ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009041.1| Triticum aestivum clone wdk5c.pk006.c9:fis, full ... 202 5e-49
2dbj|D13153.1|WHTCYS1 Triticum aestivum mRNA for O-acetylserine (... 147 2e-32
3gb|BT016496.1| Zea mays clone Contig329 mRNA sequence 42 1.00
4ref|XM_362581.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.00
5ref|XM_711631.1| Candida albicans SC5314 putative protein kinase... 42 1.00
6ref|XM_711571.1| Candida albicans SC5314 putative protein kinase... 42 1.00
7emb|X85803.1|ZMCSOATL Z.mays mRNA for cysteine synthase 42 1.00
8emb|AL033391.1|CAC20C1 C.albicans cosmid Ca20C1 42 1.00
9gb|AY849661.1| Magnaporthe grisea disulfide isomerase-like prote... 42 1.00
10gb|AY103651.1| Zea mays PCO145346 mRNA sequence 42 1.00
11gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, comple... 40 3.9
12gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
13gb|AE017245.1| Mycoplasma synoviae 53, complete genome 40 3.9
14gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell ... 40 3.9
15emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in... 40 3.9
16gb|AY122198.1| Drosophila melanogaster LD46144 full insert cDNA 40 3.9
17ref|NM_169155.1| Drosophila melanogaster CG1307-RB (CG1307), mRNA 40 3.9
18gb|AY063475.1| Goniobasis catenaria dislocata 16S ribosomal RNA ... 40 3.9
19gb|AY063471.1| Goniobasis proxima isolate race B 16S ribosomal R... 40 3.9
20ref|XM_686774.1| PREDICTED: Danio rerio similar to relaxin (LOC5... 40 3.9
21gb|AC095013.1| Drosophila melanogaster, chromosome 3R, region 83... 40 3.9
22gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswel... 40 3.9
23gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT... 40 3.9
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
25gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cance... 40 3.9
26dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 3.9
27emb|BX322567.4| Zebrafish DNA sequence from clone CH211-240G9 in... 40 3.9
28emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 i... 40 3.9
29gb|AF101000.1|AF101000 Leptoxis virgata 16S ribosomal RNA gene, ... 40 3.9
30gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10... 40 3.9
31gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37... 40 3.9
32emb|BX530024.6| Zebrafish DNA sequence from clone RP71-39B20, co... 40 3.9
33gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
34gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 ... 40 3.9
35emb|AM161139.1| Danio rerio partial mRNA for Relaxin 3c (rlx 3c ... 40 3.9
36gb|AY834225.1| Danio rerio relaxin 3c mRNA, complete cds 40 3.9
37dbj|AB040503.1| Allium tuberosum Bsas1 mRNA for cysteine synthas... 40 3.9

>gb|BT009041.1| Triticum aestivum clone wdk5c.pk006.c9:fis, full insert mRNA sequence
          Length = 1355

 Score =  202 bits (102), Expect = 5e-49
 Identities = 196/222 (88%), Gaps = 4/222 (1%)
 Strand = Plus / Minus

                                                                        
Query: 81   aaggccaacacagagtattccccatttgctacacaaagggggactcaaacttgcaagggc 140
            |||||||||||| ||||||||||||| ||||||||||| |||| | || ||||  |||||
Sbjct: 1230 aaggccaacacaaagtattccccatt-gctacacaaagtgggattaaagcttgacagggc 1172

                                                                        
Query: 141  ttaaatgtcagaccaacactagcagggacagcaaaagcttttatttctgtaaag-gggct 199
            || | |||||||||||||||||||||||| || ||||||||||||||||||| | |||||
Sbjct: 1171 ttga-tgtcagaccaacactagcagggac-gccaaagcttttatttctgtaaggagggct 1114

                                                                        
Query: 200  cctttgaacggagggatttggcttcggaaaacagctttgcgcgctcgaggagtctcgggg 259
            |||  ||| ||||||||||||||| ||| |||||||| ||||||| |||||||| || ||
Sbjct: 1113 cctacgaatggagggatttggctttggagaacagcttcgcgcgcttgaggagtcccgagg 1054

                                                      
Query: 260  atcactccaccaccatgctctcggcctccttcttgatagagt 301
             |||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1053 gtcactcgaccaccatgctctcggcctccttcttgatggagt 1012



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 3    ggcaccatgatgctttattgcacactggctgacacatgga 42
            ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1332 ggcaccatgatgctttatttcacactggctgacatatgga 1293



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>dbj|D13153.1|WHTCYS1 Triticum aestivum mRNA for O-acetylserine (thiol) lyase
          Length = 1371

 Score =  147 bits (74), Expect = 2e-32
 Identities = 189/222 (85%), Gaps = 4/222 (1%)
 Strand = Plus / Minus

                                                                        
Query: 81   aaggccaacacaga-gtattccccatttgctacacaaagggggactcaaacttgcaaggg 139
            |||||||||||| | |||||||||||| |||| |||||| |||| | |||||||  ||| 
Sbjct: 1227 aaggccaacacaaaagtattccccatt-gctaaacaaagtgggattaaaacttgacagga 1169

