ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
2dbj|AK061784.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
3dbj|AB026562.1| Oryza sativa (japonica cultivar-group) OsPAG1 mR... 86 1e-13
4gb|BT017004.1| Zea mays clone EK07D2310A08.c mRNA sequence 80 8e-12
5ref|NM_191042.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
6gb|BT017777.1| Zea mays clone EL01N0503B10.c mRNA sequence 72 2e-09
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
9dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
10gb|AY109645.1| Zea mays CL4356_2 mRNA sequence 72 2e-09
11ref|XM_475461.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
12gb|BT013996.1| Lycopersicon esculentum clone 133043F, mRNA sequence 44 0.44
13emb|AL663015.5|OSJN00213 Oryza sativa genomic DNA, chromosome 4,... 44 0.44
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
15gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 44 0.44
16gb|AC060225.12| Homo sapiens 3 BAC RP11-23J16 (Roswell Park Canc... 42 1.7
17gb|AC147879.2| Xenopus tropicalis clone CH216-108K9, complete se... 42 1.7
18gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, comp... 42 1.7
19gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, compl... 42 1.7
20ref|XM_631612.1| Dictyostelium discoideum AX4 hypothetical prote... 42 1.7
21gb|AC024801.2| Caenorhabditis elegans cosmid Y50D7A, complete se... 42 1.7
22gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome... 40 6.8
23gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
24gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, com... 40 6.8
25ref|XM_390772.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 6.8
26gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL03... 40 6.8
27emb|AL034406.1|HS571B2 Human DNA sequence from clone RP4-571B2 o... 40 6.8
28emb|AJ586898.1| Platanus acerifolia partial mRNA for polygalactu... 40 6.8
29emb|CR847783.6| Zebrafish DNA sequence from clone DKEYP-2C8 in l... 40 6.8
30gb|AC092997.6| Homo sapiens 3 BAC RP11-711L14 (Roswell Park Canc... 40 6.8
31gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, compl... 40 6.8
32gb|BC113948.1| Rattus norvegicus cDNA clone MGC:124733 IMAGE:793... 40 6.8
33emb|BX511180.7| Zebrafish DNA sequence from clone CH211-221H1 in... 40 6.8
34gb|AC153764.3| Loxodonta africana clone VMRC15-169D19, complete ... 40 6.8
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
36gb|AC011247.10| Homo sapiens BAC clone RP11-541E12 from 2, compl... 40 6.8
37gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, compl... 40 6.8
38gb|AC016706.6| Homo sapiens BAC clone RP11-215D12 from 2, comple... 40 6.8
39gb|AC074019.7| Homo sapiens BAC clone RP11-271M11 from 2, comple... 40 6.8
40ref|XM_340818.2| PREDICTED: Rattus norvegicus myosin, heavy poly... 40 6.8
41gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete... 40 6.8
42dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
43dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, ... 40 6.8
44dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.8
45emb|Z69793.1|CER03A10 Caenorhabditis elegans Cosmid R03A10, comp... 40 6.8
46gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, co... 40 6.8
47gb|AF097313.1|AF097313 Xenopus laevis axin mRNA, complete cds 40 6.8
48emb|BX119994.7| Mouse DNA sequence from clone RP23-272G10 on chr... 40 6.8
49gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complet... 40 6.8 
>dbj|AK103541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132C12, full
            insert sequence
          Length = 1188

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                        
Query: 380  gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 439
            ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 1012 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 953

                                                                       
Query: 440  tccagaagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagct 498
            |||| |||||||   ||||||||||  ||||| || || ||||| ||||||| ||||||
Sbjct: 952  tccaaaagatcagcaggaaccttctgatgctggcgatttgattcatcacatatccagct 894
to top
>dbj|AK061784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E06, full
           insert sequence
          Length = 1120

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                       
Query: 380 gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 439
           ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 944 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 885

                                                                      
Query: 440 tccagaagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagct 498
           |||| |||||||   ||||||||||  ||||| || || ||||| ||||||| ||||||
Sbjct: 884 tccaaaagatcagcaggaaccttctgatgctggcgatttgattcatcacatatccagct 826
to top
>dbj|AB026562.1| Oryza sativa (japonica cultivar-group) OsPAG1 mRNA for alpha 7
           subunit of 20S proteasome, complete cds
          Length = 1091

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                       
Query: 380 gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 439
           ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 908 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 849

                                                                      
Query: 440 tccagaagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagct 498
           |||| |||||||   ||||||||||  ||||| || || ||||| ||||||| ||||||
Sbjct: 848 tccaaaagatcagcaggaaccttctgatgctggcgatttgattcatcacatatccagct 790
to top
>gb|BT017004.1| Zea mays clone EK07D2310A08.c mRNA sequence
          Length = 1256

