Clone Name | rbart08e09 |
---|---|
Clone Library Name | barley_pub |
>gb|AF250935.1|AF250935 Hordeum vulgare germin F (GerF) gene, complete cds Length = 2689 Score = 206 bits (104), Expect = 1e-50 Identities = 119/124 (95%) Strand = Plus / Minus Query: 12 cattgctgctttggcattaacatcacggatctctctatatcagcaacaagggaaaggagc 71 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2664 cattgctgctttgtcattaacatcacggatctctctatatcagcaacaaggcaaaggagc 2605 Query: 72 acctctgcattcccttcattaaacagggaaaacaatcatcaccaacacattctgacatga 131 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2604 acctctgtattccattcattaaacagtgaaaacaatcatcaccaacacattctgacatga 2545 Query: 132 atcc 135 |||| Sbjct: 2544 atcc 2541
>gb|AF250934.1|AF250934 Hordeum vulgare germin B (GerB) gene, complete cds Length = 2798 Score = 196 bits (99), Expect = 1e-47 Identities = 117/123 (95%) Strand = Plus / Minus Query: 12 cattgctgctttggcattaacatcacggatctctctatatcagcaacaagggaaaggagc 71 ||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 2773 cattgctgctttgtcattaacatcacggatctctctatatcagcaaaaaggcaaaggagc 2714 Query: 72 acctctgcattcccttcattaaacagggaaaacaatcatcaccaacacattctgacatga 131 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2713 acctctgtattccattcattaaacagtgaaaacaatcatcaccaacacattctgacatga 2654 Query: 132 atc 134 ||| Sbjct: 2653 atc 2651
>gb|AC095059.3| Homo sapiens BAC clone RP11-428L21 from 4, complete sequence Length = 109586 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tctctatatcagcaacaagg 62 |||||||||||||||||||| Sbjct: 94642 tctctatatcagcaacaagg 94623
>emb|AL662835.11| Mouse DNA sequence from clone RP23-458A23 on chromosome 11, complete sequence Length = 162024 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 gcattcccttcattaaacag 97 |||||||||||||||||||| Sbjct: 49637 gcattcccttcattaaacag 49618
>gb|AC091728.2| Bos taurus clone RP42-99M11, complete sequence Length = 162743 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 attctgacatgaatcccac 138 ||||||||||||||||||| Sbjct: 137478 attctgacatgaatcccac 137496
>gb|AC089992.2| Bos taurus clone RP42-210F11, complete sequence Length = 147922 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 attctgacatgaatcccac 138 ||||||||||||||||||| Sbjct: 6472 attctgacatgaatcccac 6490
>gb|DP000008.1| Bos taurus target 1 genomic scaffold Length = 2072671 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 attctgacatgaatcccac 138 ||||||||||||||||||| Sbjct: 1234645 attctgacatgaatcccac 1234663
>gb|AC156937.4| Mus musculus BAC clone RP23-355I5 from chromosome 8, complete sequence Length = 198479 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 tcatcaccaacacattctg 125 ||||||||||||||||||| Sbjct: 189597 tcatcaccaacacattctg 189615
>gb|AC092031.4| Homo sapiens BAC clone RP11-660M7 from 7, complete sequence Length = 99374 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggaaggcccaacattgctg 19 ||||||||||||||||||| Sbjct: 9514 ggaaggcccaacattgctg 9496
>emb|AL365259.23| Human DNA sequence from clone RP11-624M8 on chromosome 6 Contains part of a novel gene, complete sequence Length = 106607 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 125 gacatgaatcccaccaaaa 143 ||||||||||||||||||| Sbjct: 6567 gacatgaatcccaccaaaa 6549
>emb|CR759830.8| Zebrafish DNA sequence from clone DKEYP-79F12 in linkage group 23, complete sequence Length = 196033 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 116 acacattctgacatgaatcccac 138 |||||| |||||||||||||||| Sbjct: 85611 acacatcctgacatgaatcccac 85589
>gb|AC131053.2| Homo sapiens chromosome 18, clone RP11-348G23, complete sequence Length = 191115 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 agcacctctgcattccctt 87 ||||||||||||||||||| Sbjct: 129349 agcacctctgcattccctt 129331
>gb|U04968.1|CGXPD2 Cricetulus griseus nucleotide excision repair protein gene, exons 3-23 and complete cds Length = 13664 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 atcatcaccaacacattct 124 ||||||||||||||||||| Sbjct: 1846 atcatcaccaacacattct 1828
