ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB161682.1| Triticum aestivum WCSP2 mRNA for cold shock doma... 454 e-124
2dbj|AB158409.1| Triticum aestivum GRP mRNA for putative glycine-... 454 e-124
3emb|AJ234726.1|HVU234726 Hordeum vulgare genomic DNA fragment; c... 398 e-108
4dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock prot... 214 2e-52
5dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock doma... 206 5e-50
6ref|XM_479920.1| Oryza sativa (japonica cultivar-group), mRNA 60 7e-06
7ref|XM_507115.1| PREDICTED Oryza sativa (japonica cultivar-group... 60 7e-06
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
9dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
10dbj|AK101577.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
11dbj|AK070034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
12ref|XM_955512.1| Neurospora crassa OR74A hypothetical protein (N... 54 4e-04
13ref|XM_331314.1| Neurospora crassa OR74A hypothetical protein (N... 54 4e-04
14gb|BT016623.1| Zea mays clone Contig456 mRNA sequence 52 0.002
15gb|AY104445.1| Zea mays PCO063886 mRNA sequence 52 0.002
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
17dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
18ref|XM_390462.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 46 0.100
19gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.39
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
21dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
22dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
23dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
24gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.39
25emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 44 0.39
26ref|XM_530107.1| PREDICTED: Pan troglodytes LOC456635 (LOC456635... 42 1.6
27ref|NM_020317.3| Homo sapiens chromosome 1 open reading frame 63... 42 1.6
28ref|NG_003255.2| Homo sapiens Rhesus blood group cluster (RHD/RH... 42 1.6
29gb|BC041843.1| Homo sapiens chromosome 1 open reading frame 63, ... 42 1.6
30emb|AL049299.1|HSM800084 Homo sapiens genomic DNA; cDNA DKFZp564... 42 1.6
31emb|CR859914.1| Pongo pygmaeus mRNA; cDNA DKFZp469M2120 (from cl... 42 1.6
32emb|CR598998.1| full-length cDNA clone CS0DI073YL02 of Placenta ... 42 1.6
33dbj|AK027318.1| Homo sapiens cDNA FLJ14412 fis, clone HEMBA10046... 42 1.6
34ref|XM_693626.1| PREDICTED: Danio rerio similar to cellular nucl... 42 1.6
35dbj|AB169364.1| Macaca fascicularis testis cDNA, clone: QtsA-192... 42 1.6
36gb|BC065040.1| Homo sapiens chromosome 1 open reading frame 63, ... 42 1.6
37gb|BC001892.1| Homo sapiens chromosome 1 open reading frame 63, ... 42 1.6
38gb|AF267856.1|AF267856 Homo sapiens HT033 mRNA, complete cds 42 1.6
39gb|AF247168.1|AF247168 Homo sapiens NPD014 (NPD014) mRNA, comple... 42 1.6
40emb|BX649435.8| Human DNA sequence from clone RP13-398I3 on chro... 42 1.6
41tpe|BN000065.1|HSA000065 TPA: TPA_inf: Homo sapiens SMP1 gene, R... 42 1.6
42dbj|AP001258.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.6
43emb|AL031432.1|HS465N24 Human DNA sequence from clone RP3-465N24... 42 1.6
44emb|CR855375.8| Zebrafish DNA sequence from clone CH211-159E12 i... 42 1.6
45emb|AL953882.5| Human DNA sequence from clone RP4-706G24 on chro... 42 1.6
46gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
47emb|CT009481.4| Human DNA sequence from clone DAAP-143K21 on chr... 40 6.1
48gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001... 40 6.1
49gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B0702... 40 6.1
50gb|DQ249178.1| Homo sapiens isolate 388CLS44 haplotype HLA-B5701... 40 6.1
51gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B1501... 40 6.1
52gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B0801... 40 6.1
53gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B0801... 40 6.1
54emb|BX247900.8| Human DNA sequence from clone DASS-357P10 on chr... 40 6.1
55emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on c... 40 6.1
56emb|AL663093.10| Human DNA sequence from clone XXbac-31G15 on ch... 40 6.1
57emb|AL669830.9| Human DNA sequence from clone XXbac-118E17 on ch... 40 6.1
58emb|AL669876.7| Human DNA sequence from clone RP11-190L2 on chro... 40 6.1
59emb|AL023694.1|HS511E16 Human DNA sequence from clone RP3-511E16... 40 6.1
60emb|CR759772.4| Human DNA sequence from clone DAMC-192G6 on chro... 40 6.1
61emb|CR847993.4| Human DNA sequence from clone DADB-349N3 on chro... 40 6.1
62emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chro... 40 6.1
63dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
64dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 6.1
65dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 6.1
66gb|M94390.1|LEIHEXBP Leishmania major HEXBP DNA binding protein ... 40 6.1
67dbj|AB023048.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 6.1 
>dbj|AB161682.1| Triticum aestivum WCSP2 mRNA for cold shock domain protein 2,
           complete cds
          Length = 990