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                        
Query: 385  ttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccag 444
            ||||||||||||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 1003 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 944

                                                                    
Query: 445  aagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctca 500
             || ||| | ||||||||||  ||||||||||| ||||| ||||| | ||||||||
Sbjct: 943  cagttcatttggaaccttctgatgctgacggttcgattcatcacagatccagctca 888
to top
>ref|NM_191042.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                       
Query: 392 tcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccagaagatca 451
           |||||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||
Sbjct: 746 tcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatca 687

                                                          
Query: 452 ctcggaaccttctcgtgctgacggttagattcctcacatacccagct 498
              ||||||||||  ||||| || || ||||| ||||||| ||||||
Sbjct: 686 gcaggaaccttctgatgctggcgatttgattcatcacatatccagct 640
to top
>gb|BT017777.1| Zea mays clone EL01N0503B10.c mRNA sequence
          Length = 1266

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Minus

                                                                       
Query: 385 ttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccag 444
           ||||||||||||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 939 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 880

                                                                   
Query: 445 aagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctca 500
            || ||| | ||| ||||||  ||||||||||| ||||| ||||| | ||||||||
Sbjct: 879 cagttcatttggacccttctgatgctgacggttcgattcatcacagatccagctca 824
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 380      gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 439
                ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 34468556 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 34468497

                            
Query: 440      tccagaagatca 451
                |||| |||||||
Sbjct: 34468496 tccaaaagatca 34468485



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 420      gcgctgctgccttggcctgc 439
                ||||||||||||||||||||
Sbjct: 33287030 gcgctgctgccttggcctgc 33287011
to top
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468B07
          Length = 169071

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                          
Query: 380    gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 439
              ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 150900 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 150841

                          
Query: 440    tccagaagatca 451
              |||| |||||||
Sbjct: 150840 tccaaaagatca 150829
to top
>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0425G02
          Length = 155432

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                         
Query: 380   gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 439
             ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 44275 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 44216

                         
Query: 440   tccagaagatca 451
             |||| |||||||
Sbjct: 44215 tccaaaagatca 44204
to top
>gb|AY109645.1| Zea mays CL4356_2 mRNA sequence
          Length = 1252

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Plus

                                                                       
Query: 385 ttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccag 444
           ||||||||||||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 284 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 343

                                                                   
Query: 445 aagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctca 500
            || ||| | ||||||||||  ||||| ||||| ||||| ||||| | ||||||||
Sbjct: 344 cagttcatttggaaccttctgatgctggcggttcgattcatcacagatccagctca 399
to top
>ref|XM_475461.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Minus

                                                                       
Query: 389 tagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccagaaga 448
           ||||| || |||||||| || | ||||||||| || |||||||| ||||||||||  || 
Sbjct: 749 tagtctgcgtccatctcctcgagcgctgcctgggcggctgccttcgcctgctccacgagg 690

                                                                
Query: 449 tcactcggaaccttctcgtgctgacggttagattcctcacatacccagctcag 501
           ||    ||||||||||| ||||| || || ||||| || ||||||||||||||
Sbjct: 689 tcgtctggaaccttctcatgctggcgctttgattcatcgcatacccagctcag 637
to top
>gb|BT013996.1| Lycopersicon esculentum clone 133043F, mRNA sequence
          Length = 1134

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 455 ggaaccttctcgtgctgacggttagattcctcacatacccagctca 500
           ||||||||||  || || |||||||| || ||||||||||||||||
Sbjct: 787 ggaaccttctgatgttggcggttagactcatcacatacccagctca 742
to top
>emb|AL663015.5|OSJN00213 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0068N06,
              complete sequence
          Length = 172895

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 16     ctaacttttatataggaaatataggc 41
              ||||||||||||||| ||||||||||
Sbjct: 112640 ctaacttttatatagtaaatataggc 112615
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 16       ctaacttttatataggaaatataggc 41
                ||||||||||||||| ||||||||||
Sbjct: 12964381 ctaacttttatatagtaaatataggc 12964356
to top
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 423     ctgctgccttggcctgctccag 444
               ||||||||||||||||||||||
Sbjct: 1904782 ctgctgccttggcctgctccag 1904761
to top
>gb|AC060225.12| Homo sapiens 3 BAC RP11-23J16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172464

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 164    agataaatcaaagacagattt 184
              |||||||||||||||||||||
Sbjct: 109273 agataaatcaaagacagattt 109253
to top
>gb|AC147879.2| Xenopus tropicalis clone CH216-108K9, complete sequence
          Length = 183182

