ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 53 3e-07
2GRP2_NICSY (P27484) Glycine-rich protein 2 44 2e-04
3GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b) 44 3e-04
4CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP)... 39 0.006
5CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (... 39 0.006
6CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)... 39 0.006
7CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)... 39 0.006
8CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)... 39 0.006
9GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 39 0.008
10GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 39 0.008
11GIS2_YEAST (P53849) Zinc-finger protein GIS2 37 0.018
12GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ... 36 0.040
13BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog 35 0.090
14LARK_DROME (Q94901) RNA-binding protein lark 34 0.15
15ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5 34 0.20
16GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-... 33 0.34
17AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-int... 33 0.34
18GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 0.58
19ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9 32 0.58
20POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 32 0.58
21POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 0.58
22ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9 32 0.58
23GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; C... 32 0.76
24GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote... 32 0.76
25GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote... 32 0.76
26POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 0.76
27GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 0.76
28ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13 32 0.76
29ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11 32 0.99
30AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-int... 32 0.99
31RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro... 32 0.99
32GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (M... 32 0.99
33RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro... 31 1.3
34RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro... 31 1.3
35RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p... 31 1.3
36RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro... 31 1.3
37RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro... 31 1.3
38ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7 31 1.3
39RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro... 31 1.3
40RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p... 31 1.3
41COAT_SOCMV (P15627) Coat protein 31 1.3
42GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15... 31 1.3
43GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15... 31 1.3
44GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15... 31 1.3
45GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 1.3
46GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ... 31 1.3
47POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 1.3
48POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 1.7
49ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3 31 1.7
50GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein... 31 1.7
51GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein... 31 1.7
52GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein... 31 1.7
53GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 1.7
54GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 1.7
55POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 1.7
56GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 1.7
57POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 1.7
58POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 1.7
59GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 1.7
60GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 1.7
61GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; ... 31 1.7
62POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 2.2
63YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I 30 2.2
64POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 2.2
65GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ... 30 2.2
66POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 2.2
67GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ... 30 2.2
68GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 2.2
69GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 2.2
70GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 2.2
71COAT_FMVD (P09519) Probable coat protein 30 2.2
72POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 2.2
73POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 2.2
74GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 2.2
75GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ... 30 2.2
76GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 2.2
77GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; ... 30 2.9
78GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag poly... 30 2.9
79GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; C... 30 2.9
80POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 2.9
81GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp... 30 2.9
82GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; ... 30 2.9
83GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: ... 30 2.9
84GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; ... 30 2.9
85GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 2.9
86GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 2.9
87GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (... 30 2.9
88POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 2.9
89GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polypro... 30 2.9
90GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; ... 30 2.9
91GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; ... 30 2.9
92GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; ... 30 2.9
93GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; C... 30 2.9
94GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (... 30 3.8
95Y493_RICPR (Q9ZD54) Putative aldolase class 2 protein RP493 30 3.8
96POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 3.8
97POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 3.8
98ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6 30 3.8
99GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; ... 30 3.8
100GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 3.8
101ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6 30 3.8
102POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 3.8
103POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 3.8
104POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 30 3.8
105GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ... 30 3.8
106GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; ... 30 3.8
107GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 3.8
108GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 3.8
109GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 3.8
110GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: ... 29 4.9
111GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 4.9
112TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-li... 29 4.9
113GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 4.9
114POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 4.9
115POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 4.9
116POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 6.4
117POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 6.4
118GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 6.4
119GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosp... 29 6.4
120GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 6.4
121GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 6.4
122GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 6.4
123POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 6.4
124POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 6.4
125POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 6.4
126POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 6.4
127GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 6.4
128POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 6.4
129GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 6.4
130GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 6.4
131GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; ... 28 8.4
132RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc... 28 8.4
133MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synth... 28 8.4
134ZCH10_HUMAN (Q8TBK6) Zinc finger CCHC domain-containing protein 10 28 8.4
135RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc... 28 8.4 
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           +CGEEGH+SR+CP                         CF CGE+GH SR+CPN A
Sbjct: 47  RCGEEGHMSRECPNEARSGAAGAMT-------------CFRCGEAGHMSRDCPNSA 89



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXX---GCFSCGESGHFSRECPN 295
           KCG+EGH+SRDCP                            C+ CG++GH SR+CPN
Sbjct: 101 KCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPN 157



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           CG+EGH +R+CP+                        CF CGE GH SRECPN+A
Sbjct: 21  CGKEGHYARECPEADSKGDERSTT-------------CFRCGEEGHMSRECPNEA 62



