ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart08g04 |
|---|---|
| Clone Library Name | barley_pub |
>UCHL5_HUMAN (Q9Y5K5) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 329 Score = 82.0 bits (201), Expect = 9e-16 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Frame = -3 Query: 512 EIRFNLMAIIKNRKDVYTAELKELEKK---REQILQELSNEATAAAEKESLNXXXXXXXX 342 EIRFNLMAI+ +RK +Y ++ EL+++ E + + N +A + E Sbjct: 215 EIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSE----------- 263 Query: 341 XXXXXXEKIVMEEE--KFRKWKTENVRRKHNYIPFLFNLLKALAEKKQLTPLVGKARQQK 168 ++++EEE K +++K EN+RRKHNY+PF+ LLK LAE +QL PLV KA++++ Sbjct: 264 ---VAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 320
>UCHL5_MOUSE (Q9WUP7) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 329 Score = 80.9 bits (198), Expect = 2e-15 Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Frame = -3 Query: 512 EIRFNLMAIIKNRKDVYTAELKELEKKREQILQELSNEATAAAEKESLNXXXXXXXXXXX 333 EIRFNLMAI+ +RK +Y ++ EL++ +L+ E ++ S Sbjct: 215 EIRFNLMAIVSDRKMIYEQKIAELQR-------QLAEEEPMDTDQGS----TVLSAIQSE 263 Query: 332 XXXEKIVMEEE--KFRKWKTENVRRKHNYIPFLFNLLKALAEKKQLTPLVGKARQQK 168 ++++EEE K +++K EN+RRKHNY+PF+ LLK LAE +QL PLV KA++++ Sbjct: 264 VARNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 320
>UCHL5_BOVIN (Q9XSJ0) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 328 Score = 80.5 bits (197), Expect = 3e-15 Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 4/119 (3%) Frame = -3 Query: 512 EIRFNLMAIIKNRKDVYTAELKELEKK--REQILQELSNEATAAAEKESLNXXXXXXXXX 339 EIRFNLMAI+ +RK +Y ++ EL+++ E + + + +A + E Sbjct: 215 EIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSNMLSAIQSE------------ 262 Query: 338 XXXXXEKIVMEEE--KFRKWKTENVRRKHNYIPFLFNLLKALAEKKQLTPLVGKARQQK 168 ++++EEE K +++K EN+RRKHNY+PF+ LLK LAE +QL PLV KA++++ Sbjct: 263 --VAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 319
>UBH4_CAEEL (Q09444) Probable ubiquitin carboxyl-terminal hydrolase ubh-4 (EC| 3.4.19.12) (Ubiquitin C-terminal hydrolase family 1 member 4) (Ubiquitin thioesterase 4) Length = 321 Score = 54.3 bits (129), Expect = 2e-07 Identities = 38/113 (33%), Positives = 50/113 (44%) Frame = -3 Query: 512 EIRFNLMAIIKNRKDVYTAELKELEKKREQILQELSNEATAAAEKESLNXXXXXXXXXXX 333 EI FNLMA++ NRK Q LQE+ A E L Sbjct: 210 EITFNLMALVPNRK---------------QKLQEMMENLIQANENNELEEQIADLNKA-- 252 Query: 332 XXXEKIVMEEEKFRKWKTENVRRKHNYIPFLFNLLKALAEKKQLTPLVGKARQ 174 I E+ K ++ EN RR+HNY PF+ L+K LA++ +L LV A Q Sbjct: 253 -----IADEDYKMEMYRKENNRRRHNYTPFVIELMKILAKEGKLVGLVDNAYQ 300
>UBLH2_SCHPO (Q9UUB6) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| Length = 300 Score = 39.3 bits (90), Expect = 0.006 Identities = 31/103 (30%), Positives = 46/103 (44%) Frame = -3 Query: 515 SEIRFNLMAIIKNRKDVYTAELKELEKKREQILQELSNEATAAAEKESLNXXXXXXXXXX 336 +EIRFNLM I K++K A L E +L++E AA+ Sbjct: 209 AEIRFNLMVICKDKK----ASLLTRE--------DLTDEEKAAS---------------- 240 Query: 335 XXXXEKIVMEEEKFRKWKTENVRRKHNYIPFLFNLLKALAEKK 207 I +E+EK +WK EN R+HN++ L K L + + Sbjct: 241 ------IAVEDEKRLRWKRENQLRRHNFVGLFVELSKLLVKDR 277
>BAP1_HUMAN (Q92560) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)| (BRCA1-associated protein 1) (Cerebral protein 6) Length = 729 Score = 33.9 bits (76), Expect = 0.27 Identities = 15/35 (42%), Positives = 24/35 (68%) Frame = -3 Query: 512 EIRFNLMAIIKNRKDVYTAELKELEKKREQILQEL 408 +IRFNLMA++ +R+ Y A L L+ R+ +L+ L Sbjct: 225 DIRFNLMAVVPDRRIKYEARLHVLKVNRQTVLEAL 259
