ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MPRI_BOVIN (P08169) Cation-independent mannose-6-phosphate recep... 30 4.2
2UVRC_CORDI (Q6NH31) UvrABC system protein C (Protein uvrC) (Exci... 28 9.4

>MPRI_BOVIN (P08169) Cation-independent mannose-6-phosphate receptor precursor|
            (CI Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like
            growth factor 2 receptor) (Insulin-like growth factor II
            receptor) (IGF-II receptor) (300 kDa mannose 6-phosphate
            receptor)
          Length = 2499

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 381  YTSGGPWFELYKDCEFADLW 322
            +T+G P F+L  DCE+  LW
Sbjct: 1201 HTTGSPTFQLQNDCEYVFLW 1220



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>UVRC_CORDI (Q6NH31) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 687

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 18  YWILGPQ--GTRLTGPYSYTWYSIVTLAVGTNLTTART 125
           Y+  GPQ  G R  GPYS+ W    TL + T +   RT
Sbjct: 118 YFYRGPQRKGVRYYGPYSHAWAVRETLDLLTRVFPIRT 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,217,177
Number of Sequences: 219361
Number of extensions: 919868
Number of successful extensions: 2181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2181
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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