 Score =  454 bits (229), Expect = e-124
 Identities = 299/320 (93%), Gaps = 3/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  tccatccaatacatagagatagatcagtctgtccacatcagacgacacaacaaagataac 82
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 933 tccatccaatacatagagatagatcagtctgtccacatcagacgacacgacaa-gataac 875

                                                                       
Query: 83  ttcgaacaaacaacacgccaccagcaatactactggaaccaatctcgcatcgtcgattct 142
           ||||||| ||||| |  |||||| ||||||| |||||||||| |||||||||||||||||
Sbjct: 874 ttcgaacgaacaataatccaccaacaatacttctggaaccaagctcgcatcgtcgattct 815

                                                                       
Query: 143 tcttcctaggggaagcacggggtaacactacggcgacatatactaatactgataggtata 202
           |||||||| | ||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 814 tcttcctacgagaagcacggg--aacactacggcgacatatactaatactgataggtata 757

                                                                       
Query: 203 tgtatgacttgctgcagagtcaggcggtaggaaaaggaacgaaggggaacggggcactca 262
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 756 ggtatgacttgctgcagagtcaggcggtaggaaaaggagcgaaggggaacggggaactca 697

                                                                       
Query: 263 gatctgacgggctgcgccgcctagtgagccttgttggggcactcgcgggagaagtggccg 322
           |||||||||||| ||||||||||||  | |||||||||||||||||| ||||||||||||
Sbjct: 696 gatctgacgggcagcgccgcctagttggtcttgttggggcactcgcgcgagaagtggccg 637

                               
Query: 323 gactcgccgcaggagaagca 342
           ||||||||||||||||||||
Sbjct: 636 gactcgccgcaggagaagca 617



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctgggggcagtccctggagatgtggccctcctcgccgcactt 506
to top
>dbj|AB158409.1| Triticum aestivum GRP mRNA for putative glycine-rich protein,
           complete cds
          Length = 996

 Score =  454 bits (229), Expect = e-124
 Identities = 299/320 (93%), Gaps = 3/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  tccatccaatacatagagatagatcagtctgtccacatcagacgacacaacaaagataac 82
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 933 tccatccaatacatagagatagatcagtctgtccacatcagacgacacgacaa-gataac 875

                                                                       
Query: 83  ttcgaacaaacaacacgccaccagcaatactactggaaccaatctcgcatcgtcgattct 142
           ||||||| ||||| |  |||||| ||||||| |||||||||| |||||||||||||||||
Sbjct: 874 ttcgaacgaacaataatccaccaacaatacttctggaaccaagctcgcatcgtcgattct 815

                                                                       
Query: 143 tcttcctaggggaagcacggggtaacactacggcgacatatactaatactgataggtata 202
           |||||||| | ||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 814 tcttcctacgagaagcacggg--aacactacggcgacatatactaatactgataggtata 757

                                                                       
Query: 203 tgtatgacttgctgcagagtcaggcggtaggaaaaggaacgaaggggaacggggcactca 262
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 756 ggtatgacttgctgcagagtcaggcggtaggaaaaggagcgaaggggaacggggaactca 697