>BAP1_MOUSE (Q99PU7) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)| (BRCA1-associated protein 1) (Ubiquitin C-terminal hydrolase X4) (UCH-X4) Length = 728 Score = 32.3 bits (72), Expect = 0.79 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = -3 Query: 512 EIRFNLMAIIKNRKDVYTAELKELEKKREQILQEL 408 +IRFNLMA++ +R+ Y L L+ R+ +L+ L Sbjct: 225 DIRFNLMAVVPDRRIKYETRLHVLKVNRQTVLEAL 259
>MTMR2_HUMAN (Q13614) Myotubularin-related protein 2 (EC 3.1.3.-)| Length = 643 Score = 32.0 bits (71), Expect = 1.0 Identities = 15/38 (39%), Positives = 26/38 (68%) Frame = -3 Query: 485 IKNRKDVYTAELKELEKKREQILQELSNEATAAAEKES 372 I NR A+ EL+KK E++ +E+SN +T+++E+ S Sbjct: 593 IHNRYKELLAKRAELQKKVEELQREISNRSTSSSERAS 630
>STK31_HUMAN (Q9BXU1) Serine/threonine-protein kinase 31 (EC 2.7.11.1)| (Serine/threonine-protein kinase NYD-SPK) Length = 1019 Score = 30.8 bits (68), Expect = 2.3 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = -3 Query: 485 IKNRKDVYTAELKELEKKREQILQELSNEATAAAE 381 +K KD K LE K EQI QEL E AA + Sbjct: 313 LKTEKDALLESYKALELKVEQIAQELQQEKAAAVD 347
>IF2_IDILO (Q5QTY8) Translation initiation factor IF-2| Length = 896 Score = 30.0 bits (66), Expect = 3.9 Identities = 26/75 (34%), Positives = 35/75 (46%) Frame = -3 Query: 485 IKNRKDVYTAELKELEKKREQILQELSNEATAAAEKESLNXXXXXXXXXXXXXXEKIVME 306 + K+ A+L+E EK+RE+ Q EA A AE+E EK E Sbjct: 112 LAQEKEAEEAKLREEEKQREEEQQRKEAEAKAKAEREK---------------AEKEKAE 156 Query: 305 EEKFRKWKTENVRRK 261 +EK RK K E R+K Sbjct: 157 KEKLRKEK-EKERQK 170
>KCNN4_MOUSE (O89109) Intermediate conductance calcium-activated potassium| channel protein 4 (SK4) (KCa4) (IK1) Length = 425 Score = 30.0 bits (66), Expect = 3.9 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -2 Query: 255 LHPVPVQPPQGAGREEAADAACWEGPAAEG 166 +HPVP++ P A EA DA W G EG Sbjct: 117 VHPVPLRSPHCALAGEATDAQPWPGFLGEG 146
>PLCB1_MOUSE (Q9Z1B3) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154) Length = 1216 Score = 30.0 bits (66), Expect = 3.9 Identities = 20/79 (25%), Positives = 35/79 (44%) Frame = -3 Query: 485 IKNRKDVYTAELKELEKKREQILQELSNEATAAAEKESLNXXXXXXXXXXXXXXEKIVME 306 +K K++ E KEL+KK ++ QE EAT + +K + + + Sbjct: 1054 LKKLKEICEKEKKELKKKMDKKRQEKITEAT-SKDKSQMEEEKTEMIRSYIQEVVQYIKR 1112 Query: 305 EEKFRKWKTENVRRKHNYI 249 E+ + + E + KHN I Sbjct: 1113 LEEAQSKRQEKLVEKHNEI 1131
>CI093_HUMAN (Q6TFL3) Protein C9orf93| Length = 1326 Score = 29.6 bits (65), Expect = 5.1 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = -3 Query: 482 KNRKDVYTAELKELEKKREQILQELSNEATAAAEKESL 369 K + D +T +KEL+ K + +ELS+ T A++E+L Sbjct: 486 KQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREAL 523
>KIF4A_CHICK (Q90640) Chromosome-associated kinesin KIF4A (Chromokinesin)| Length = 1225 Score = 28.9 bits (63), Expect = 8.7 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Frame = -3 Query: 497 LMAIIKNRKDVYTAELKELEKKREQILQ--------ELSNEATAAAEKES-------LNX 363 ++A+ +KDV A+L E +KR Q L+ +L+ +A KES LN Sbjct: 585 ILALSMAKKDVNQAKLSERRRKRLQELEGQINELKKKLNEQAKLLKLKESTERTVSKLNQ 644 Query: 362 XXXXXXXXXXXXXEKIVMEEEKFRKWKTE 276 ++ + EKFR+WK + Sbjct: 645 EIREMKNQRVQLMRQMKEDAEKFRQWKQQ 673 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,410,292 Number of Sequences: 219361 Number of extensions: 525583 Number of successful extensions: 2252 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2246 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
