>emb|AL035088.1|HS3D11 Human DNA sequence from clone RP1-3D11 on chromosome Xq22.1-23
            Contains a pseudogene similar to part of  keratin 18
            (K18, CYK18) (KRT18), a novel gene, the 5' end of a novel
            gene and two CpG islands, complete sequence
          Length = 146358

 Score = 40.1 bits (20), Expect = 0.50
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   atttattccatggagaaact 44
            ||||||||||||||||||||
Sbjct: 9831 atttattccatggagaaact 9812

>gb|AC149226.11| Danio rerio clone ch211-252j18, complete sequence
          Length = 154059

 Score = 40.1 bits (20), Expect = 0.50
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     gaaggcaaactggagcttta 25
             ||||||||||||||||||||
Sbjct: 69953 gaaggcaaactggagcttta 69972

>gb|AC159628.2| Mus musculus BAC clone RP24-206C4 from chromosome 12, complete sequence
          Length = 161791

 Score = 40.1 bits (20), Expect = 0.50
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaggcaaactggagctttat 26
             ||||||||||||||||||||
Sbjct: 64903 aaggcaaactggagctttat 64884

>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15,
             complete sequence
          Length = 224998

 Score = 40.1 bits (20), Expect = 0.50
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     gaaggcaaactggagcttta 25
             ||||||||||||||||||||
Sbjct: 25502 gaaggcaaactggagcttta 25483

>emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chromosome 10 Contains the
              C10orf3 gene for chromosome 10 open reading frame 3, the
              RBP4 gene for retinol binding protein 4 (plasma), the 5'
              end of the PDE6C gene for phosphodiesterase 6C
              (cGMP-specific, cone, alpha prime), the GPR120 gene for G
              protein-coupled receptor 120 and three CpG islands,
              complete sequence
          Length = 163964

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 19     agctttatttattccatggagaa 41
              ||||||||||||| |||||||||
Sbjct: 161481 agctttatttatttcatggagaa 161459

>dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding protein4, complete cds
          Length = 173042

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 19    agctttatttattccatggagaa 41
             ||||||||||||| |||||||||
Sbjct: 66356 agctttatttatttcatggagaa 66378

>gb|AF146687.1|FRNINE1 Fugu rubripes U2 small nuclear ribonucleoprotein auxiliary factor
             subunit-related protein (U2AF1-RS2), 19 kDa Golgi adaptor
             protein adaptin (AP19), and phosphorylase kinase alpha 2
             subunit (PHKA2) genes, complete cds; kelch protein
             (KELCH1) and kelch protein (KELCH2) genes, partial cds;
             and protein phosphatase 1 (PPEF-1), X-linked juvenile
             retinoschisis precursor protein (XLRS1), and
             serine-threonine kinase 9 (STK9) genes, complete cds
          Length = 62576

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     gggggaaggcaaactggag 20
             |||||||||||||||||||
Sbjct: 43182 gggggaaggcaaactggag 43164

>gb|BT018288.1| Zea mays clone EL01T0205D01.c mRNA sequence
          Length = 1340

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 34  atggagaaacttttacaa 51
           ||||||||||||||||||
Sbjct: 498 atggagaaacttttacaa 515

>gb|AC111104.10| Mus musculus chromosome 3, clone RP23-187F18, complete sequence
          Length = 222158

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 5      ggaaggcaaactggagct 22
              ||||||||||||||||||
Sbjct: 129895 ggaaggcaaactggagct 129878

>gb|AC004520.2| Homo sapiens BAC clone CTB-119C2 from 7, complete sequence
          Length = 132557

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    ttccatggagaaactttt 47
             ||||||||||||||||||
Sbjct: 33231 ttccatggagaaactttt 33214

>gb|AC147302.2| Pan troglodytes BAC clone RP43-55L5 from 7, complete sequence
          Length = 191336

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    ttccatggagaaactttt 47
             ||||||||||||||||||
Sbjct: 70508 ttccatggagaaactttt 70491

>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence
          Length = 159703

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 37     gagaaacttttacaactg 54
              ||||||||||||||||||
Sbjct: 113904 gagaaacttttacaactg 113921

>gb|AF016421.1| Caenorhabditis elegans cosmid F44E7, complete sequence
          Length = 22480