                                                                       
Query: 263 gatctgacgggctgcgccgcctagtgagccttgttggggcactcgcgggagaagtggccg 322
           |||||||||||| ||||||||||||  | |||||||||||||||||| ||||||||||||
Sbjct: 696 gatctgacgggcagcgccgcctagttggtcttgttggggcactcgcgcgagaagtggccg 637

                               
Query: 323 gactcgccgcaggagaagca 342
           ||||||||||||||||||||
Sbjct: 636 gactcgccgcaggagaagca 617



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctgggggcagtccctggagatgtggccctcctcgccgcactt 506
to top
>emb|AJ234726.1|HVU234726 Hordeum vulgare genomic DNA fragment; clone MWG2034.rev
          Length = 312

 Score =  398 bits (201), Expect = e-108
 Identities = 210/213 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgacttgcataacttagttcattccatccaatacatagagatagatcagtctgtccacat 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 213 cgacttgcataacttagttcatcccatccaatacatagagatagatcagtctgtccacat 154

                                                                       
Query: 61  cagacgacacaacaaagataacttcgaacaaacaacacgccaccagcaatactactggaa 120
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 153 cagacgacacgacaaagataacttcaaacaaacaacacgccaccagcaatactactggaa 94

                                                                       
Query: 121 ccaatctcgcatcgtcgattcttcttcctaggggaagcacggggtaacactacggcgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ccaatctcgcatcgtcgattcttcttcctaggggaagcacggggtaacactacggcgaca 34

                                            
Query: 181 tatactaatactgataggtatatgtatgacttg 213
           |||||||||||||||||||||||||||||||||
Sbjct: 33  tatactaatactgataggtatatgtatgacttg 1
to top
>dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds
          Length = 1029

 Score =  214 bits (108), Expect = 2e-52
 Identities = 169/188 (89%), Gaps = 1/188 (0%)
 Strand = Plus / Minus

                                                                       
Query: 156 agcacggggtaacactacggcgacatatactaatactgataggtatatg-tatgacttgc 214
           |||| |||| ||| ||||||||||  |||||| |||||||||||||| | ||||||||||
Sbjct: 879 agcagggggaaacgctacggcgactaatactagtactgataggtatagggtatgacttgc 820

                                                                       
Query: 215 tgcagagtcaggcggtaggaaaaggaacgaaggggaacggggcactcagatctgacgggc 274
           |||||| ||||| |||||| |||||| ||| ||  |||||||||||||||||||| | ||
Sbjct: 819 tgcagaatcaggaggtaggtaaaggagcgagggtaaacggggcactcagatctgaagagc 760

                                                                       
Query: 275 tgcgccgcctagtgagccttgttggggcactcgcgggagaagtggccggactcgccgcag 334
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgtgccgcctagtgggccttgttggggcactcgcgggagaagtggccggactcgccgcag 700

                   
Query: 335 gagaagca 342
           ||||||||
Sbjct: 699 gagaagca 692



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctgggggcagtccctggagatgtggccctcctcgccgcactt 575



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgggggcagtccctggagatgtggccctcctcgccgcactt 461



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 94  aacacgccaccagcaatactactggaaccaatctcgcatcg 134
           ||||| ||||||||||| || |||||||||| |||| ||||
Sbjct: 923 aacacaccaccagcaattcttctggaaccaagctcggatcg 883
to top
>dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock domain protein 3,
           complete cds
          Length = 1025

 Score =  206 bits (104), Expect = 5e-50
 Identities = 168/188 (89%), Gaps = 1/188 (0%)
 Strand = Plus / Minus

                                                                       
Query: 156 agcacggggtaacactacggcgacatatactaatactgataggtatatg-tatgacttgc 214
           |||| |||| ||| ||||||||||  |||||| |||||||||||||| | ||||||||||
Sbjct: 867 agcagggggaaacgctacggcgactaatactagtactgataggtatagggtatgacttgc 808

