ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSA3_ORYSA (Q9LSU0) Proteasome subunit alpha type 3 (EC 3.4.25.1... 37 0.023
2PSA3_ARATH (O23715) Proteasome subunit alpha type 3 (EC 3.4.25.1... 34 0.25
3PSA3_SPIOL (O24362) Proteasome subunit alpha type 3 (EC 3.4.25.1... 33 0.56
4OR4Q3_HUMAN (Q8NH05) Olfactory receptor 4Q3 (Olfactory receptor ... 29 6.2
5Y231_BUCAP (Q8K9S5) Hypothetical protein BUsg231 precursor 29 8.1

>PSA3_ORYSA (Q9LSU0) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S|
           proteasome alpha subunit G) (20S proteasome subunit
           alpha-7)
          Length = 249

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = -2

Query: 501 LSWVCEESNRQHEKVPS 451
           LSW+C+ESNRQH+KVP+
Sbjct: 213 LSWICDESNRQHQKVPA 229



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>PSA3_ARATH (O23715) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome|
           subunit alpha type 7) (20S proteasome alpha subunit G-1)
           (Proteasome component 8) (DiDi 17A-2a)
          Length = 249

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = -2

Query: 501 LSWVCEESNRQHEKVP 454
           +SW+CEES R+H+KVP
Sbjct: 213 MSWICEESKREHQKVP 228



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>PSA3_SPIOL (O24362) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S|
           proteasome alpha subunit G) (20S proteasome subunit
           alpha-7) (Proteasome component C8)
          Length = 249

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = -2

Query: 501 LSWVCEESNRQHEKVP 454
           +SW+C+ES R+H+KVP
Sbjct: 213 MSWICDESKREHQKVP 228



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>OR4Q3_HUMAN (Q8NH05) Olfactory receptor 4Q3 (Olfactory receptor OR14-3)|
          Length = 313

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -2

Query: 273 IPVEVLANRSVLSLLCWLHLIFY*ILSDLKNLSLIYLSLRCHY 145
           + V V+AN  +LSL+C+L L+F        + ++I ++LR H+
Sbjct: 196 VEVLVIANSGLLSLVCFLVLLF--------SYAIILITLRTHF 230



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>Y231_BUCAP (Q8K9S5) Hypothetical protein BUsg231 precursor|
          Length = 799

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -2

Query: 192 DLKNLSLIYLSLRCHYSNLRARGMR----ENRHRTCVYPKFSIQPEINDSIILGSLYFLY 25
           DLKNLS  YL+   +Y N+  + +R    +N+    VY     + +I++  + G+L   Y
Sbjct: 222 DLKNLSNFYLNQGYYYFNIHRKKVRFLKDKNKVNITVYISEGKKYKISNFFLNGNLLQYY 281

Query: 24  KS 19
           +S
Sbjct: 282 QS 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,575,820
Number of Sequences: 219361
Number of extensions: 864695
Number of successful extensions: 1825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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