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 81   aaaatttcgggtaaacacatgttct 105
            ||||||| |||||||||||||||||
Sbjct: 2311 aaaatttggggtaaacacatgttct 2335
to top
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence
          Length = 194455

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 107    tgtctattttctcgcattcca 127
              |||||||||||||||||||||
Sbjct: 161596 tgtctattttctcgcattcca 161576
to top
>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence
          Length = 181462

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 107    tgtctattttctcgcattcca 127
              |||||||||||||||||||||
Sbjct: 117522 tgtctattttctcgcattcca 117502
to top
>ref|XM_631612.1| Dictyostelium discoideum AX4 hypothetical protein (DDB0219352),
          partial mRNA
          Length = 978

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 44 ccaagaataattgaatcatta 64
          |||||||||||||||||||||
Sbjct: 55 ccaagaataattgaatcatta 75
to top
>gb|AC024801.2| Caenorhabditis elegans cosmid Y50D7A, complete sequence
          Length = 122450

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    gaattgaaaatttcgggtaaa 95
             |||||||||||||||||||||
Sbjct: 55445 gaattgaaaatttcgggtaaa 55425



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    gaattgaaaatttcgggtaaa 95
             |||||||||||||||||||||
Sbjct: 54823 gaattgaaaatttcgggtaaa 54803



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    gaattgaaaatttcgggtaaa 95
             |||||||||||||||||||||
Sbjct: 54131 gaattgaaaatttcgggtaaa 54111



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    gaattgaaaatttcgggtaaa 95
             |||||||||||||||||||||
Sbjct: 53210 gaattgaaaatttcgggtaaa 53190
to top
>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence
          Length = 171426

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    agatcactcggaaccttctc 465
              ||||||||||||||||||||
Sbjct: 145719 agatcactcggaaccttctc 145738
to top
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088I06, complete sequence
          Length = 187651

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 458   accttctcgtgctgacggttagattcctcacatacccagctcag 501
             |||||||| ||||| || || ||||| || ||||||||||||||
Sbjct: 46196 accttctcatgctggcgctttgattcatcgcatacccagctcag 46239
to top
>gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, complete sequence
          Length = 169596

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   caaagacagatttttcaggt 191
             ||||||||||||||||||||
Sbjct: 61956 caaagacagatttttcaggt 61937
to top
>ref|XM_390772.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10596.1)
            partial mRNA
          Length = 3843

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  gagtaatggcaacgaagaga 162
            ||||||||||||||||||||
Sbjct: 2253 gagtaatggcaacgaagaga 2272
to top
>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene
             region
          Length = 58956

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 458   accttctcgtgctgacggttagattcctcacatacccagctcag 501
             |||||||| ||||| || || ||||| || ||||||||||||||
Sbjct: 34700 accttctcatgctggcgctttgattcatcgcatacccagctcag 34657
to top
>emb|AL034406.1|HS571B2 Human DNA sequence from clone RP4-571B2 on chromosome Xq21.1-21.33
             Contains part of the DACH2 gene for dachsund homolog 2
             (Drosophila), complete sequence
          Length = 146111

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   acagataaatcaaagacaga 181
             ||||||||||||||||||||
Sbjct: 62202 acagataaatcaaagacaga 62221
to top
>emb|AJ586898.1| Platanus acerifolia partial mRNA for polygalacturonase (plaa2 gene)
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  aacaacaacctgagctagtt 304
            ||||||||||||||||||||
Sbjct: 1290 aacaacaacctgagctagtt 1271
to top
>emb|CR847783.6| Zebrafish DNA sequence from clone DKEYP-2C8 in linkage group 5,
             complete sequence
          Length = 184144

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttttatataggaaatatagg 40
             ||||||||||||||||||||
Sbjct: 47846 ttttatataggaaatatagg 47865
to top
>gb|AC092997.6| Homo sapiens 3 BAC RP11-711L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 151059

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   tagtttttggaactcaaatgatat 323
             ||||||||||||||||||| ||||
Sbjct: 36166 tagtttttggaactcaaattatat 36189
to top
>gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, complete sequence
          Length = 171621

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   aaatcaaagacagatttttc 187
             ||||||||||||||||||||
Sbjct: 83009 aaatcaaagacagatttttc 82990
to top
>gb|BC113948.1| Rattus norvegicus cDNA clone MGC:124733 IMAGE:7937870, complete cds
          Length = 6088

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 407  tccaacgctgcctgcgctgc 426
            ||||||||||||||||||||
Sbjct: 4410 tccaacgctgcctgcgctgc 4429
to top
>emb|BX511180.7| Zebrafish DNA sequence from clone CH211-221H1 in linkage group 3,
             complete sequence
          Length = 155448