                                                                       
Query: 215 tgcagagtcaggcggtaggaaaaggaacgaaggggaacggggcactcagatctgacgggc 274
           |||||| ||||| |||||| |||||| | | ||  |||||||||||||||||||| | ||
Sbjct: 807 tgcagaatcaggaggtaggtaaaggagcaagggtaaacggggcactcagatctgaagagc 748

                                                                       
Query: 275 tgcgccgcctagtgagccttgttggggcactcgcgggagaagtggccggactcgccgcag 334
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgtgccgcctagtgggccttgttggggcactcgcgggagaagtggccggactcgccgcag 688

                   
Query: 335 gagaagca 342
           ||||||||
Sbjct: 687 gagaagca 680



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctgggggcagtccctggagatgtggccctcctcgccgcactt 575



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 502 ctgggggcagtccctggagatgtggccatcttcgccgcactt 461



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 94  aacacgccaccagcaatactactggaaccaatctcgcatcg 134
           ||||| ||||||||||| || |||||||||| |||||||||
Sbjct: 911 aacacaccaccagcaattcttctggaaccaagctcgcatcg 871
to top
>ref|XM_479920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 963

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||| |||||||||||  |||||||||||||||||||||||
Sbjct: 545 ctgggagcagtccctggccatgtggccctcctcgccgcactt 504



 Score = 46.1 bits (23), Expect = 0.100
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 292 cttgttggggcactcgcgggagaagtggccggactcgccgcag 334
           |||| ||||||||||||| | || |||||||| ||||||||||
Sbjct: 674 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 632
to top
>ref|XM_507115.1| PREDICTED Oryza sativa (japonica cultivar-group), P0582D05.112 mRNA
          Length = 984

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||| |||||||||||  |||||||||||||||||||||||
Sbjct: 545 ctgggagcagtccctggccatgtggccctcctcgccgcactt 504



 Score = 46.1 bits (23), Expect = 0.100
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 292 cttgttggggcactcgcgggagaagtggccggactcgccgcag 334
           |||| ||||||||||||| | || |||||||| ||||||||||
Sbjct: 674 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 632
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                         
Query: 415     ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
               ||||| |||||||||||  |||||||||||||||||||||||
Sbjct: 1639116 ctgggagcagtccctggccatgtggccctcctcgccgcactt 1639157



 Score = 46.1 bits (23), Expect = 0.100
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 292     cttgttggggcactcgcgggagaagtggccggactcgccgcag 334
               |||| ||||||||||||| | || |||||||| ||||||||||
Sbjct: 1638987 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 1639029
to top
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0582D05
          Length = 150483

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 415   ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
             ||||| |||||||||||  |||||||||||||||||||||||
Sbjct: 38616 ctgggagcagtccctggccatgtggccctcctcgccgcactt 38657



 Score = 46.1 bits (23), Expect = 0.100
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 292   cttgttggggcactcgcgggagaagtggccggactcgccgcag 334
             |||| ||||||||||||| | || |||||||| ||||||||||
Sbjct: 38487 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 38529
to top
>dbj|AK101577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050L02, full
           insert sequence
          Length = 984

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||| |||||||||||  |||||||||||||||||||||||
Sbjct: 545 ctgggagcagtccctggccatgtggccctcctcgccgcactt 504



 Score = 46.1 bits (23), Expect = 0.100
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 292 cttgttggggcactcgcgggagaagtggccggactcgccgcag 334
           |||| ||||||||||||| | || |||||||| ||||||||||
Sbjct: 674 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 632
to top
>dbj|AK070034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A08, full
           insert sequence
          Length = 963

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||| |||||||||||  |||||||||||||||||||||||
Sbjct: 545 ctgggagcagtccctggccatgtggccctcctcgccgcactt 504



 Score = 46.1 bits (23), Expect = 0.100
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 292 cttgttggggcactcgcgggagaagtggccggactcgccgcag 334
           |||| ||||||||||||| | || |||||||| ||||||||||
Sbjct: 674 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 632
to top
>ref|XM_955512.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial
           mRNA
          Length = 552

