Clone Name | rbart08f12 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009041.1| Triticum aestivum clone wdk5c.pk006.c9:fis, full insert mRNA sequence Length = 1355 Score = 202 bits (102), Expect = 5e-49 Identities = 196/222 (88%), Gaps = 4/222 (1%) Strand = Plus / Minus Query: 81 aaggccaacacagagtattccccatttgctacacaaagggggactcaaacttgcaagggc 140 |||||||||||| ||||||||||||| ||||||||||| |||| | || |||| ||||| Sbjct: 1230 aaggccaacacaaagtattccccatt-gctacacaaagtgggattaaagcttgacagggc 1172 Query: 141 ttaaatgtcagaccaacactagcagggacagcaaaagcttttatttctgtaaag-gggct 199 || | |||||||||||||||||||||||| || ||||||||||||||||||| | ||||| Sbjct: 1171 ttga-tgtcagaccaacactagcagggac-gccaaagcttttatttctgtaaggagggct 1114 Query: 200 cctttgaacggagggatttggcttcggaaaacagctttgcgcgctcgaggagtctcgggg 259 ||| ||| ||||||||||||||| ||| |||||||| ||||||| |||||||| || || Sbjct: 1113 cctacgaatggagggatttggctttggagaacagcttcgcgcgcttgaggagtcccgagg 1054 Query: 260 atcactccaccaccatgctctcggcctccttcttgatagagt 301 |||||| ||||||||||||||||||||||||||||| |||| Sbjct: 1053 gtcactcgaccaccatgctctcggcctccttcttgatggagt 1012 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 3 ggcaccatgatgctttattgcacactggctgacacatgga 42 ||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1332 ggcaccatgatgctttatttcacactggctgacatatgga 1293
>dbj|D13153.1|WHTCYS1 Triticum aestivum mRNA for O-acetylserine (thiol) lyase Length = 1371 Score = 147 bits (74), Expect = 2e-32 Identities = 189/222 (85%), Gaps = 4/222 (1%) Strand = Plus / Minus Query: 81 aaggccaacacaga-gtattccccatttgctacacaaagggggactcaaacttgcaaggg 139 |||||||||||| | |||||||||||| |||| |||||| |||| | ||||||| ||| Sbjct: 1227 aaggccaacacaaaagtattccccatt-gctaaacaaagtgggattaaaacttgacagga 1169 Query: 140 cttaaatgtcagaccaacactagcagggacagcaaaagcttttatttctgtaaaggggct 199 ||| | |||||||||||||||||||||||| || |||||||||||||||||| ||||| Sbjct: 1168 cttga-tgtcagaccaacactagcagggac-gccaaagcttttatttctgtaggagggct 1111 Query: 200 cctttgaacggagggatttggcttcggaaaacagctttgcgcgctcgaggagtctcgggg 259 ||| ||| | ||||||||||||| ||| |||| || ||||||| |||||||| || | Sbjct: 1110 cctacgaatgtagggatttggctttggagaacacgttcgcgcgcttgaggagtcccgaga 1051 Query: 260 atcactccaccaccatgctctcggcctccttcttgatagagt 301 |||||| ||||||||||||||||||||||||||||| |||| Sbjct: 1050 gtcactcgaccaccatgctctcggcctccttcttgatggagt 1009 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 3 ggcaccatgatgctttattgcacactggctgacacatgga 42 |||||||||||| || ||| |||||||||||||| ||||| Sbjct: 1326 ggcaccatgatgtttcatttcacactggctgacatatgga 1287
>gb|BT016496.1| Zea mays clone Contig329 mRNA sequence Length = 1500 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 268 accaccatgctctcggcctccttcttgat 296 |||||||||||||| || ||||||||||| Sbjct: 1185 accaccatgctctccgcttccttcttgat 1157
>ref|XM_362581.1| Magnaporthe grisea 70-15 hypothetical protein (MG08164.4) partial mRNA Length = 1116 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 gctctcggcctccttcttgat 296 ||||||||||||||||||||| Sbjct: 900 gctctcggcctccttcttgat 880
>ref|XM_711631.1| Candida albicans SC5314 putative protein kinase regulator of (H+)-ATPase (CaO19_3415), mRNA Length = 2439 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 gcaaaagcttttatttctgta 191 ||||||||||||||||||||| Sbjct: 1292 gcaaaagcttttatttctgta 1272
>ref|XM_711571.1| Candida albicans SC5314 putative protein kinase regulator of (H+)-ATPase (CaO19_10918), mRNA Length = 2439 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 gcaaaagcttttatttctgta 191 ||||||||||||||||||||| Sbjct: 1292 gcaaaagcttttatttctgta 1272
>emb|X85803.1|ZMCSOATL Z.mays mRNA for cysteine synthase Length = 1319 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 268 accaccatgctctcggcctccttcttgat 296 |||||||||||||| || ||||||||||| Sbjct: 1040 accaccatgctctccgcttccttcttgat 1012
