ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC145367.2| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3dbj|AK105931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
4dbj|AK099588.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
6gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.024
7dbj|AK069996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
8gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Can... 46 0.094
9ref|NM_128733.3| Arabidopsis thaliana UDP-glycosyltransferase/ t... 44 0.37
10gb|AF515715.1| Humulus lupulus clone HlGA4 microsatellite sequence 44 0.37
11ref|XM_660382.1| Cryptosporidium hominis TU502 dentin phosphoryn... 44 0.37
12gb|BT000622.1| Arabidopsis thaliana putative glucosyltransferase... 44 0.37
13gb|AY125506.1| Arabidopsis thaliana At2g31750/F20M17.21 mRNA, co... 44 0.37
14gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 ma... 44 0.37
15gb|AF269402.1|AF269402 Staphylococcus epidermidis strain SR1 clo... 44 0.37
16gb|DQ158907.1| Arabidopsis thaliana jasmonic acid glucosyltransf... 44 0.37
17ref|XM_628280.1| Cryptosporidium parvum Iowa II splicing factor ... 44 0.37
18emb|BX819085.1|CNS0A8RS Arabidopsis thaliana Full-length cDNA Co... 44 0.37
19gb|AY084687.1| Arabidopsis thaliana clone 114997 mRNA, complete ... 44 0.37
20gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 44 0.37
21gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 44 0.37
22gb|AC153378.4| Mus musculus 6 BAC RP23-106C18 (Roswell Park Canc... 42 1.5
23gb|AY152826.1| Felis catus clone BAC 102h1 major histocompatibli... 42 1.5
24emb|CR381694.8| Zebrafish DNA sequence from clone CH211-55I2 in ... 42 1.5
25gb|AC078893.10| Oryza sativa chromosome 10 BAC OSJNBb0044B19 gen... 42 1.5
26gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 gen... 42 1.5
27gb|AC154261.2| Mus musculus BAC clone RP24-303N7 from chromosome... 42 1.5
28emb|CR378209.1| Pinus pinaster SSR, clone PPC3A04 42 1.5
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
30gb|AC158685.4| Mus musculus 6 BAC RP23-284D11 (Roswell Park Canc... 42 1.5
31emb|AL928827.10| Zebrafish DNA sequence from clone DKEY-284M18 i... 42 1.5
32gb|AC155287.6| Mus musculus 6 BAC RP23-103G18 (Roswell Park Canc... 42 1.5
33gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
34gb|AC153910.6| Mus musculus 6 BAC RP23-337M7 (Roswell Park Cance... 42 1.5
35emb|AJ403651.1|MMU403651 M.musculus DNA for GFAP-binding fragmen... 42 1.5
36ref|NM_111530.2| Arabidopsis thaliana RAB GDP-dissociation inhib... 40 5.8
37gb|AF409086.2| Arabidopsis thaliana Rab escort protein (REP) mRN... 40 5.8
38gb|AC138260.7| Mus musculus chromosome 6, clone RP23-247I19, com... 40 5.8
39gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome... 40 5.8
40emb|BX511141.27| Zebrafish DNA sequence from clone DKEYP-10C6 in... 40 5.8
41gb|AC131730.2| Mus musculus BAC clone RP23-115A5 from chromosome... 40 5.8
42gb|AC123801.4| Mus musculus BAC clone RP24-374A1 from chromosome... 40 5.8
43ref|XM_811624.1| Trypanosoma cruzi strain CL Brener kinesin (Tc0... 40 5.8
44gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, R... 40 5.8
45gb|L23649.2| Caenorhabditis elegans cosmid C02C2, complete sequence 40 5.8
46gb|BT000837.1| Arabidopsis thaliana Rab escort protein, putative... 40 5.8
47emb|AL672151.8| Zebrafish DNA sequence from clone BUSM1-179B20 i... 40 5.8
48emb|CR457444.6| Zebrafish DNA sequence from clone CH211-11C3 in ... 40 5.8
49emb|BX649372.5| Zebrafish DNA sequence from clone DKEY-52K20 in ... 40 5.8
50gb|AC011090.9| Homo sapiens chromosome 17, clone CTD-2005K23, co... 40 5.8
51emb|BX649311.10| Zebrafish DNA sequence from clone DKEY-63I8 in ... 40 5.8
52gb|AY094486.1| Arabidopsis thaliana AT3g06540/F5E6_13 mRNA, comp... 40 5.8
53gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.8
54gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromo... 40 5.8
55gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, comp... 40 5.8
56gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, comp... 40 5.8
57emb|AL954386.11| Zebrafish DNA sequence from clone CH211-242P18 ... 40 5.8
58gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, comple... 40 5.8
59gb|AC020580.11|AC020580 Arabidopsis thaliana chromosome 3 BAC F5... 40 5.8
60emb|AL929332.15| Mouse DNA sequence from clone RP23-476I19 on ch... 40 5.8
61dbj|AK116306.1| Ciona intestinalis cDNA, clone:citb031k22, full ... 40 5.8
62emb|AL953881.5| Zebrafish DNA sequence from clone CH211-208N2, c... 40 5.8
63emb|AL807833.5| Mouse DNA sequence from clone RP23-371E13 on chr... 40 5.8 
>gb|AC145367.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064J09 map near 50283S, complete sequence
          Length = 111122