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/54 (42%), Positives = 26/54 (48%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 295
           KCG+ GHISRDCP                         C+ CGESGH SRECP+
Sbjct: 172 KCGDAGHISRDCPNGQGGYSGAGDRK------------CYKCGESGHMSRECPS 213



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 295
           KCG+ GHISRDCP                         C+ CG++GH SR+CPN
Sbjct: 144 KCGDAGHISRDCPNGQGGYSGAGDRT------------CYKCGDAGHISRDCPN 185



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 295
           KCG+ GHISR+CP+                        C+ CGE+GH SR+CP+
Sbjct: 226 KCGKPGHISRECPEAGGSYGGSRGGGDRT---------CYKCGEAGHISRDCPS 270



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECP 298
           KCGE GH+SR+CP                         C+ CG+ GH SRECP
Sbjct: 200 KCGESGHMSRECPSAGSTGSGDRA--------------CYKCGKPGHISRECP 238



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 295
           +CGE GH+SRDCP                         C+ CG+ GH SR+CP+
Sbjct: 74  RCGEAGHMSRDCPNSAKPGAAKGFE-------------CYKCGQEGHLSRDCPS 114



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C +CG+ GH++RECP
Sbjct: 18  CRNCGKEGHYARECP 32
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>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           KCGE GH +RDC Q                        C+ CGE GHF+REC
Sbjct: 161 KCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGG---CYKCGEDGHFAREC 209



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           CF CGESGHF+R+C
Sbjct: 159 CFKCGESGHFARDC 172
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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXX----GCFSCGESGHFSREC 301
           KCGE GH++R+C Q                            C+SCGESGHF+R+C
Sbjct: 140 KCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           CF CGE GH +REC
Sbjct: 138 CFKCGEPGHMAREC 151
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>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 172

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           CGE GHI +DC +                        C+ CGESGH +REC  +A
Sbjct: 117 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLARECTIEA 170



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXX--GCFSCGESGHFSREC 301
           KCG  GH +R+CP                           C+ CGESGH +++C
Sbjct: 8   KCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GH++RDC                          C+SCGE GH  ++C
Sbjct: 96  CGKPGHLARDCDHADEQK-------------------CYSCGEFGHIQKDC 127



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           +CGE GH+++DC                          C++CG  GH +++C
Sbjct: 50  RCGESGHLAKDCD-------------------LQEDKACYNCGRGGHIAKDC 82



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           CF CG +GH++RECP
Sbjct: 6   CFKCGRTGHWARECP 20



 Score = 32.3 bits (72), Expect = 0.58
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG  GHI++DC +                        C++CG+ GH +R+C
Sbjct: 72  CGRGGHIAKDCKEPKREREQC----------------CYNCGKPGHLARDC 106
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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           CGE GHI +DC +                        C+ CGESGH +REC  +A
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLARECTIEA 175



 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
 Frame = -1

Query: 456 KCGEEGHISRDCP--------QXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           KCG  GH +R+CP                                 C+ CGESGH +++C
Sbjct: 8   KCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GH++RDC                          C+SCGE GH  ++C
Sbjct: 101 CGKPGHLARDCDHADEQK-------------------CYSCGEFGHIQKDC 132



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           +CGE GH+++DC                          C++CG  GH +++C
Sbjct: 56  RCGESGHLAKDCD--------------------LQEDACYNCGRGGHIAKDC 87



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 32.3 bits (72), Expect = 0.58
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG  GHI++DC +                        C++CG+ GH +R+C
Sbjct: 77  CGRGGHIAKDCKEPKREREQC----------------CYNCGKPGHLARDC 111
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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           CGE GHI +DC +                        C+ CGESGH +REC  +A
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLARECTIEA 175



 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
 Frame = -1

Query: 456 KCGEEGHISRDCP--------QXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           KCG  GH +R+CP                                 C+ CGESGH +++C
Sbjct: 8   KCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GH++RDC                          C+SCGE GH  ++C
Sbjct: 101 CGKPGHLARDCDHADEQK-------------------CYSCGEFGHIQKDC 132



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           +CGE GH+++DC                          C++CG  GH +++C
Sbjct: 56  RCGESGHLAKDCD--------------------LQEDACYNCGRGGHIAKDC 87



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 32.3 bits (72), Expect = 0.58
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG  GHI++DC +                        C++CG+ GH +R+C
Sbjct: 77  CGRGGHIAKDCKEPKREREQC----------------CYNCGKPGHLARDC 111
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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           CGE GHI +DC +                        C+ CGESGH +REC  +A
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLARECTIEA 175