>emb|AL033391.1|CAC20C1 C.albicans cosmid Ca20C1 Length = 37968 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 gcaaaagcttttatttctgta 191 ||||||||||||||||||||| Sbjct: 33620 gcaaaagcttttatttctgta 33600
>gb|AY849661.1| Magnaporthe grisea disulfide isomerase-like protein mRNA, complete cds Length = 1315 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 gctctcggcctccttcttgat 296 ||||||||||||||||||||| Sbjct: 939 gctctcggcctccttcttgat 919
>gb|AY103651.1| Zea mays PCO145346 mRNA sequence Length = 1483 Score = 42.1 bits (21), Expect = 1.00 Identities = 27/29 (93%) Strand = Plus / Minus Query: 268 accaccatgctctcggcctccttcttgat 296 |||||||||||||| || ||||||||||| Sbjct: 1188 accaccatgctctccgcttccttcttgat 1160
>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence Length = 184603 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gacacatggaattcaaatat 52 |||||||||||||||||||| Sbjct: 59057 gacacatggaattcaaatat 59076
>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057M18 map near E10005S, complete sequence Length = 140920 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 aatcgccagaaggccaacacagag 95 ||||||||||||||||||| |||| Sbjct: 110144 aatcgccagaaggccaacaaagag 110121
>gb|AE017245.1| Mycoplasma synoviae 53, complete genome Length = 799476 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cagcaaaagcttttatttct 188 |||||||||||||||||||| Sbjct: 112956 cagcaaaagcttttatttct 112975
>gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164941 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ttccccatttgctacacaaa 117 |||||||||||||||||||| Sbjct: 136408 ttccccatttgctacacaaa 136427
>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8, complete sequence Length = 218866 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cagaccaacactagcaggga 168 |||||||||||||||||||| Sbjct: 197879 cagaccaacactagcaggga 197898
>gb|AY122198.1| Drosophila melanogaster LD46144 full insert cDNA Length = 887 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ctctcggcctccttcttgat 296 |||||||||||||||||||| Sbjct: 501 ctctcggcctccttcttgat 482
>ref|NM_169155.1| Drosophila melanogaster CG1307-RB (CG1307), mRNA Length = 970 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ctctcggcctccttcttgat 296 |||||||||||||||||||| Sbjct: 602 ctctcggcctccttcttgat 583
>gb|AY063475.1| Goniobasis catenaria dislocata 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 532 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aaagcttttatttctgtaaa 193 |||||||||||||||||||| Sbjct: 269 aaagcttttatttctgtaaa 250
>gb|AY063471.1| Goniobasis proxima isolate race B 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 525 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aaagcttttatttctgtaaa 193 |||||||||||||||||||| Sbjct: 269 aaagcttttatttctgtaaa 250
>ref|XM_686774.1| PREDICTED: Danio rerio similar to relaxin (LOC563417), mRNA Length = 867 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggatcactccaccaccatgc 277 |||||||||||||||||||| Sbjct: 380 ggatcactccaccaccatgc 399
>gb|AC095013.1| Drosophila melanogaster, chromosome 3R, region 83F-83F, BAC clone BACR19I14, complete sequence Length = 175648 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ctctcggcctccttcttgat 296 |||||||||||||||||||| Sbjct: 122296 ctctcggcctccttcttgat 122315
>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170356 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ttccccatttgctacacaaa 117 |||||||||||||||||||| Sbjct: 62108 ttccccatttgctacacaaa 62127