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                         
Query: 340   tccacacatcacacacatacctggcagtgcccatttgatcgccgaacaatggtctgcata 399
             |||| ||| |||| |||||||| ||| | ||||| ||||| || ||  |||| || ||||
Sbjct: 83662 tccaaacagcacaaacatacctcgcatttcccatctgatctccaaaacatggcctacata 83721

                                         
Query: 400   tcatcggcacgccttccgatatgctctc 427
             |||||||||||||||| ||||| |||||
Sbjct: 83722 tcatcggcacgccttcagatatactctc 83749
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                            
Query: 340      tccacacatcacacacatacctggcagtgcccatttgatcgccgaacaatggtctgcata 399
                |||| ||| |||| |||||||| ||| | ||||| ||||| || ||  |||| || ||||
Sbjct: 14095254 tccaaacagcacaaacatacctcgcatttcccatctgatctccaaaacatggcctacata 14095313

                                            
Query: 400      tcatcggcacgccttccgatatgctctc 427
                |||||||||||||||| ||||| |||||
Sbjct: 14095314 tcatcggcacgccttcagatatactctc 14095341



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 318      acctccaccctaacccccaccttccacacatcacacacatacct 361
                ||||| |||||||| |||||||||||||  ||||| ||||||||
Sbjct: 13932121 acctcaaccctaacacccaccttccacatgtcacatacatacct 13932164
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>dbj|AK105931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B02, full
            insert sequence
          Length = 1509

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 340  tccacacatcacacacatacctggcagtgcccatttgatcgccgaacaatggtctgcata 399
            |||| ||| |||| |||||||| ||| | ||||| ||||| || ||  |||| || ||||
Sbjct: 1154 tccaaacagcacaaacatacctcgcatttcccatctgatctccaaaacatggcctacata 1095

                                        
Query: 400  tcatcggcacgccttccgatatgctctc 427
            |||||||||||||||| ||||| |||||
Sbjct: 1094 tcatcggcacgccttcagatatactctc 1067
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>dbj|AK099588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043F17, full
            insert sequence
          Length = 1534

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 340  tccacacatcacacacatacctggcagtgcccatttgatcgccgaacaatggtctgcata 399
            |||| ||| |||| |||||||| ||| | ||||| ||||| || ||  |||| || ||||
Sbjct: 1168 tccaaacagcacaaacatacctcgcatttcccatctgatctccaaaacatggcctacata 1109

                                        
Query: 400  tcatcggcacgccttccgatatgctctc 427
            |||||||||||||||| ||||| |||||
Sbjct: 1108 tcatcggcacgccttcagatatactctc 1081
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                            
Query: 340      tccacacatcacacacatacctggcagtgcccatttgatcgccgaacaatggtctgcata 399
                |||| ||| |||| |||||||| ||| | ||||| ||||| || ||  |||| || ||||
Sbjct: 14177256 tccaaacagcacaaacatacctcgcatttcccatctgatctccaaaacatggcctacata 14177315