 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
 Frame = -1

Query: 456 KCGEEGHISRDCP--------QXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           KCG  GH +R+CP                                 C+ CGESGH +++C
Sbjct: 8   KCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GH++RDC                          C+SCGE GH  ++C
Sbjct: 101 CGKPGHLARDCDHADEQK-------------------CYSCGEFGHIQKDC 132



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           +CGE GH+++DC                          C++CG  GH +++C
Sbjct: 56  RCGESGHLAKDCD--------------------LQEDACYNCGRGGHIAKDC 87



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 32.3 bits (72), Expect = 0.58
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG  GHI++DC +                        C++CG+ GH +R+C
Sbjct: 77  CGRGGHIAKDCKEPKREREQC----------------CYNCGKPGHLARDC 111
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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           CGE GHI +DC +                        C+ CGESGH +REC  +A
Sbjct: 123 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLARECTIEA 176



 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
 Frame = -1

Query: 456 KCGEEGHISRDCP--------QXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           KCG  GH +R+CP                                 C+ CGESGH +++C
Sbjct: 8   KCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GH++RDC                          C+SCGE GH  ++C
Sbjct: 102 CGKPGHLARDCDHADEQK-------------------CYSCGEFGHIQKDC 133



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           +CGE GH+++DC                          C++CG  GH +++C
Sbjct: 56  RCGESGHLAKDCD-------------------LQEDEACYNCGRGGHIAKDC 88



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 32.3 bits (72), Expect = 0.58
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG  GHI++DC +                        C++CG+ GH +R+C
Sbjct: 78  CGRGGHIAKDCKEPKREREQC----------------CYNCGKPGHLARDC 112
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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           C  EGH S +CP+                        CF+CGE GH S ECPN A
Sbjct: 247 CKGEGHRSAECPEPPRG--------------------CFNCGEQGHRSNECPNPA 281



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           C + GH S DCP+                        C++C + GH SREC
Sbjct: 163 CQQPGHRSSDCPEPRKEREPRV---------------CYNCQQPGHTSREC 198
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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 289
           C  EGH S +CP+                        CF+CGE GH S ECPN A
Sbjct: 458 CKGEGHRSAECPEPPRG--------------------CFNCGEQGHRSNECPNPA 492



 Score = 31.6 bits (70), Expect = 0.99
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           C + GH S DCP+                        C++C + GH SR+CP +
Sbjct: 376 CQQPGHRSNDCPEPKKEREPRV---------------CYNCQQPGHNSRDCPEE 414



 Score = 31.6 bits (70), Expect = 0.99
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           C + GH S DCP+                        C++C + GH SR+CP +
Sbjct: 262 CQQPGHRSNDCPEPKKEREPRV---------------CYNCQQPGHNSRDCPEE 300
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>GIS2_YEAST (P53849) Zinc-finger protein GIS2|
          Length = 153

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECP 298
           CG+ GH+SRDC                          C++C E+GH S++CP
Sbjct: 121 CGQAGHMSRDCQNDRL---------------------CYNCNETGHISKDCP 151



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXX-----------XXXXXXXXXGCFSCGESGHFSR 307
           C + GHISR+CP+                                   C++CG++GH SR
Sbjct: 70  CNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSR 129

Query: 306 ECPN 295
           +C N
Sbjct: 130 DCQN 133



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -1

Query: 453 CGEEGHISRDC--PQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECP 298
           C + GH+  DC  P+                        CF+C ++GH SRECP
Sbjct: 28  CNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQRCFNCNQTGHISRECP 81
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>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQP-VRSECP 253
           CF CG+ GHF++ C   AH  A+P V   CP
Sbjct: 548 CFKCGKKGHFAKNCHEHAHNNAEPKVPGLCP 578
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>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog|
          Length = 179

 Score = 35.0 bits (79), Expect = 0.090
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXX-XXXXGCFSCGESGHFSRECPN 295
           CGE GH +R+C +                         C++CG +GH  R+CP+
Sbjct: 22  CGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPS 75



 Score = 34.3 bits (77), Expect = 0.15
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           KCG  GHI+RDC                          C++CG  GH +R+C
Sbjct: 87  KCGRVGHIARDC-------RTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG  GH+ RDCP                         C+ CG  GH +R+C
Sbjct: 63  CGTAGHLVRDCPSSPNPRQGAE---------------CYKCGRVGHIARDC 98