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 18   gagctttatttattccat 35
            ||||||||||||||||||
Sbjct: 2262 gagctttatttattccat 2245

>emb|AL356244.12| Human DNA sequence from clone RP11-174M15 on chromosome 9 Contains the
             5' end of the gene for COBW-like protein (LOC55871), 2
             novel genes, the 5' end of a novel gene (contains FLJ36253
             and FLJ00026) and a CpG island, complete sequence
          Length = 175153

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 5     ggaaggcaaactggagct 22
             ||||||||||||||||||
Sbjct: 96525 ggaaggcaaactggagct 96542

>gb|AE008903.1| Salmonella typhimurium LT2, section 207 of 220 of the complete genome
          Length = 20869

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    gggaaggcaaactggagc 21
            ||||||||||||||||||
Sbjct: 4106 gggaaggcaaactggagc 4089

>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 19/20
          Length = 249050

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     gggaaggcaaactggagc 21
             ||||||||||||||||||
Sbjct: 73739 gggaaggcaaactggagc 73722

>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence
          Length = 228486

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 37     gagaaacttttacaactg 54
              ||||||||||||||||||
Sbjct: 129523 gagaaacttttacaactg 129540

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 2       gggggaaggcaaactgga 19
               ||||||||||||||||||
Sbjct: 1885631 gggggaaggcaaactgga 1885614

>emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 in linkage group 10,
            complete sequence
          Length = 167208

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 20   gctttatttattccatggagaa 41
            ||||||||||||||||| ||||
Sbjct: 2392 gctttatttattccatgaagaa 2413

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 26       tttattccatggagaaac 43
                ||||||||||||||||||
Sbjct: 30816417 tttattccatggagaaac 30816400

>gb|AC146071.3| Pan troglodytes BAC clone RP43-64L21 from chromosome 7, complete sequence
          Length = 207055

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 30     ttccatggagaaactttt 47
              ||||||||||||||||||
Sbjct: 105199 ttccatggagaaactttt 105182

>gb|AC013406.7| Homo sapiens BAC clone RP11-341F20 from 2, complete sequence
          Length = 190018

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 24   tatttattccatggagaa 41
            ||||||||||||||||||
Sbjct: 2216 tatttattccatggagaa 2199

>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0021A09
          Length = 127973

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttattccatggagaaac 43
              ||||||||||||||||||
Sbjct: 105692 tttattccatggagaaac 105675

>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0638D12
          Length = 161277

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttattccatggagaaac 43
             ||||||||||||||||||
Sbjct: 16784 tttattccatggagaaac 16767

>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 4       gggaaggcaaactggagc 21
               ||||||||||||||||||
Sbjct: 4318984 gggaaggcaaactggagc 4318967

>dbj|AK101943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074K07, full
            insert sequence
          Length = 2669

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   tttattccatggagaaac 43
            ||||||||||||||||||
Sbjct: 2583 tttattccatggagaaac 2566

>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10,
             complete sequence
          Length = 129782

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 20    gctttatttattccatggagaa 41
             ||||||||||||||||| ||||
Sbjct: 48807 gctttatttattccatgaagaa 48828

>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 4       gggaaggcaaactggagc 21
               ||||||||||||||||||
Sbjct: 4528641 gggaaggcaaactggagc 4528624

>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 4       gggaaggcaaactggagc 21
               ||||||||||||||||||
Sbjct: 4503946 gggaaggcaaactggagc 4503929

>emb|AL352978.6|CNS05TBX Human chromosome 14 DNA sequence BAC C-3059L23 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 141450

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 38    agaaacttttacaactgg 55
             ||||||||||||||||||
Sbjct: 87184 agaaacttttacaactgg 87167

>emb|AL732636.1| Tetraodon DNA sequence from clone XX-C0AA050BF02, complete sequence
          Length = 133117

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 35    tggagaaacttttacaac 52
             ||||||||||||||||||
Sbjct: 90703 tggagaaacttttacaac 90686


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 781,674
Number of Sequences: 3902068
Number of extensions: 781674
Number of successful extensions: 175312
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 175111
Number of HSP's gapped (non-prelim): 201
length of query: 55
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 35
effective length of database: 17,155,003,908
effective search space: 600425136780
effective search space used: 600425136780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)