
Number of HSP's gapped (non-prelim): 150
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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