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           C++CGE+GH +REC
Sbjct: 19  CYNCGENGHQAREC 32
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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVRSECPVPLRSFSYR 226
           C+ CG SGH+S+ECP + + +A   R E P PL +  YR
Sbjct: 170 CYRCGRSGHWSKECP-RLYGSAGGGR-EPPSPLSAGGYR 206
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>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5|
          Length = 475

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQ 274
           C  CG  GHF+R+CP K H A Q
Sbjct: 445 CLYCGYPGHFARDCPVKPHQALQ 467
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>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline|
           helicase 4)
          Length = 1156

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG EGH + DC Q                        C +CG+ GHF+++C N+
Sbjct: 621 CGIEGHFAVDCDQPKVPRGP-----------------CRNCGQEGHFAKDCQNE 657



 Score = 32.3 bits (72), Expect = 0.58
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH ++DC                          C  C E GH+  ECP +
Sbjct: 644 CGQEGHFAKDCQNERVRMEPTEP--------------CRRCAEEGHWGYECPTR 683



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CGEEGHIS++C +                        C +C + GHF+ +C
Sbjct: 575 CGEEGHISKECDK-----------------PKVPRFPCRNCEQLGHFASDC 608



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           C +CGE GH S+EC
Sbjct: 572 CHNCGEEGHISKEC 585
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>AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-interacting RING|
           finger protein 2)
          Length = 344

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           C + GH+ +DCP                         C  C E GH+  +CP+K
Sbjct: 66  CSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQ--CSKCDEVGHYRSQCPHK 117
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>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 519

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+SGH    CP++
Sbjct: 392 CGKEGHSARQC-------------------RAPRRQGCWKCGKSGHIMANCPDR 426
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>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9|
          Length = 271

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPN 295
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/52 (30%), Positives = 19/52 (36%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECP 298
           CGE GH+SR CP                        GC  CG   H  ++CP
Sbjct: 189 CGEMGHLSRSCPD-------------NPKGLYADGGGCKLCGSVEHLKKDCP 227
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>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT|
           1-94 [Includes: Protease (EC 3.4.23.-); Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPN 295
           C++C + GHF R+CPN
Sbjct: 232 CYNCNQPGHFKRDCPN 247
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>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+SGH    CP++
Sbjct: 392 CGKEGHSARQC-------------------RAPRRQGCWKCGKSGHIMANCPDR 426
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>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9|
          Length = 273

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPN 295
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CGE GH+SR CP                         C  CG   HF ++C
Sbjct: 189 CGEMGHLSRSCPD-------------NTKGVYADGGSCKLCGSVEHFKKDC 226
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>GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 519

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH 286
           C  C E GH++RECP K H
Sbjct: 490 CAYCKEKGHWARECPRKKH 508
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>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GH+ R+C Q                        C+ CG+ GH +R C +K
Sbjct: 408 CGKTGHLKRNCKQQK----------------------CYHCGKPGHQARNCRSK 439
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>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GH+ R+C Q                        C+ CG+ GH +R C +K
Sbjct: 408 CGKTGHLKRNCKQQK----------------------CYHCGKPGHQARNCRSK 439
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>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG+ GH  +EC  +
Sbjct: 394 CGKEGHIARNC-------------------RAPRKKGCWKCGKEGHQMKECTER 428
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>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 503

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG+ GH  +EC  +
Sbjct: 394 CGKEGHIARNC-------------------RAPRKKGCWKCGKEGHQMKECTER 428
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>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13|
          Length = 166

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG  GH++RDC +                        C+SCG+ GH  ++C
Sbjct: 94  CGRLGHLARDCDRQKEQK-------------------CYSCGKLGHIQKDC 125



 Score = 32.0 bits (71), Expect = 0.76
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG  GHI++DC                          C++CG  GH +R+C
Sbjct: 70  CGRSGHIAKDCKDPKRERRQH----------------CYTCGRLGHLARDC 104



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXX-XXXXXXXGCFSCGESGHFSREC 301
           CG  GH +R CP+                         C+ CGESG  ++ C
Sbjct: 9   CGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC 60



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GHI +DC Q                        C+ CGE GH +  C
Sbjct: 115 CGKLGHIQKDCAQ----------------------VKCYRCGEIGHVAINC 143
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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
 Frame = -1

Query: 342  CFSCGESGHFSRECP--------NKAH*AAQPVRS 262
            CF CG++GH  RECP        N +  AAQ VR+
Sbjct: 1359 CFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRN 1393
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>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING|
           finger protein 1)
          Length = 360