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 296 ttggggcactcgcgggagaagtggccggactcgccgcag 334
           |||||||| || |||||||||||||| ||||||||||||
Sbjct: 473 ttggggcagtcacgggagaagtggccagactcgccgcag 435
to top
>ref|XM_331314.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial
           mRNA
          Length = 552

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 296 ttggggcactcgcgggagaagtggccggactcgccgcag 334
           |||||||| || |||||||||||||| ||||||||||||
Sbjct: 473 ttggggcagtcacgggagaagtggccagactcgccgcag 435
to top
>gb|BT016623.1| Zea mays clone Contig456 mRNA sequence
          Length = 1039

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||| ||||||||| |  |||||||||||||||||||||||
Sbjct: 583 ctgggagcagtcccttgccatgtggccctcctcgccgcactt 542



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 418 ggggcagtccctggagatgtggccctcctcgccgca 453
           ||||||||| | ||||||||||||||||| ||||||
Sbjct: 673 ggggcagtcgcgggagatgtggccctcctggccgca 638



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 293 ttgttggggcactcgcgggagaagtggcc 321
           ||||||||||| |||||||||| ||||||
Sbjct: 678 ttgttggggcagtcgcgggagatgtggcc 650
to top
>gb|AY104445.1| Zea mays PCO063886 mRNA sequence
          Length = 540

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 415 ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
           ||||| ||||||||| |  |||||||||||||||||||||||
Sbjct: 96  ctgggagcagtcccttgccatgtggccctcctcgccgcactt 55



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 418 ggggcagtccctggagatgtggccctcctcgccgca 453
           ||||||||| | ||||||||||||||||| ||||||
Sbjct: 186 ggggcagtcgcgggagatgtggccctcctggccgca 151



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 293 ttgttggggcactcgcgggagaagtggcc 321
           ||||||||||| |||||||||| ||||||
Sbjct: 191 ttgttggggcagtcgcgggagatgtggcc 163
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 421      gcagtccctggagatgtggccctcctcgccgcactt 456
                |||||||||||  |||||||||||||||| ||||||
Sbjct: 12354753 gcagtccctggccatgtggccctcctcgctgcactt 12354788
to top
>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0011P19
          Length = 150811

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 421   gcagtccctggagatgtggccctcctcgccgcactt 456
             |||||||||||  |||||||||||||||| ||||||
Sbjct: 40398 gcagtccctggccatgtggccctcctcgctgcactt 40433
to top
>ref|XM_390462.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10286.1)
           partial mRNA
          Length = 558

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 296 ttggggcactcgcgggagaagtggccggactcgccgcag 334
           |||||||| || |||||| ||||||| ||||||||||||
Sbjct: 479 ttggggcagtcacgggagtagtggccagactcgccgcag 441
to top
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0062E06, complete sequence
          Length = 158842

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 201   tatgtatgacttgctgcagagt 222
             ||||||||||||||||||||||
Sbjct: 78440 tatgtatgacttgctgcagagt 78419
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 201      tatgtatgacttgctgcagagt 222
                ||||||||||||||||||||||
Sbjct: 17788789 tatgtatgacttgctgcagagt 17788768
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 430      ggagatgtggccctcctcgccgcact 455
                ||||| ||||||||||||||||||||
Sbjct: 21441671 ggagaggtggccctcctcgccgcact 21441696
to top
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0489D11
          Length = 150757

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 430  ggagatgtggccctcctcgccgcact 455
            ||||| ||||||||||||||||||||
Sbjct: 3281 ggagaggtggccctcctcgccgcact 3306
to top
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1210_A07
          Length = 131394