                                                                        
Query: 140  cttaaatgtcagaccaacactagcagggacagcaaaagcttttatttctgtaaaggggct 199
            ||| | |||||||||||||||||||||||| || ||||||||||||||||||   |||||
Sbjct: 1168 cttga-tgtcagaccaacactagcagggac-gccaaagcttttatttctgtaggagggct 1111

                                                                        
Query: 200  cctttgaacggagggatttggcttcggaaaacagctttgcgcgctcgaggagtctcgggg 259
            |||  ||| | ||||||||||||| ||| ||||  || ||||||| |||||||| || | 
Sbjct: 1110 cctacgaatgtagggatttggctttggagaacacgttcgcgcgcttgaggagtcccgaga 1051

                                                      
Query: 260  atcactccaccaccatgctctcggcctccttcttgatagagt 301
             |||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1050 gtcactcgaccaccatgctctcggcctccttcttgatggagt 1009



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 3    ggcaccatgatgctttattgcacactggctgacacatgga 42
            |||||||||||| || ||| |||||||||||||| |||||
Sbjct: 1326 ggcaccatgatgtttcatttcacactggctgacatatgga 1287



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>gb|BT016496.1| Zea mays clone Contig329 mRNA sequence
          Length = 1500

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 268  accaccatgctctcggcctccttcttgat 296
            |||||||||||||| || |||||||||||
Sbjct: 1185 accaccatgctctccgcttccttcttgat 1157



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>ref|XM_362581.1| Magnaporthe grisea 70-15 hypothetical protein (MG08164.4) partial
           mRNA
          Length = 1116

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 276 gctctcggcctccttcttgat 296
           |||||||||||||||||||||
Sbjct: 900 gctctcggcctccttcttgat 880



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>ref|XM_711631.1| Candida albicans SC5314 putative protein kinase regulator of
            (H+)-ATPase (CaO19_3415), mRNA
          Length = 2439

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 171  gcaaaagcttttatttctgta 191
            |||||||||||||||||||||
Sbjct: 1292 gcaaaagcttttatttctgta 1272



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>ref|XM_711571.1| Candida albicans SC5314 putative protein kinase regulator of
            (H+)-ATPase (CaO19_10918), mRNA
          Length = 2439

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 171  gcaaaagcttttatttctgta 191
            |||||||||||||||||||||
Sbjct: 1292 gcaaaagcttttatttctgta 1272



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>emb|X85803.1|ZMCSOATL Z.mays mRNA for cysteine synthase
          Length = 1319

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 268  accaccatgctctcggcctccttcttgat 296
            |||||||||||||| || |||||||||||
Sbjct: 1040 accaccatgctctccgcttccttcttgat 1012



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>emb|AL033391.1|CAC20C1 C.albicans cosmid Ca20C1
          Length = 37968

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   gcaaaagcttttatttctgta 191
             |||||||||||||||||||||
Sbjct: 33620 gcaaaagcttttatttctgta 33600



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>gb|AY849661.1| Magnaporthe grisea disulfide isomerase-like protein mRNA, complete
           cds
          Length = 1315

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 276 gctctcggcctccttcttgat 296
           |||||||||||||||||||||
Sbjct: 939 gctctcggcctccttcttgat 919



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>gb|AY103651.1| Zea mays PCO145346 mRNA sequence
          Length = 1483

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 268  accaccatgctctcggcctccttcttgat 296
            |||||||||||||| || |||||||||||
Sbjct: 1188 accaccatgctctccgcttccttcttgat 1160



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>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence
          Length = 184603

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    gacacatggaattcaaatat 52
             ||||||||||||||||||||
Sbjct: 59057 gacacatggaattcaaatat 59076



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>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057M18
              map near E10005S, complete sequence
          Length = 140920

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     aatcgccagaaggccaacacagag 95
              ||||||||||||||||||| ||||
Sbjct: 110144 aatcgccagaaggccaacaaagag 110121



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>gb|AE017245.1| Mycoplasma synoviae 53, complete genome
          Length = 799476

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    cagcaaaagcttttatttct 188
              ||||||||||||||||||||
Sbjct: 112956 cagcaaaagcttttatttct 112975



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>gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 164941

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     ttccccatttgctacacaaa 117
              ||||||||||||||||||||
Sbjct: 136408 ttccccatttgctacacaaa 136427



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>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8,
              complete sequence
          Length = 218866

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    cagaccaacactagcaggga 168
              ||||||||||||||||||||
Sbjct: 197879 cagaccaacactagcaggga 197898



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>gb|AY122198.1| Drosophila melanogaster LD46144 full insert cDNA
          Length = 887

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 ctctcggcctccttcttgat 296
           ||||||||||||||||||||
Sbjct: 501 ctctcggcctccttcttgat 482



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>ref|NM_169155.1| Drosophila melanogaster CG1307-RB (CG1307), mRNA
          Length = 970