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           C + GH+ R+CP                         C +C  +GH+  +CP+K
Sbjct: 79  CSQRGHLKRNCPHVICTYCGFMDDHYSQHCPKAII--CTNCNANGHYKSQCPHK 130
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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGQEGHWSKECP 176
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>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 250
           C+ C + GH++R+CP K   A  P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---ATGPPPGPCPI 373
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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/69 (26%), Positives = 23/69 (33%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKAH*AAQ 274
           C + GH+S++CP                         CF C   GH    CP        
Sbjct: 245 CDKRGHLSKNCP------------------LPRKVRRCFLCSRRGHLLYSCP-------A 279

Query: 273 PVRSECPVP 247
           P+   CPVP
Sbjct: 280 PLCEYCPVP 288



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNK 292
           C+ C + GH+  ECP +
Sbjct: 349 CYHCAQKGHYGHECPER 365
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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>COAT_SOCMV (P15627) Coat protein|
          Length = 441

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVR 265
           C+ C E GH++ ECP K +  AQ ++
Sbjct: 383 CWLCHEEGHYANECPKKDNKKAQTLK 408
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>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC---PNKAH* 283
           CG+ GH+S  C                          CF C + GHFS++C   P     
Sbjct: 386 CGKPGHLSSQC---------------------RAPKVCFKCKQPGHFSKQCRSVPKNGKQ 424

Query: 282 AAQ--PVRSECPVPLRSFSYRLTLQQ 211
            AQ  P +   P+  +S   +  +Q+
Sbjct: 425 GAQGRPQKQTFPIQQKSQHNKSVVQE 450
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>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC---PNKAH* 283
           CG+ GH+S  C                          CF C + GHFS++C   P     
Sbjct: 386 CGKPGHLSSQC---------------------RAPKVCFKCKQPGHFSKQCRSVPKNGKQ 424

Query: 282 AAQ--PVRSECPVPLRSFSYRLTLQQ 211
            AQ  P +   P+  +S   +  +Q+
Sbjct: 425 GAQGRPQKQTFPIQQKSQHNKSVVQE 450
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>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC---PNKAH* 283
           CG+ GH+S  C                          CF C + GHFS++C   P     
Sbjct: 386 CGKPGHLSSQC---------------------RAPKVCFKCKQPGHFSKQCRSVPKNGKQ 424

Query: 282 AAQ--PVRSECPVPLRSFSYRLTLQQ 211
            AQ  P +   P+  +S   +  +Q+
Sbjct: 425 GAQGRPQKQTFPIQQKSQHNKSVVQE 450
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>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG++GH   +CP +
Sbjct: 393 CGKEGHSARQC-------------------RAPRRQGCWKCGKAGHIMAKCPER 427
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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 295
           CG+ GH+ R+C                          CF CG+ GH +++C N
Sbjct: 395 CGKFGHMQRECK-------------------APRQIKCFKCGKIGHMAKDCKN 428



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           CF+CG+ GH  REC
Sbjct: 392 CFNCGKFGHMQREC 405
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>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG++GH   +CP +
Sbjct: 393 CGKEGHSARQC-------------------RAPRRQGCWKCGKAGHIMAKCPER 427
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>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG++GH   +CP +
Sbjct: 394 CGKEGHSARQC-------------------RAPRRQGCWKCGKTGHVMAKCPER 428
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>ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3|
          Length = 404

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKAH 286
           +CGEEGH+S  C +                        C  CG+ GH   +CP   H
Sbjct: 356 RCGEEGHLSPYCRKGIV---------------------CNLCGKRGHAFAQCPKAVH 391



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = -1

Query: 456 KCGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           KCG   H+S  C Q                        CF CGE GH S  C
Sbjct: 338 KCGSRTHMSGSCTQDR----------------------CFRCGEEGHLSPYC 367
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>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 428

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 250
           CF CG++GH+SR+C        +P    CP+
Sbjct: 356 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 381
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>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 250
           CF CG++GH+SR+C        +P    CP+
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382
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>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 250
           CF CG++GH+SR+C        +P    CP+
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382
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>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC-------------------KAPRKKGCWKCGKEGHQMKDCTER 428
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>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH ++ C                         GC+ CG+SGH    CP +
Sbjct: 393 CGKEGHSAKQC-------------------RAPRRQGCWKCGKSGHIMANCPER 427
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>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH ++ C                         GC+ CG+SGH    CP +
Sbjct: 393 CGKEGHSAKQC-------------------RAPRRQGCWKCGKSGHIMANCPER 427
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>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC-------------------KAPRKKGCWKCGKEGHQMKDCTER 428
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>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG++GH   +CP +
Sbjct: 394 CGKEGHSARQC-------------------RAPRRQGCWKCGKTGHVMAKCPER 428
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>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG++GH   +CP +
Sbjct: 397 CGKEGHSARQC-------------------RAPRRQGCWKCGKAGHVMAKCPER 431
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>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1464