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 430   ggagatgtggccctcctcgccgcact 455
             ||||| ||||||||||||||||||||
Sbjct: 58776 ggagaggtggccctcctcgccgcact 58801
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 201      tatgtatgacttgctgcagagt 222
                ||||||||||||||||||||||
Sbjct: 17883105 tatgtatgacttgctgcagagt 17883084
to top
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 415   ctgggggcagtccctggagatgtggccctcctcgccgcactt 456
             ||||| ||||||| |||  ||||||||||||| |||||||||
Sbjct: 84343 ctgggagcagtccttggccatgtggccctccttgccgcactt 84302
to top
>ref|XM_530107.1| PREDICTED: Pan troglodytes LOC456635 (LOC456635), mRNA
          Length = 923

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 553 gtggccgggctcgccgcaggagaag 577
to top
>ref|NM_020317.3| Homo sapiens chromosome 1 open reading frame 63 (C1orf63),
           transcript variant 2, mRNA
          Length = 1482

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 276 gtggccgggctcgccgcaggagaag 300
to top
>ref|NG_003255.2| Homo sapiens Rhesus blood group cluster (RHD/RHCE@) on chromosome 1
          Length = 208746

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 316   gtggccggactcgccgcaggagaag 340
             |||||||| ||||||||||||||||
Sbjct: 24771 gtggccgggctcgccgcaggagaag 24747
to top
>gb|BC041843.1| Homo sapiens chromosome 1 open reading frame 63, mRNA (cDNA clone
            MGC:43558 IMAGE:5269181), complete cds
          Length = 3079

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 316  gtggccggactcgccgcaggagaag 340
            |||||||| ||||||||||||||||
Sbjct: 1216 gtggccgggctcgccgcaggagaag 1240
to top
>emb|AL049299.1|HSM800084 Homo sapiens genomic DNA; cDNA DKFZp564P233 (from clone DKFZp564P233)
          Length = 2539

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 316  gtggccggactcgccgcaggagaag 340
            |||||||| ||||||||||||||||
Sbjct: 2427 gtggccgggctcgccgcaggagaag 2403
to top
>emb|CR859914.1| Pongo pygmaeus mRNA; cDNA DKFZp469M2120 (from clone DKFZp469M2120)
          Length = 2956

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 239 gtggccgggctcgccgcaggagaag 263
to top
>emb|CR598998.1| full-length cDNA clone CS0DI073YL02 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1399

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 229 gtggccgggctcgccgcaggagaag 253
to top
>dbj|AK027318.1| Homo sapiens cDNA FLJ14412 fis, clone HEMBA1004669, weakly similar
           to SON PROTEIN
          Length = 1962

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 236 gtggccgggctcgccgcaggagaag 260
to top
>ref|XM_693626.1| PREDICTED: Danio rerio similar to cellular nucleic acid-binding
           protein (LOC570180), partial mRNA
          Length = 317

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 421 gcagtccctggagatgtggcc 441
           |||||||||||||||||||||
Sbjct: 44  gcagtccctggagatgtggcc 24
to top
>dbj|AB169364.1| Macaca fascicularis testis cDNA, clone: QtsA-19294, similar to
           human NPD014 protein (NPD014), transcript variant 2,
           mRNA, RefSeq: NM_020317.3
          Length = 1456

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 236 gtggccgggctcgccgcaggagaag 260
to top
>gb|BC065040.1| Homo sapiens chromosome 1 open reading frame 63, transcript variant
           2, mRNA (cDNA clone MGC:74698 IMAGE:6147639), complete
           cds
          Length = 1417

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 214 gtggccgggctcgccgcaggagaag 238
to top
>gb|BC001892.1| Homo sapiens chromosome 1 open reading frame 63, transcript variant
           2, mRNA (cDNA clone MGC:1827 IMAGE:3534629), complete
           cds
          Length = 1431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 225 gtggccgggctcgccgcaggagaag 249
to top
>gb|AF267856.1|AF267856 Homo sapiens HT033 mRNA, complete cds
          Length = 2972

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 227 gtggccgggctcgccgcaggagaag 251
to top
>gb|AF247168.1|AF247168 Homo sapiens NPD014 (NPD014) mRNA, complete cds
          Length = 1972