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 ctctcggcctccttcttgat 296
           ||||||||||||||||||||
Sbjct: 602 ctctcggcctccttcttgat 583



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>gb|AY063475.1| Goniobasis catenaria dislocata 16S ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 532

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 174 aaagcttttatttctgtaaa 193
           ||||||||||||||||||||
Sbjct: 269 aaagcttttatttctgtaaa 250



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>gb|AY063471.1| Goniobasis proxima isolate race B 16S ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 525

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 174 aaagcttttatttctgtaaa 193
           ||||||||||||||||||||
Sbjct: 269 aaagcttttatttctgtaaa 250



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>ref|XM_686774.1| PREDICTED: Danio rerio similar to relaxin (LOC563417), mRNA
          Length = 867

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 ggatcactccaccaccatgc 277
           ||||||||||||||||||||
Sbjct: 380 ggatcactccaccaccatgc 399



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>gb|AC095013.1| Drosophila melanogaster, chromosome 3R, region 83F-83F, BAC clone
              BACR19I14, complete sequence
          Length = 175648

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    ctctcggcctccttcttgat 296
              ||||||||||||||||||||
Sbjct: 122296 ctctcggcctccttcttgat 122315



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>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 170356

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    ttccccatttgctacacaaa 117
             ||||||||||||||||||||
Sbjct: 62108 ttccccatttgctacacaaa 62127



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>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence
          Length = 429825

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    ctctcggcctccttcttgat 296
              ||||||||||||||||||||
Sbjct: 400167 ctctcggcctccttcttgat 400148



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 72       aatcgccagaaggccaacacagag 95
                ||||||||||||||||||| ||||
Sbjct: 13752335 aatcgccagaaggccaacaaagag 13752312



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>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 199439

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cacatggaattcaaatatac 54
              ||||||||||||||||||||
Sbjct: 152294 cacatggaattcaaatatac 152275



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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     acagcaaaagcttttatttc 187
               ||||||||||||||||||||
Sbjct: 1523191 acagcaaaagcttttatttc 1523210



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>emb|BX322567.4| Zebrafish DNA sequence from clone CH211-240G9 in linkage group 18,
              complete sequence
          Length = 169628

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    aaagcttttatttctgtaaa 193
              ||||||||||||||||||||
Sbjct: 107653 aaagcttttatttctgtaaa 107634



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>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7,
             complete sequence
          Length = 197927

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   cagaccaacactagcaggga 168
             ||||||||||||||||||||
Sbjct: 64945 cagaccaacactagcaggga 64926



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>gb|AF101000.1|AF101000 Leptoxis virgata 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 859

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 174 aaagcttttatttctgtaaa 193
           ||||||||||||||||||||
Sbjct: 220 aaagcttttatttctgtaaa 201



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>gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10 of 118 of the complete
              sequence
          Length = 298020

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    ctctcggcctccttcttgat 296
              ||||||||||||||||||||
Sbjct: 176440 ctctcggcctccttcttgat 176459



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>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete
             sequence
          Length = 244140

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    ttccccatttgctacacaaa 117
             ||||||||||||||||||||
Sbjct: 73393 ttccccatttgctacacaaa 73412



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>emb|BX530024.6| Zebrafish DNA sequence from clone RP71-39B20, complete sequence
          Length = 146464

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   ggatcactccaccaccatgc 277
             ||||||||||||||||||||
Sbjct: 66718 ggatcactccaccaccatgc 66737



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 72       aatcgccagaaggccaacacagag 95
                ||||||||||||||||||| ||||
Sbjct: 13834333 aatcgccagaaggccaacaaagag 13834310



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>gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 DS00004 (D12)), complete
             sequence
          Length = 85757

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ctctcggcctccttcttgat 296
             ||||||||||||||||||||
Sbjct: 29659 ctctcggcctccttcttgat 29678



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>emb|AM161139.1| Danio rerio partial mRNA for Relaxin 3c (rlx 3c gene)
          Length = 552

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 ggatcactccaccaccatgc 277
           ||||||||||||||||||||
Sbjct: 435 ggatcactccaccaccatgc 454



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>gb|AY834225.1| Danio rerio relaxin 3c mRNA, complete cds
          Length = 462

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 ggatcactccaccaccatgc 277
           ||||||||||||||||||||
Sbjct: 342 ggatcactccaccaccatgc 361



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>dbj|AB040503.1| Allium tuberosum Bsas1 mRNA for cysteine synthase, complete cds
          Length = 1671

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 270  caccatgctctcggcctccttctt 293
            |||||||||||||||||| |||||
Sbjct: 1382 caccatgctctcggcctctttctt 1359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,818,276
Number of Sequences: 3902068
Number of extensions: 2818276
Number of successful extensions: 47488
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47396
Number of HSP's gapped (non-prelim): 87
length of query: 301
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 279
effective length of database: 17,147,199,772
effective search space: 4784068736388
effective search space used: 4784068736388
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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