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG++GH +R C                         GC+ CG++GH   +CP +
Sbjct: 392 CGKQGHTARQC-------------------RAPRRQGCWKCGKTGHIMSKCPER 426
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>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I|
          Length = 218

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXX-------XGCFSCGESGHFSREC 301
           C ++GHI +DCP+                               CF C E+GH S +C
Sbjct: 82  CRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQC 139
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>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+ GH    CP++
Sbjct: 393 CGKEGHSARQC-------------------RAPRRQGCWKCGKPGHIMTNCPDR 427
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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GH+ R CP+                        C  CG+ GH +++C
Sbjct: 402 CGKFGHMQRQCPEPRKTK-------------------CLKCGKLGHLAKDC 433



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVRSEC 256
           C++CG+ GH  R+CP       +P +++C
Sbjct: 399 CYNCGKFGHMQRQCP-------EPRKTKC 420
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>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+ GH    CP++
Sbjct: 393 CGKEGHSARQC-------------------RAPRRQGCWKCGKPGHIMTNCPDR 427
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>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GH+ R CP+                        C  CG+ GH +++C
Sbjct: 403 CGKFGHMQRQCPEPRKIK-------------------CLKCGKPGHLAKDC 434



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C++CG+ GH  R+CP
Sbjct: 400 CYNCGKFGHMQRQCP 414
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>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG++GH +R C                         GC+ CG+SGH    CP +
Sbjct: 393 CGKDGHSARQC-------------------RAPRRQGCWKCGKSGHVMANCPER 427
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>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG++GH +R C                         GC+ CG++GH   +CP +
Sbjct: 392 CGKQGHTARQC-------------------RAPRRQGCWKCGKTGHIMSKCPER 426
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>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+ GH    CP++
Sbjct: 393 CGKEGHSARQC-------------------RAPRRQGCWKCGKPGHIMTNCPDR 427
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>COAT_FMVD (P09519) Probable coat protein|
          Length = 489

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNK 292
           C+ C E GH++ ECPN+
Sbjct: 411 CWICTEEGHYANECPNR 427
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>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 549

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG  GH  ++C  +
Sbjct: 394 CGKEGHIARNC-------------------KAPRKKGCWKCGREGHQMKDCTER 428
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>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG++GH +R C                         GC+ CG+SGH    CP +
Sbjct: 393 CGKDGHSARQC-------------------RAPRRQGCWKCGKSGHVMANCPER 427
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>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+R+C                         GC+ CG  GH  ++C  +
Sbjct: 394 CGKEGHIARNC-------------------KAPRKKGCWKCGREGHQMKDCTER 428
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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+ GH+ R CP+                        C  CG+ GH +++C
Sbjct: 407 CGKFGHMQRQCPEPRKMR-------------------CLKCGKPGHLAKDC 438



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C++CG+ GH  R+CP
Sbjct: 404 CYNCGKFGHMQRQCP 418
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>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+ GH    CP++
Sbjct: 393 CGKEGHSARQC-------------------RAPRRQGCWKCGKPGHIMTNCPDR 427
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>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein|
           p25; Core protein p16]
          Length = 508

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH++R+C                         GC+ CG+ GH  ++C  +
Sbjct: 405 CGKEGHLARNC-------------------KAPRRKGCWRCGQEGHQMKDCTGR 439
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>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 622

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP--NKAH*AAQPVRSE 259
           C++CG+ GH  R CP  NK +   Q + S+
Sbjct: 592 CYNCGQIGHLKRSCPGLNKQNIINQAINSK 621
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>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein|
           p2A; Core protein p2B; Core protein p10; Capsid protein
           p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)]
          Length = 701

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNK 292
           C++CG  GH+  +CP K
Sbjct: 509 CYTCGSPGHYQAQCPKK 525
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>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1549

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+ GH    CP +
Sbjct: 393 CGKEGHSARQC-------------------RAPRRQGCWKCGKPGHIMANCPER 427
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>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           CFSCG++GH  R+C
Sbjct: 526 CFSCGKTGHIKRDC 539
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>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 441