>gb|AC114401.2| Homo sapiens chromosome 3 clone RP11-85I21, complete sequence Length = 172671 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 ctgacatgaatcccaccaa 141 ||||||||||||||||||| Sbjct: 92734 ctgacatgaatcccaccaa 92716
>gb|AC113169.2| Homo sapiens chromosome 3 clone RP11-322K13, complete sequence Length = 174293 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 ctgacatgaatcccaccaa 141 ||||||||||||||||||| Sbjct: 9977 ctgacatgaatcccaccaa 9959
>emb|BX530074.13| Zebrafish DNA sequence from clone DKEY-266K15 in linkage group 23, complete sequence Length = 124070 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 116 acacattctgacatgaatcccac 138 |||||| |||||||||||||||| Sbjct: 104145 acacatcctgacatgaatcccac 104167
>gb|AC099848.2| Homo sapiens chromosome 18, clone RP11-856F24, complete sequence Length = 132288 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 agcacctctgcattccctt 87 ||||||||||||||||||| Sbjct: 63436 agcacctctgcattccctt 63418
>dbj|AB242159.1| Human astrovirus ORF1a gene for putative serine protease, partial cds, isolate:India/V959/2003 Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB242158.1| Human astrovirus ORF1a gene for putative serine protease, partial cds, isolate:India/V913/2002 Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB211059.1| Human astrovirus 8 orf 1a gene for nonstructural protein, partial cds Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence Length = 195110 Score = 38.2 bits (19), Expect = 6.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 98 ggaaaacaatcatcaccaacacattct 124 |||||||||||| ||| |||||||||| Sbjct: 148052 ggaaaacaatcaacacaaacacattct 148026
>gb|AF095911.2|AF095911 Anolis carolinensis estrogen receptor ligand binding domain mRNA, partial cds Length = 1302 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 53 agcaacaagggaaaggagcacct 75 ||||||||||||| ||||||||| Sbjct: 816 agcaacaagggaatggagcacct 838
>gb|AC018695.6| Homo sapiens BAC clone RP11-568J23 from 16, complete sequence Length = 211001 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 ctctgcattcccttcatta 92 ||||||||||||||||||| Sbjct: 85463 ctctgcattcccttcatta 85445
>gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, complete sequence Length = 182151 Score = 38.2 bits (19), Expect = 6.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 98 ggaaaacaatcatcaccaacacattct 124 |||||||||||| ||| |||||||||| Sbjct: 170537 ggaaaacaatcaacacaaacacattct 170563
>gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, complete sequence Length = 185463 Score = 38.2 bits (19), Expect = 6.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 98 ggaaaacaatcatcaccaacacattct 124 |||||||||||| ||| |||||||||| Sbjct: 145158 ggaaaacaatcaacacaaacacattct 145184
>emb|BX001037.13| Zebrafish DNA sequence from clone DKEY-107I16 in linkage group 6, complete sequence Length = 92347 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 tcccttcattaaacaggga 100 ||||||||||||||||||| Sbjct: 64778 tcccttcattaaacaggga 64796
>gb|AF141381.1|AF141381 Human astrovirus putative serine protease gene, complete cds; putative RNA-dependent RNA polymerase gene, partial cds; and capsid precursor protein gene, complete cds Length = 6815 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 1271 cattaacatcacggatctc 1253
>gb|AC025679.4|AC025679 Homo sapiens chromosome 18, clone RP11-383C19, complete sequence Length = 166937 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 agcacctctgcattccctt 87 ||||||||||||||||||| Sbjct: 30730 agcacctctgcattccctt 30748
>dbj|AK047535.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930086B02 product:unclassifiable, full insert sequence Length = 2917 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 tcatcaccaacacattctg 125 ||||||||||||||||||| Sbjct: 1308 tcatcaccaacacattctg 1290
>gb|AC009068.10|AC009068 Homo sapiens chromosome 16 clone RP11-314K3, complete sequence Length = 160356 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 ctctgcattcccttcatta 92 ||||||||||||||||||| Sbjct: 147148 ctctgcattcccttcatta 147130