                                            
Query: 400      tcatcggcacgccttccgatatgctctc 427
                |||||||||||||||| ||||| |||||
Sbjct: 14177316 tcatcggcacgccttcagatatactctc 14177343



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 318      acctccaccctaacccccaccttccacacatcacacacatacct 361
                ||||| |||||||| |||||||||||||  ||||| ||||||||
Sbjct: 14014123 acctcaaccctaacacccaccttccacatgtcacatacatacct 14014166
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>gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0045D11 map near 50283S, complete sequence
          Length = 148306

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 318   acctccaccctaacccccaccttccacacatcacacacatacct 361
             ||||| |||||||| |||||||||||||  ||||| ||||||||
Sbjct: 64958 acctcaaccctaacacccaccttccacatgtcacatacatacct 65001
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>dbj|AK069996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040B08, full
            insert sequence
          Length = 1502

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 318  acctccaccctaacccccaccttccacacatcacacacatacct 361
            ||||| |||||||| |||||||||||||  ||||| ||||||||
Sbjct: 1236 acctcaaccctaacacccaccttccacatgtcacatacatacct 1193
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>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 216792

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 17     aatatatttaatgtcaatatttt 39
              |||||||||||||||||||||||
Sbjct: 136949 aatatatttaatgtcaatatttt 136927
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>ref|NM_128733.3| Arabidopsis thaliana UDP-glycosyltransferase/ transferase,
            transferring glycosyl groups / transferase, transferring
            hexosyl groups AT2G31750 mRNA, complete cds
          Length = 2266

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 324  accctaacccccaccttccacacatc 349
            ||||||||||| ||||||||||||||
Sbjct: 1251 accctaaccccaaccttccacacatc 1226
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>gb|AF515715.1| Humulus lupulus clone HlGA4 microsatellite sequence
          Length = 299

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 227 tctcattctttctttgacctct 248
           ||||||||||||||||||||||
Sbjct: 89  tctcattctttctttgacctct 110
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>ref|XM_660382.1| Cryptosporidium hominis TU502 dentin phosphoryn (Chro.70117)
           partial mRNA
          Length = 861

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 295 tccctctcttcaactggttctc 316
           ||||||||||||||||||||||
Sbjct: 221 tccctctcttcaactggttctc 200
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>gb|BT000622.1| Arabidopsis thaliana putative glucosyltransferase
            (At2g31750/F20M17.21) mRNA, complete cds
          Length = 1371

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 324  accctaacccccaccttccacacatc 349
            ||||||||||| ||||||||||||||
Sbjct: 1172 accctaaccccaaccttccacacatc 1147
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>gb|AY125506.1| Arabidopsis thaliana At2g31750/F20M17.21 mRNA, complete cds
          Length = 1559

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 324  accctaacccccaccttccacacatc 349
            ||||||||||| ||||||||||||||
Sbjct: 1207 accctaaccccaaccttccacacatc 1182
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>gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 map nga361, complete
             sequence
          Length = 100665

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 324   accctaacccccaccttccacacatc 349
             ||||||||||| ||||||||||||||
Sbjct: 86767 accctaaccccaaccttccacacatc 86792
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>gb|AF269402.1|AF269402 Staphylococcus epidermidis strain SR1 clone step.1003c08 genomic
           sequence
          Length = 2851

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 21  tatttaatgtcaatattttatt 42
           ||||||||||||||||||||||
Sbjct: 370 tatttaatgtcaatattttatt 349
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>gb|DQ158907.1| Arabidopsis thaliana jasmonic acid glucosyltransferase (JGT1) mRNA,
            complete cds
          Length = 1371

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 324  accctaacccccaccttccacacatc 349
            ||||||||||| ||||||||||||||
Sbjct: 1172 accctaaccccaaccttccacacatc 1147
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>ref|XM_628280.1| Cryptosporidium parvum Iowa II splicing factor RRM domain
           containing protein; T22E16.120 SC35-like splicing factor
           (cgd7_940), partial mRNA
          Length = 861

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 295 tccctctcttcaactggttctc 316
           ||||||||||||||||||||||
Sbjct: 221 tccctctcttcaactggttctc 200
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>emb|BX819085.1|CNS0A8RS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB44ZF02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1384