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GH +R C Q                        C +CG+ GH  +EC  K
Sbjct: 384 CGKPGHQARQCRQGII---------------------CHNCGKRGHMQKECRGK 416
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>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 657

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH 286
           CF CG  GHF++ C    H
Sbjct: 549 CFKCGRKGHFAKNCHEHIH 567
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>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 446

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GH++R C Q                        C  CG+ GH  ++C  K
Sbjct: 389 CGKPGHLARQCRQGII---------------------CHHCGKRGHMQKDCRQK 421
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>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+ GH    CP +
Sbjct: 393 CGKEGHSARQC-------------------RAPRRQGCWKCGKPGHIMANCPER 427
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>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 504

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH++R+C                         GC+ CG+ GH  ++C  +
Sbjct: 400 CGKEGHLARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 434
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>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 250
           C+ C + GH++R+CP K      P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---TTGPPPGPCPI 373
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>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1439

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH++R+C                         GC+ CG+ GH  ++C  +
Sbjct: 400 CGKEGHLARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 434
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>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 666

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/62 (24%), Positives = 23/62 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKAH*AAQ 274
           CG+ GH+ R CP                         C  CG+  H++ +C +K     Q
Sbjct: 547 CGQIGHLKRSCP---VLNKQNIINQAITAKNKKPSGLCPKCGKGKHWANQCHSKFDKDGQ 603

Query: 273 PV 268
           P+
Sbjct: 604 PL 605



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           C++CG+ GH  R CP
Sbjct: 544 CYNCGQIGHLKRSCP 558
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>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GH++R C Q                        C  CG+ GH  ++C  K
Sbjct: 390 CGKPGHLARQCRQGII---------------------CHHCGKRGHMQKDCRQK 422
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>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GH++R C Q                        C  CG+ GH  ++C  K
Sbjct: 390 CGKPGHLARQCRQGII---------------------CHHCGKRGHMQKDCRQK 422
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>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GH++R C Q                        C  CG+ GH  ++C  K
Sbjct: 390 CGKPGHLARQCRQGII---------------------CHHCGKRGHMQKDCRQK 422
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>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GH++R C Q                        C  CG+ GH  ++C  K
Sbjct: 390 CGKPGHLARQCRQGII---------------------CHHCGKRGHMQKDCRQK 422
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>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core|
           protein p24; Core protein p12 (p15)]
          Length = 432

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 250
           CF CG+ GH+SR+C        +P    CP+
Sbjct: 362 CFRCGKVGHWSRDCTQ-----PRPPPGPCPL 387
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>Y493_RICPR (Q9ZD54) Putative aldolase class 2 protein RP493|
          Length = 231

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 222 TLQQVIHIPISISICRRSVTPCFP*EEESTMRDWFQ*YCWWRVV 91
           T+QQ + IP S+ IC+++V      EE+   RDW     W R++
Sbjct: 190 TIQQELIIP-SVEICKKTVKDLLSFEEDLGKRDW---EAWLRLI 229
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>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 531

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+EGH++R+C                         GC+ CG+ GH  ++C
Sbjct: 394 CGKEGHLARNC-------------------RAPRKKGCWKCGKEGHQMKDC 425
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>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1440

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 397 CGKEGHIAKNC-------------------RAPRKRGCWKCGKEGHQMKDCTER 431
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>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 342  CFSCGESGHFSRECP 298
            CF CG  GH  +ECP
Sbjct: 1449 CFICGREGHIKKECP 1463



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 453  CGEEGHISRDCPQ 415
            CG EGHI ++CPQ
Sbjct: 1452 CGREGHIKKECPQ 1464
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>GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 506

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R C                         GC+ CG+  H   +CPN+
Sbjct: 396 CGKEGHSARQC-------------------RAPRRQGCWKCGKMDHVMAKCPNR 430
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>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 506

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 397 CGKEGHIAKNC-------------------RAPRKRGCWKCGKEGHQMKDCTER 431
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>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6|
          Length = 1495

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 342  CFSCGESGHFSRECP 298
            CF CG  GH  +ECP
Sbjct: 1453 CFICGREGHIKKECP 1467



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 453  CGEEGHISRDCPQ 415
            CG EGHI ++CPQ
Sbjct: 1456 CGREGHIKKECPQ 1468
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>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIAKNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIAKNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC|
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 1886

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNK 292
           C+ CG+ GH++ +C NK
Sbjct: 881 CYICGQEGHYANQCRNK 897
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>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 653