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 aaaacaatcatcaccaaca 118 ||||||||||||||||||| Sbjct: 22556690 aaaacaatcatcaccaaca 22556672
>gb|AC133065.3| Homo sapiens chromosome 16 clone RP11-876N24, complete sequence Length = 142215 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 aaacagggaaaacaatcat 110 ||||||||||||||||||| Sbjct: 38480 aaacagggaaaacaatcat 38462
>gb|AC080014.13| Homo sapiens 3 BAC RP11-301G23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163111 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 gcattcccttcattaaaca 96 ||||||||||||||||||| Sbjct: 92691 gcattcccttcattaaaca 92709
>dbj|AB194280.1| Human astrovirus type 8 ORF1a gene for putative serine protease, partial cds, isolate: V1347 Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB191789.1| Human astrovirus type 8 ORF1a gene for putative serine protease, partial cds Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB126674.1| Human astrovirus type 8 orf1a gene for non-structural protein, partial cds, strain:I/V834/2002 Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB126673.1| Human astrovirus type 8 orf1a gene for non-structural protein, partial cds, strain:I/V814/2002 Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB126672.1| Human astrovirus type 8 orf1a gene for non-structural protein, partial cds, strain:I/V813/2002 Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB126671.1| Human astrovirus type 8 orf1a gene for non-structural protein, partial cds, strain:I/V782/2002 Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB126670.1| Human astrovirus type 8 orf1a gene for non-structural protein, partial cds, strain:I/V770/2002 Length = 242 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>dbj|AB116554.1| Human astrovirus type 8 orf 1a gene for non-structural protein, partial cds Length = 289 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 90 cattaacatcacggatctc 72
>gb|AY962542.1| Human astrovirus isolate 5-158 Orf1a gene, partial cds Length = 251 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cattaacatcacggatctc 44 ||||||||||||||||||| Sbjct: 52 cattaacatcacggatctc 34
>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1331F11 Length = 132205 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 aaaacaatcatcaccaaca 118 ||||||||||||||||||| Sbjct: 71891 aaaacaatcatcaccaaca 71873
>emb|CT573085.6| Mouse DNA sequence from clone RP23-436A20 on chromosome 13, complete sequence Length = 186441 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 caacattgctgctttggca 27 ||||||||||||||||||| Sbjct: 54934 caacattgctgctttggca 54916
>emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chromosome 2, complete sequence Length = 208765 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 caacattgctgctttggca 27 ||||||||||||||||||| Sbjct: 130593 caacattgctgctttggca 130611
>emb|BX322585.4| Mouse DNA sequence from clone RP23-286C17 on chromosome 2, complete sequence Length = 13008 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 ctgacatgaatcccaccaa 141 ||||||||||||||||||| Sbjct: 8870 ctgacatgaatcccaccaa 8852
>emb|AL935173.9| Zebrafish DNA sequence from clone CH211-196D9, complete sequence Length = 205213 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 ttcccttcattaaacaggg 99 ||||||||||||||||||| Sbjct: 43153 ttcccttcattaaacaggg 43135
>gb|AC126054.5| Mus musculus BAC clone RP23-298O13 from 8, complete sequence Length = 233117 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 tcatcaccaacacattctg 125 ||||||||||||||||||| Sbjct: 158137 tcatcaccaacacattctg 158119 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,451,241 Number of Sequences: 3902068 Number of extensions: 1451241 Number of successful extensions: 102699 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102607 Number of HSP's gapped (non-prelim): 92 length of query: 143 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 122 effective length of database: 17,151,101,840 effective search space: 2092434424480 effective search space used: 2092434424480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)