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 gtggccggactcgccgcaggagaag 340
           |||||||| ||||||||||||||||
Sbjct: 228 gtggccgggctcgccgcaggagaag 252
to top
>emb|BX649435.8| Human DNA sequence from clone RP13-398I3 on chromosome 1, complete
             sequence
          Length = 14104

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 316   gtggccggactcgccgcaggagaag 340
             |||||||| ||||||||||||||||
Sbjct: 11630 gtggccgggctcgccgcaggagaag 11606
to top
>tpe|BN000065.1|HSA000065 TPA: TPA_inf: Homo sapiens SMP1 gene, RHD gene and RHCE gene
          Length = 315242

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 316    gtggccggactcgccgcaggagaag 340
              |||||||| ||||||||||||||||
Sbjct: 108214 gtggccgggctcgccgcaggagaag 108190
to top
>dbj|AP001258.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-103D1, complete
             sequence
          Length = 128654

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    aaacaacacgccaccagcaat 110
             |||||||||||||||||||||
Sbjct: 99914 aaacaacacgccaccagcaat 99894
to top
>emb|AL031432.1|HS465N24 Human DNA sequence from clone RP3-465N24 on chromosome 1p35.1-36.13
              Contains the gene for NPD014 protein (NPD014), the gene for
              GCIP-interacting protein p29 (P29), a novel gene and four
              CpG islands, complete sequence
          Length = 129747

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 316    gtggccggactcgccgcaggagaag 340
              |||||||| ||||||||||||||||
Sbjct: 108214 gtggccgggctcgccgcaggagaag 108190
to top
>emb|CR855375.8| Zebrafish DNA sequence from clone CH211-159E12 in linkage group 11,
              complete sequence
          Length = 178231

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 421    gcagtccctggagatgtggcc 441
              |||||||||||||||||||||
Sbjct: 149812 gcagtccctggagatgtggcc 149832
to top
>emb|AL953882.5| Human DNA sequence from clone RP4-706G24 on chromosome 1, complete
              sequence
          Length = 132066

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 316    gtggccggactcgccgcaggagaag 340
              |||||||| ||||||||||||||||
Sbjct: 103789 gtggccgggctcgccgcaggagaag 103765
to top
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
              complete sequence
          Length = 151399

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    tcgcatcgtcgattcttctt 146
              ||||||||||||||||||||
Sbjct: 116455 tcgcatcgtcgattcttctt 116436
to top
>emb|CT009481.4| Human DNA sequence from clone DAAP-143K21 on chromosome 6, complete
            sequence
          Length = 13073

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 228  ggtaggaaaaggaacgaaggggaa 251
            |||||||| |||||||||||||||
Sbjct: 5765 ggtaggaagaggaacgaaggggaa 5742
to top
>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic
              sequence
          Length = 346809

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 314026 ggtaggaagaggaacgaaggggaa 314049
to top
>gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B070201/HLA-Cw07020103
              genomic sequence
          Length = 341361

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 317114 ggtaggaagaggaacgaaggggaa 317137
to top
>gb|DQ249178.1| Homo sapiens isolate 388CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic
             sequence
          Length = 89624

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 228   ggtaggaaaaggaacgaaggggaa 251
             |||||||| |||||||||||||||
Sbjct: 55421 ggtaggaagaggaacgaaggggaa 55444
to top
>gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B15010101/HLA-Cw030401
              genomic sequence
          Length = 351341

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 329051 ggtaggaagaggaacgaaggggaa 329074
to top
>gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 338544

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 325121 ggtaggaagaggaacgaaggggaa 325144
to top
>gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 342745

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 305727 ggtaggaagaggaacgaaggggaa 305750
to top
>emb|BX247900.8| Human DNA sequence from clone DASS-357P10 on chromosome 6, complete
             sequence
          Length = 75621

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 228   ggtaggaaaaggaacgaaggggaa 251
             |||||||| |||||||||||||||
Sbjct: 29029 ggtaggaagaggaacgaaggggaa 29006
to top
>emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on chromosome 6 contains
            the gene for STG protein, the CDSN gene for
            corneodesmosin, the gene for SEEK1 protein, the gene for
            SPR1 protein, the gene for HCR, the TCF19 gene for
            transcription factor 19, the POU5F1 gene for POU domain,
            class 5, transcription factor 1, a putative novel
            transcript and four CpG islands, complete sequence
          Length = 204298