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           CF CG+ GHF+++C
Sbjct: 545 CFKCGKKGHFAKDC 558
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>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH ++ C                         GC+ CG++GH   +CP +
Sbjct: 397 CGKEGHSAKQC-------------------RAPRRQGCWKCGKTGHVMAKCPER 431
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>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIAKNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIAKNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 301
           CG+EGH++R+C                         GC+ CG+ GH  ++C
Sbjct: 394 CGKEGHLARNC-------------------RAPRKKGCWKCGKEGHQMKDC 425
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>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC|
           3.4.23.-)]
          Length = 827

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           CF+CG+ GHF ++C
Sbjct: 460 CFNCGKPGHFKKDC 473
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>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 498

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG  GH  ++C  +
Sbjct: 393 CGKEGHIAKNC-------------------RAPRKKGCWKCGREGHQMKDCTER 427
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>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 178  TYTNTDRYMYDLLQSQAVGKGTKGNGALRSDGLR 279
            TYT+  R++++ LQ Q +G    G   +  DGLR
Sbjct: 932  TYTSVARHIHEYLQRQVLGSSADGALLVSLDGLR 965
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>GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 500

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 396 CGKEGHIAKNC-------------------RAPRRKGCWKCGKEGHQLKDCTER 430
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>POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1435

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 396 CGKEGHIAKNC-------------------RAPRRKGCWKCGKEGHQLKDCTER 430
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>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1433

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG  GH  ++C  +
Sbjct: 393 CGKEGHIAKNC-------------------RAPRKKGCWKCGREGHQMKDCTER 427
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>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1436

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG  GH  ++C  +
Sbjct: 396 CGKEGHIAKNC-------------------RAPRKKGCWRCGREGHQMKDCTER 430
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>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1427

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH++++C                         GC+ CG+ GH  ++C  +
Sbjct: 388 CGKEGHLAKNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 422
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>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 501

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG  GH  ++C  +
Sbjct: 396 CGKEGHIAKNC-------------------RAPRKKGCWRCGREGHQMKDCTER 430
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>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNK 292
           CFSCG++GH  ++C ++
Sbjct: 526 CFSCGKTGHIRKDCKDE 542
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>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHTARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHTARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 500

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GHI+++C                         GC+ CG+ GH  ++C N+
Sbjct: 394 CGKVGHIAKNC-------------------RAPRKKGCWKCGKEGHQMKDCTNE 428
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>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHTARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHTARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHTARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 395 CGKEGHIAKNC-------------------RAPRKKGCWRCGKEGHQLKDCTER 429
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>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 492

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH++++C                         GC+ CG+ GH  ++C  +
Sbjct: 388 CGKEGHLAKNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 422
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>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1435

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+ GHI+++C                         GC+ CG+ GH  ++C N+
Sbjct: 394 CGKVGHIAKNC-------------------RAPRKKGCWKCGKEGHQMKDCTNE 428
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>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH +R+C                         GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHTARNC-------------------RAPRKKGCWKCGKEGHQMKDCTER 428
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>GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGHI+++C                         GC+ CG+ GH  ++C  +
Sbjct: 395 CGKEGHIAKNC-------------------RAPRKKGCWRCGKEGHQLKDCTER 429
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>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 510

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -1

Query: 453 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 292
           CG+EGH ++ C                         GC+ CG+ GH   +CP +
Sbjct: 396 CGKEGHTAKQCK-------------------APRRQGCWKCGKPGHQMAKCPER 430
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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R)
          Length = 1790

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           CF CG+ GH+ + CP
Sbjct: 162 CFRCGKPGHYIKNCP 176
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>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5|
           protein)
          Length = 476

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 342 CFSCGESGHFSREC 301
           C  CG++GHFSR+C
Sbjct: 299 CKICGQTGHFSRDC 312
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>ZCH10_HUMAN (Q8TBK6) Zinc finger CCHC domain-containing protein 10|
          Length = 192

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 342 CFSCGESGHFSRECPNKAH*AAQPVR-SECPVPLRSFSYRLTLQQVI 205
           C  C E GH++ EC  K     +P R +E    L+    RL LQQ I
Sbjct: 45  CQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSI 91
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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R) (Retinoblastoma-binding Q
           protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 342 CFSCGESGHFSRECP 298
           CF CG+ GH+ + CP
Sbjct: 161 CFRCGKPGHYIKNCP 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,046,211
Number of Sequences: 219361
Number of extensions: 820586
Number of successful extensions: 2386
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 1839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2220
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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