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 324  accctaacccccaccttccacacatc 349
            ||||||||||| ||||||||||||||
Sbjct: 1173 accctaaccccaaccttccacacatc 1148
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>gb|AY084687.1| Arabidopsis thaliana clone 114997 mRNA, complete sequence
          Length = 1507

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 324  accctaacccccaccttccacacatc 349
            ||||||||||| ||||||||||||||
Sbjct: 1251 accctaaccccaaccttccacacatc 1226
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 21      tatttaatgtcaatattttatt 42
               ||||||||||||||||||||||
Sbjct: 1493618 tatttaatgtcaatattttatt 1493597
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 21      tatttaatgtcaatattttatt 42
               ||||||||||||||||||||||
Sbjct: 1630903 tatttaatgtcaatattttatt 1630882
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>gb|AC153378.4| Mus musculus 6 BAC RP23-106C18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 199980

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 246    tcttcaccttcctttccatcc 266
              |||||||||||||||||||||
Sbjct: 169547 tcttcaccttcctttccatcc 169567
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>gb|AY152826.1| Felis catus clone BAC 102h1 major histocompatiblity complex extended
             and classical class II region, partial sequence
          Length = 132445

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 312   ttctccacctccaccctaaccccca 336
             ||||||||||||||||| |||||||
Sbjct: 83175 ttctccacctccaccctcaccccca 83151
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>emb|CR381694.8| Zebrafish DNA sequence from clone CH211-55I2 in linkage group 10,
              complete sequence
          Length = 178736

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 66     tttaatgatcaatattttaat 86
              |||||||||||||||||||||
Sbjct: 160961 tttaatgatcaatattttaat 160981
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>gb|AC078893.10| Oryza sativa chromosome 10 BAC OSJNBb0044B19 genomic sequence, complete
             sequence
          Length = 81784

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    atcaatattttaattagaaac 93
             |||||||||||||||||||||
Sbjct: 75300 atcaatattttaattagaaac 75320
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>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete
             sequence
          Length = 144724

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    atcaatattttaattagaaac 93
             |||||||||||||||||||||
Sbjct: 20036 atcaatattttaattagaaac 20056
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>gb|AC154261.2| Mus musculus BAC clone RP24-303N7 from chromosome 9, complete sequence
          Length = 172079

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 312    ttctccacctccaccctaaccccca 336
              |||||||||||||||| ||||||||
Sbjct: 109741 ttctccacctccaccccaaccccca 109717
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>emb|CR378209.1| Pinus pinaster SSR, clone PPC3A04
          Length = 552

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 239 tttgacctcttcaccttcctt 259
           |||||||||||||||||||||
Sbjct: 419 tttgacctcttcaccttcctt 439
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 73       atcaatattttaattagaaac 93
                |||||||||||||||||||||
Sbjct: 17172300 atcaatattttaattagaaac 17172280
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>gb|AC158685.4| Mus musculus 6 BAC RP23-284D11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 191856

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 246   tcttcaccttcctttccatcc 266
             |||||||||||||||||||||
Sbjct: 37827 tcttcaccttcctttccatcc 37847
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>emb|AL928827.10| Zebrafish DNA sequence from clone DKEY-284M18 in linkage group 20,
              complete sequence
          Length = 192407

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 213    acatgcctcagatctctcatt 233
              |||||||||||||||||||||
Sbjct: 161281 acatgcctcagatctctcatt 161261
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>gb|AC155287.6| Mus musculus 6 BAC RP23-103G18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221335

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 342    cacacatcacacacatacctg 362
              |||||||||||||||||||||
Sbjct: 181930 cacacatcacacacatacctg 181950
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 73       atcaatattttaattagaaac 93
                |||||||||||||||||||||
Sbjct: 17181340 atcaatattttaattagaaac 17181320
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>gb|AC153910.6| Mus musculus 6 BAC RP23-337M7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 214838

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 342   cacacatcacacacatacctg 362
             |||||||||||||||||||||
Sbjct: 24000 cacacatcacacacatacctg 24020
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>emb|AJ403651.1|MMU403651 M.musculus DNA for GFAP-binding fragment GFAPE9
          Length = 166

