ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X60343.1|HVGADPH H.vulgare GADPH mRNA for glycolytic glycera... 398 e-108
2gb|AY290728.1| Triticum aestivum glyceraldehyde 3-phosphate dehy... 96 6e-17
3ref|XM_479895.1| Oryza sativa (japonica cultivar-group), mRNA 64 2e-07
4ref|XM_507107.1| PREDICTED Oryza sativa (japonica cultivar-group... 64 2e-07
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
6dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
7dbj|AK105038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
8dbj|AK103777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
9dbj|AK100159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
10dbj|AK071097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
11gb|U31676.1|OSU31676 Oryza sativa clone glyceraldehyde-3-phospha... 64 2e-07
12emb|X15596.1|ZMGPC1 Maize Gpc1 gene for glyceraldehyde-3-phospha... 56 5e-05
13gb|BT016387.1| Zea mays clone Contig220 mRNA sequence 52 8e-04
14emb|X73151.1|ZMGAPC2 Z.mays GapC2 gene 52 8e-04
15gb|L13432.1|MZEGAPDB Zea mays GAPC2 glyceraldehyde-3-phosphate d... 52 8e-04
16gb|U45858.1|ZMU45858 Zea mays glyceraldehyde-3-phosphate dehydro... 52 8e-04
17gb|U45855.1|ZMU45855 Zea mays glyceraldehyde-3-phosphate dehydro... 52 8e-04
18gb|BT016419.1| Zea mays clone Contig252 mRNA sequence 48 0.012
19gb|AY109359.1| Zea mays CL2022_2 mRNA sequence 48 0.012
20gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 0.77
21gb|AF130342.2| Homo sapiens chromosome 8, complete sequence 40 3.0
22gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 40 3.0
23emb|X07156.1|ZMCGAPDH Maize mRNA for cytosolic GAPDH (GapC) glyc... 40 3.0
24gb|AC036114.7| Homo sapiens chromosome 11, clone RP11-283H3, com... 40 3.0 
>emb|X60343.1|HVGADPH H.vulgare GADPH mRNA for glycolytic glyceraldehyde-3-phosphate
            dehydrogenase
          Length = 1365

 Score =  398 bits (201), Expect = e-108
 Identities = 225/233 (96%)
 Strand = Plus / Minus

                                                                        
Query: 4    caggcaaacaaaagttgtaaatggactgaacgatttacataaatcaagagtacttgacta 63
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 caggcaaacagaagttgtaaatggactgaacgatttacataaatcaagagtacttgacta 1194

                                                                        
Query: 64   gcacctcggggcggaaaaacaaatggtaactcatgtccaactaacatgaaccaggcgtct 123
            ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 gcaactcggtgcggaaaaacagatggtaactcatgtccaactaacatgaaccaggcgtct 1134

                                                                        
Query: 124  agcgaccccatccacatttattcccataaacaaaggggcacctctgaccaggcgccacaa 183
            |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1133 agcgacaccatccacatttattcccatagacaaaggggcacctctgaccaggcgccacaa 1074

                                                                 
Query: 184  ggaaagcaaaacgctctactgggtcttggccatggggcggatcaggtcgacaa 236
            |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1073 ggaaagcagaacgctctactgggtcttggccatgtggcggatcaggtcgacaa 1021
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>gb|AY290728.1| Triticum aestivum glyceraldehyde 3-phosphate dehydrogenase-like
           mRNA, partial sequence
          Length = 496

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 138/167 (82%), Gaps = 17/167 (10%)
 Strand = Plus / Minus

                                                                       
Query: 79  aaaacaaatggtaactcatgtccaactaacatgaaccaggcgtc---tagcgaccccatc 135
           |||||| | |||||||||||||||||||||||||||||||||||   | ||||| |||||
Sbjct: 406 aaaacagaaggtaactcatgtccaactaacatgaaccaggcgtcgtctggcgacaccatc 347

                                                                       
Query: 136 cacattta---ttcccataaacaaag---gggcacctctgaccaggcgccacaaggaaag 189
           ||||||||   ||| |||| ||||||   || ||||||||||||        ||||||| 
Sbjct: 346 cacatttattcttcgcatagacaaagcagggacacctctgacca--------aaggaaat 295

                                                          
Query: 190 caaaacgctctactgggtcttggccatggggcggatcaggtcgacaa 236
           || |||||||||||| |||||||||||| |||||||||| |||||||
Sbjct: 294 cagaacgctctactgagtcttggccatgtggcggatcagatcgacaa 248
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>ref|XM_479895.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1356

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatggggcggatcaggtcga 233
            |||||||||||||||||||| |||||||||||||||
Sbjct: 1059 tctactgggtcttggccatgtggcggatcaggtcga 1024
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>ref|XM_507107.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1163_G08.15 mRNA
          Length = 1518

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatggggcggatcaggtcga 233
            |||||||||||||||||||| |||||||||||||||
Sbjct: 1092 tctactgggtcttggccatgtggcggatcaggtcga 1057
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                   
Query: 198     tctactgggtcttggccatggggcggatcaggtcga 233
               |||||||||||||||||||| |||||||||||||||
Sbjct: 1522421 tctactgggtcttggccatgtggcggatcaggtcga 1522386
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>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1163_G08
          Length = 150676

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                 
Query: 198   tctactgggtcttggccatggggcggatcaggtcga 233
             |||||||||||||||||||| |||||||||||||||
Sbjct: 49909 tctactgggtcttggccatgtggcggatcaggtcga 49874
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>dbj|AK105038.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C12, full
           insert sequence
          Length = 455

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 198 tctactgggtcttggccatggggcggatcaggtcga 233
           |||||||||||||||||||| |||||||||||||||
Sbjct: 236 tctactgggtcttggccatgtggcggatcaggtcga 201
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>dbj|AK103777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033144F10, full
            insert sequence
          Length = 1356