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 228  ggtaggaaaaggaacgaaggggaa 251
            |||||||| |||||||||||||||
Sbjct: 1397 ggtaggaagaggaacgaaggggaa 1374
to top
>emb|AL663093.10| Human DNA sequence from clone XXbac-31G15 on chromosome 6 contains a
              novel protein, a putative novel transcript and four CpG
              islands, complete sequence
          Length = 117327

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 106637 ggtaggaagaggaacgaaggggaa 106614
to top
>emb|AL669830.9| Human DNA sequence from clone XXbac-118E17 on chromosome 6 contains the
              GTF2H4 gene for general transcription factor IIH,
              polypeptide 4, 52kDa, the gene for KIAA1885 protein, the
              gene for a novel protein, three putative novel transcripts,
              the gene for DPCR1 protein and six CpG islands, complete
              sequence
          Length = 156272

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 155669 ggtaggaagaggaacgaaggggaa 155646
to top
>emb|AL669876.7| Human DNA sequence from clone RP11-190L2 on chromosome X, complete
             sequence
          Length = 90143

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ttgcataacttagttcattc 24
             ||||||||||||||||||||
Sbjct: 20850 ttgcataacttagttcattc 20831
to top
>emb|AL023694.1|HS511E16 Human DNA sequence from clone RP3-511E16 on chromosome 6p24.3-25.1
            Contains the 3' end of the EEF1E1 gene for eukaryotic
            translation elongation factor 1 epsilon 1, the 5' end of
            gene FLJ21789 for the ortholog of mouse muted and a CpG
            island, complete sequence
          Length = 56632

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 231  aggaaaaggaacgaaggggaacgg 254
            ||||||||||| ||||||||||||
Sbjct: 4616 aggaaaaggaaagaaggggaacgg 4593
to top
>emb|CR759772.4| Human DNA sequence from clone DAMC-192G6 on chromosome 6, complete
              sequence
          Length = 111150

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 105963 ggtaggaagaggaacgaaggggaa 105940
to top
>emb|CR847993.4| Human DNA sequence from clone DADB-349N3 on chromosome 6, complete
            sequence
          Length = 20924

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 228  ggtaggaaaaggaacgaaggggaa 251
            |||||||| |||||||||||||||
Sbjct: 2109 ggtaggaagaggaacgaaggggaa 2086
to top
>emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chromosome 6, complete
             sequence
          Length = 135396

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 228   ggtaggaaaaggaacgaaggggaa 251
             |||||||| |||||||||||||||
Sbjct: 53426 ggtaggaagaggaacgaaggggaa 53403
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 127     tcgcatcgtcgattcttctt 146
               ||||||||||||||||||||
Sbjct: 2023578 tcgcatcgtcgattcttctt 2023559
to top
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 880191 ggtaggaagaggaacgaaggggaa 880214
to top
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggtaggaaaaggaacgaaggggaa 251
              |||||||| |||||||||||||||
Sbjct: 451340 ggtaggaagaggaacgaaggggaa 451363
to top
>gb|M94390.1|LEIHEXBP Leishmania major HEXBP DNA binding protein (HEXBP) gene, complete
           cds
          Length = 1973

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 434 atgtggccctcctcgccgca 453
           ||||||||||||||||||||
Sbjct: 752 atgtggccctcctcgccgca 733
to top
>dbj|AB023048.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:53L9, complete sequence
          Length = 192650

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 228   ggtaggaaaaggaacgaaggggaa 251
             |||||||| |||||||||||||||
Sbjct: 47865 ggtaggaagaggaacgaaggggaa 47888


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,744,158
Number of Sequences: 3902068
Number of extensions: 2744158
Number of successful extensions: 41804
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41586
Number of HSP's gapped (non-prelim): 212
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top