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 342 cacacatcacacacatacctg 362
           |||||||||||||||||||||
Sbjct: 132 cacacatcacacacatacctg 112
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>ref|NM_111530.2| Arabidopsis thaliana RAB GDP-dissociation inhibitor/ RAB escort
           protein AT3G06540 mRNA, complete cds
          Length = 2015

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 311 gttctccacctccaccctaacccc 334
           |||||||||||| |||||||||||
Sbjct: 244 gttctccacctcgaccctaacccc 267
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>gb|AF409086.2| Arabidopsis thaliana Rab escort protein (REP) mRNA, complete cds
          Length = 1832

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 311 gttctccacctccaccctaacccc 334
           |||||||||||| |||||||||||
Sbjct: 224 gttctccacctcgaccctaacccc 247
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>gb|AC138260.7| Mus musculus chromosome 6, clone RP23-247I19, complete sequence
          Length = 197686

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    tcagatctctcattctttct 239
              ||||||||||||||||||||
Sbjct: 175301 tcagatctctcattctttct 175282
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>gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome 6, complete sequence
          Length = 238262

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    tcagatctctcattctttct 239
              ||||||||||||||||||||
Sbjct: 131981 tcagatctctcattctttct 131962
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>emb|BX511141.27| Zebrafish DNA sequence from clone DKEYP-10C6 in linkage group 23,
            complete sequence
          Length = 165253

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   tttaatgtcaatattttatt 42
            ||||||||||||||||||||
Sbjct: 7626 tttaatgtcaatattttatt 7607
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>gb|AC131730.2| Mus musculus BAC clone RP23-115A5 from chromosome 5, complete sequence
          Length = 218708

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   ccacacatcacacacatacc 360
             ||||||||||||||||||||
Sbjct: 40196 ccacacatcacacacatacc 40215
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>gb|AC123801.4| Mus musculus BAC clone RP24-374A1 from chromosome 15, complete sequence
          Length = 150979

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   ataaatagacagttcatagc 121
             ||||||||||||||||||||
Sbjct: 23777 ataaatagacagttcatagc 23796
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>ref|XM_811624.1| Trypanosoma cruzi strain CL Brener kinesin (Tc00.1047053509167.180)
            partial mRNA
          Length = 3354

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ggttctccacctccacccta 329
            ||||||||||||||||||||
Sbjct: 1387 ggttctccacctccacccta 1368
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>gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-137N6, complete
              sequence
          Length = 231589

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     atatttaatgtcaatatttt 39
              ||||||||||||||||||||
Sbjct: 109324 atatttaatgtcaatatttt 109305
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>gb|L23649.2| Caenorhabditis elegans cosmid C02C2, complete sequence
          Length = 20496

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    tattttaattagaaactcgtacga 101
             |||||| |||||||||||||||||
Sbjct: 14936 tatttttattagaaactcgtacga 14913
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>gb|BT000837.1| Arabidopsis thaliana Rab escort protein, putative
           (At3g06540/F5E6_13) mRNA, complete cds
          Length = 1692

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 311 gttctccacctccaccctaacccc 334
           |||||||||||| |||||||||||
Sbjct: 118 gttctccacctcgaccctaacccc 141
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>emb|AL672151.8| Zebrafish DNA sequence from clone BUSM1-179B20 in linkage group 19
             Contains the abcb3 gene for ATP-binding cassette,
             sub-family B (MDR/TAP), member 3, the 5' part of the
             abcb3l2 (abcb3 like 2) gene, the mhc1ufa gene (major
             histocompatibility complex class I UFA), a putative novel
             gene, the mhc1uda gene (major histocompatibility complex
             class I UDA), a reverse transcriptase pseudogene, the tpsn
             gene for tapasin, the 5' end of a novel gene similar to
             daxx and a CpG island, complete sequence
          Length = 102077

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    tttaatgatcaatattttaa 85
             ||||||||||||||||||||
Sbjct: 60216 tttaatgatcaatattttaa 60197
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>emb|CR457444.6| Zebrafish DNA sequence from clone CH211-11C3 in linkage group 11,
              complete sequence
          Length = 170537

