ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 31 1.4
2EMBA_MYCSM (Q50394) Probable arabinosyltransferase A (EC 2.4.2.-) 28 8.8

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 375 PCRDRKAYVFWDAYHTSDAANRVIADRLWAGMT 277
           PC +    V WD  H + AAN+ I D++  G++
Sbjct: 334 PCDEPDKAVVWDGVHFTQAANKFIFDKIAPGLS 366



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>EMBA_MYCSM (Q50394) Probable arabinosyltransferase A (EC 2.4.2.-)|
          Length = 1092

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 391 PAGLDAL-PRPQGVRVLGRVPHLRRRQPGHRRP 296
           P GL AL P   G R +GRV   RR  PG  RP
Sbjct: 422 PQGLIALAPLLVGARAIGRVVTARRAAPGSWRP 454


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,757,378
Number of Sequences: 219361
Number of extensions: 719408
Number of successful extensions: 1857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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