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatggggcggatcaggtcga 233
            |||||||||||||||||||| |||||||||||||||
Sbjct: 1059 tctactgggtcttggccatgtggcggatcaggtcga 1024
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>dbj|AK100159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020L08, full
            insert sequence
          Length = 1783

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatggggcggatcaggtcga 233
            |||||||||||||||||||| |||||||||||||||
Sbjct: 1530 tctactgggtcttggccatgtggcggatcaggtcga 1495
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>dbj|AK071097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080G06, full
            insert sequence
          Length = 1518

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatggggcggatcaggtcga 233
            |||||||||||||||||||| |||||||||||||||
Sbjct: 1092 tctactgggtcttggccatgtggcggatcaggtcga 1057
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>gb|U31676.1|OSU31676 Oryza sativa clone glyceraldehyde-3-phosphate dehydrogenase (Gpc)
            mRNA, complete cds
          Length = 1326

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatggggcggatcaggtcga 233
            |||||||||||||||||||| |||||||||||||||
Sbjct: 1043 tctactgggtcttggccatgtggcggatcaggtcga 1008
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>emb|X15596.1|ZMGPC1 Maize Gpc1 gene for glyceraldehyde-3-phosphate dehydrogenase (GADPH)
            subunit C
          Length = 5955

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 191  aaaacgctctactgggtcttggccatggggcggatcaggtcgac 234
            ||||| |||||||||||||||  |||| ||||||||||||||||
Sbjct: 5500 aaaaccctctactgggtcttgaacatgtggcggatcaggtcgac 5457
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>gb|BT016387.1| Zea mays clone Contig220 mRNA sequence
          Length = 1571

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatggggcggatcaggtcgac 234
            |||||||||||||||  |||| ||||||||||||||||
Sbjct: 1242 ctctactgggtcttgaacatgtggcggatcaggtcgac 1205
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>emb|X73151.1|ZMGAPC2 Z.mays GapC2 gene
          Length = 6166

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatggggcggatcaggtcgac 234
            |||||||||||||||  |||| ||||||||||||||||
Sbjct: 5814 ctctactgggtcttgaacatgtggcggatcaggtcgac 5777
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>gb|L13432.1|MZEGAPDB Zea mays GAPC2 glyceraldehyde-3-phosphate dehydrogenase mRNA,
           partial cds
          Length = 971

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 197 ctctactgggtcttggccatggggcggatcaggtcgac 234
           |||||||||||||||  |||| ||||||||||||||||
Sbjct: 747 ctctactgggtcttgaacatgtggcggatcaggtcgac 710
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>gb|U45858.1|ZMU45858 Zea mays glyceraldehyde-3-phosphate dehydrogenase (gpc2) gene,
            complete cds
          Length = 4590

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatggggcggatcaggtcgac 234
            |||||||||||||||  |||| ||||||||||||||||
Sbjct: 4473 ctctactgggtcttgaacatgtggcggatcaggtcgac 4436
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>gb|U45855.1|ZMU45855 Zea mays glyceraldehyde-3-phosphate dehydrogenase GAPC2 (gpc2) mRNA,
            complete cds
          Length = 1307

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatggggcggatcaggtcgac 234
            |||||||||||||||  |||| ||||||||||||||||
Sbjct: 1082 ctctactgggtcttgaacatgtggcggatcaggtcgac 1045
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>gb|BT016419.1| Zea mays clone Contig252 mRNA sequence
          Length = 1442

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 199  ctactgggtcttggccatggggcggatcaggtcgac 234
            |||||||||||||  |||| ||||||||||||||||
Sbjct: 1080 ctactgggtcttgaacatgtggcggatcaggtcgac 1045
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>gb|AY109359.1| Zea mays CL2022_2 mRNA sequence
          Length = 3495

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 199  ctactgggtcttggccatggggcggatcaggtcgac 234
            |||||||||||||  |||| ||||||||||||||||
Sbjct: 3120 ctactgggtcttgaacatgtggcggatcaggtcgac 3085
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 211     ggccatggggcggatcaggtc 231
               |||||||||||||||||||||
Sbjct: 2751212 ggccatggggcggatcaggtc 2751232
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>gb|AF130342.2| Homo sapiens chromosome 8, complete sequence
          Length = 349992

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tccacatttattcccataaa 153
              ||||||||||||||||||||
Sbjct: 215873 tccacatttattcccataaa 215854
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>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128301

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    aactcatgtccaactaacatgaac 114
             |||||||||||||| |||||||||
Sbjct: 82729 aactcatgtccaacaaacatgaac 82752
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>emb|X07156.1|ZMCGAPDH Maize mRNA for cytosolic GAPDH (GapC) glyceraldehyde-3-phosphate
            dehydrogenase
          Length = 1305

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 199  ctactgggtcttggccatggggcggatcaggtcgac 234
            |||||||| ||||  |||| ||||||||||||||||
Sbjct: 1088 ctactgggacttgaacatgtggcggatcaggtcgac 1053
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>gb|AC036114.7| Homo sapiens chromosome 11, clone RP11-283H3, complete sequence
          Length = 159851

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 129    ccccatccacatttattcccataaacaa 156
              ||||||||| ||| ||||||||||||||
Sbjct: 132154 ccccatccagattcattcccataaacaa 132181


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,010,044
Number of Sequences: 3902068
Number of extensions: 2010044
Number of successful extensions: 35809
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35761
Number of HSP's gapped (non-prelim): 47
length of query: 236
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 214
effective length of database: 17,147,199,772
effective search space: 3669500751208
effective search space used: 3669500751208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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