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     atatttaatgtcaatatttt 39
              ||||||||||||||||||||
Sbjct: 152670 atatttaatgtcaatatttt 152689
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>emb|BX649372.5| Zebrafish DNA sequence from clone DKEY-52K20 in linkage group 2, complete
              sequence
          Length = 249584

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     ttaatgtcaatattttattt 43
              ||||||||||||||||||||
Sbjct: 161112 ttaatgtcaatattttattt 161093
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>gb|AC011090.9| Homo sapiens chromosome 17, clone CTD-2005K23, complete sequence
          Length = 94042

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 317   cacctccaccctaacccccaccttccac 344
             |||||||||||  |||||||||||||||
Sbjct: 54369 cacctccacccccacccccaccttccac 54396
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>emb|BX649311.10| Zebrafish DNA sequence from clone DKEY-63I8 in linkage group 2, complete
              sequence
          Length = 228024

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     ttaatgtcaatattttattt 43
              ||||||||||||||||||||
Sbjct: 222686 ttaatgtcaatattttattt 222667
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>gb|AY094486.1| Arabidopsis thaliana AT3g06540/F5E6_13 mRNA, complete cds
          Length = 2016

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 311 gttctccacctccaccctaacccc 334
           |||||||||||| |||||||||||
Sbjct: 244 gttctccacctcgaccctaacccc 267
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     tccatcagtcttgtgatggc 283
               ||||||||||||||||||||
Sbjct: 1278557 tccatcagtcttgtgatggc 1278538
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>gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromosome unknown, complete
             sequence
          Length = 240827

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   tctccacctccaccctaaccccca 336
             ||||||||||||||| ||||||||
Sbjct: 83633 tctccacctccaccccaaccccca 83610
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>gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, complete sequence
          Length = 183378

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   tctccacctccaccctaaccccca 336
             ||||||||||||||| ||||||||
Sbjct: 67928 tctccacctccaccccaaccccca 67951
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>gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, complete sequence
          Length = 178405

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 313    tctccacctccaccctaaccccca 336
              ||||||||||||||| ||||||||
Sbjct: 131139 tctccacctccaccccaaccccca 131162
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>emb|AL954386.11| Zebrafish DNA sequence from clone CH211-242P18 in linkage group 1,
              complete sequence
          Length = 160259

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 207    agcaccacatgcctcagatctctc 230
              ||||||||||||||||||| ||||
Sbjct: 128518 agcaccacatgcctcagatgtctc 128541
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>gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, complete sequence
          Length = 201567

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aatgatcaatattttaatta 88
             ||||||||||||||||||||
Sbjct: 66227 aatgatcaatattttaatta 66208
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>gb|AC020580.11|AC020580 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete
             sequence
          Length = 94704

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 311   gttctccacctccaccctaacccc 334
             |||||||||||| |||||||||||
Sbjct: 48822 gttctccacctcgaccctaacccc 48845
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>emb|AL929332.15| Mouse DNA sequence from clone RP23-476I19 on chromosome 2, complete
             sequence
          Length = 112785

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   cctcttcaccttcctttcca 263
             ||||||||||||||||||||
Sbjct: 68723 cctcttcaccttcctttcca 68742
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>dbj|AK116306.1| Ciona intestinalis cDNA, clone:citb031k22, full insert sequence
          Length = 1555

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 87   tagaaactcgtacgaataaa 106
            ||||||||||||||||||||
Sbjct: 1168 tagaaactcgtacgaataaa 1149
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>emb|AL953881.5| Zebrafish DNA sequence from clone CH211-208N2, complete sequence
          Length = 201659

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 207    agcaccacatgcctcagatctctc 230
              ||||||||||||||||||| ||||
Sbjct: 115301 agcaccacatgcctcagatgtctc 115324
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>emb|AL807833.5| Mouse DNA sequence from clone RP23-371E13 on chromosome 4, complete
              sequence
          Length = 188795

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    tctccacctccaccctaacc 332
              ||||||||||||||||||||
Sbjct: 134007 tctccacctccaccctaacc 134026


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,317,393
Number of Sequences: 3902068
Number of extensions: 5317393
Number of successful extensions: 116082
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115754
Number of HSP's gapped (non-prelim): 328
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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