>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence Length = 429825 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ctctcggcctccttcttgat 296 |||||||||||||||||||| Sbjct: 400167 ctctcggcctccttcttgat 400148
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 aatcgccagaaggccaacacagag 95 ||||||||||||||||||| |||| Sbjct: 13752335 aatcgccagaaggccaacaaagag 13752312
>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199439 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cacatggaattcaaatatac 54 |||||||||||||||||||| Sbjct: 152294 cacatggaattcaaatatac 152275
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 acagcaaaagcttttatttc 187 |||||||||||||||||||| Sbjct: 1523191 acagcaaaagcttttatttc 1523210
>emb|BX322567.4| Zebrafish DNA sequence from clone CH211-240G9 in linkage group 18, complete sequence Length = 169628 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aaagcttttatttctgtaaa 193 |||||||||||||||||||| Sbjct: 107653 aaagcttttatttctgtaaa 107634
>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7, complete sequence Length = 197927 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cagaccaacactagcaggga 168 |||||||||||||||||||| Sbjct: 64945 cagaccaacactagcaggga 64926
>gb|AF101000.1|AF101000 Leptoxis virgata 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 859 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aaagcttttatttctgtaaa 193 |||||||||||||||||||| Sbjct: 220 aaagcttttatttctgtaaa 201
>gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10 of 118 of the complete sequence Length = 298020 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ctctcggcctccttcttgat 296 |||||||||||||||||||| Sbjct: 176440 ctctcggcctccttcttgat 176459
>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete sequence Length = 244140 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ttccccatttgctacacaaa 117 |||||||||||||||||||| Sbjct: 73393 ttccccatttgctacacaaa 73412
>emb|BX530024.6| Zebrafish DNA sequence from clone RP71-39B20, complete sequence Length = 146464 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggatcactccaccaccatgc 277 |||||||||||||||||||| Sbjct: 66718 ggatcactccaccaccatgc 66737
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 aatcgccagaaggccaacacagag 95 ||||||||||||||||||| |||| Sbjct: 13834333 aatcgccagaaggccaacaaagag 13834310
>gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 DS00004 (D12)), complete sequence Length = 85757 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ctctcggcctccttcttgat 296 |||||||||||||||||||| Sbjct: 29659 ctctcggcctccttcttgat 29678
>emb|AM161139.1| Danio rerio partial mRNA for Relaxin 3c (rlx 3c gene) Length = 552 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggatcactccaccaccatgc 277 |||||||||||||||||||| Sbjct: 435 ggatcactccaccaccatgc 454
>gb|AY834225.1| Danio rerio relaxin 3c mRNA, complete cds Length = 462 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggatcactccaccaccatgc 277 |||||||||||||||||||| Sbjct: 342 ggatcactccaccaccatgc 361
>dbj|AB040503.1| Allium tuberosum Bsas1 mRNA for cysteine synthase, complete cds Length = 1671 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 caccatgctctcggcctccttctt 293 |||||||||||||||||| ||||| Sbjct: 1382 caccatgctctcggcctctttctt 1359 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,818,276 Number of Sequences: 3902068 Number of extensions: 2818276 Number of successful extensions: 47488 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47396 Number of HSP's gapped (non-prelim): 87 length of query: 301 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 279 effective length of database: 17,147,199,772 effective search space: 4784068736388 effective search space used: 4784068736388 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)