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   tagtttttggaactcaaatg 319
             ||||||||||||||||||||
Sbjct: 52356 tagtttttggaactcaaatg 52337
to top
>gb|AC153764.3| Loxodonta africana clone VMRC15-169D19, complete sequence
          Length = 147688

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    gaataattgaatcattaatc 67
             ||||||||||||||||||||
Sbjct: 25635 gaataattgaatcattaatc 25616
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 458      accttctcgtgctgacggttagattcctcacatacccagctcag 501
                |||||||| ||||| || || ||||| || ||||||||||||||
Sbjct: 23977707 accttctcatgctggcgctttgattcatcgcatacccagctcag 23977750
to top
>gb|AC011247.10| Homo sapiens BAC clone RP11-541E12 from 2, complete sequence
          Length = 208655

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    taaatcaaagacagattttt 186
              ||||||||||||||||||||
Sbjct: 142685 taaatcaaagacagattttt 142704
to top
>gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, complete sequence
          Length = 180602

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 44     ccaagaataattgaatcattaatctcag 71
              |||| ||||||||| |||||||||||||
Sbjct: 147800 ccaaaaataattgattcattaatctcag 147773
to top
>gb|AC016706.6| Homo sapiens BAC clone RP11-215D12 from 2, complete sequence
          Length = 184121

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     aatctcaggttgaattgaaa 83
              ||||||||||||||||||||
Sbjct: 119480 aatctcaggttgaattgaaa 119499
to top
>gb|AC074019.7| Homo sapiens BAC clone RP11-271M11 from 2, complete sequence
          Length = 127559

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    aatctcaggttgaattgaaa 83
             ||||||||||||||||||||
Sbjct: 23534 aatctcaggttgaattgaaa 23515
to top
>ref|XM_340818.2| PREDICTED: Rattus norvegicus myosin, heavy polypeptide 4, skeletal
            muscle (predicted) (Myh4_predicted), mRNA
          Length = 5817

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 407  tccaacgctgcctgcgctgc 426
            ||||||||||||||||||||
Sbjct: 4327 tccaacgctgcctgcgctgc 4346
to top
>gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete sequence
          Length = 172828

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  aaatcaaagacagatttttc 187
            ||||||||||||||||||||
Sbjct: 3044 aaatcaaagacagatttttc 3025
to top
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1070A12
          Length = 148449

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   gcgctgctgccttggcctgc 439
             ||||||||||||||||||||
Sbjct: 80277 gcgctgctgccttggcctgc 80258
to top
>dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, map 22, complete
              sequences
          Length = 168180

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    tgttctatgtctattttctc 119
              ||||||||||||||||||||
Sbjct: 113974 tgttctatgtctattttctc 113955
to top
>dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBD2
          Length = 79976

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ctaacttttatataggaaat 35
             ||||||||||||||||||||
Sbjct: 63153 ctaacttttatataggaaat 63172



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ctaacttttatataggaaat 35
             ||||||||||||||||||||
Sbjct: 61266 ctaacttttatataggaaat 61285
to top
>emb|Z69793.1|CER03A10 Caenorhabditis elegans Cosmid R03A10, complete sequence
          Length = 40594

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 302  gtttttggaactcaaatgatattc 325
            ||||||||||| ||||||||||||
Sbjct: 4544 gtttttggaacacaaatgatattc 4567
to top
>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    agatcactcggaaccttctc 465
              ||||||||||||||||||||
Sbjct: 141992 agatcactcggaaccttctc 141973
to top
>gb|AF097313.1|AF097313 Xenopus laevis axin mRNA, complete cds
          Length = 2529

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 196 caggatttaatagaagattaagtg 219
           |||||| |||||||||||||||||
Sbjct: 839 caggatctaatagaagattaagtg 862
to top
>emb|BX119994.7| Mouse DNA sequence from clone RP23-272G10 on chromosome X, complete
             sequence
          Length = 174006

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 323   ttcgtcaaccggtcctgtatctct 346
             |||||||||| |||||||||||||
Sbjct: 47549 ttcgtcaacccgtcctgtatctct 47572
to top
>gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complete sequence
          Length = 169272

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 428   gccttggcctgctccagaagatca 451
             ||||||||||| ||||||||||||
Sbjct: 71028 gccttggcctgatccagaagatca 71005


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,527,918
Number of Sequences: 3902068
Number of extensions: 4527918
Number of successful extensions: 97235
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96994
Number of HSP's gapped (non-prelim): 241
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top