ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart08e07 |
|---|---|
| Clone Library Name | barley_pub |
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 67.4 bits (163), Expect = 8e-12 Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 3/63 (4%) Frame = -2 Query: 398 LLLKQPGFKGS--AVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLPDPM 228 L+LK P + AV+YK+ R+KL GY IVG IGDQWSD+LG G +RTFKLP+P+ Sbjct: 191 LILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPL 250 Query: 227 YYI 219 YYI Sbjct: 251 YYI 253
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 66.6 bits (161), Expect = 1e-11 Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 2/62 (3%) Frame = -2 Query: 398 LLLKQPGF-KGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLPDPMY 225 L+LK P +A++YKS R+ L GY IVG IGDQWSD+LG G +RTFKLP+PMY Sbjct: 192 LILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMY 251 Query: 224 YI 219 YI Sbjct: 252 YI 253
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 65.5 bits (158), Expect = 3e-11 Identities = 29/50 (58%), Positives = 37/50 (74%) Frame = -2 Query: 368 SAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYYI 219 +A TYKS R + + G+ IVGN GDQWSD+LG+ R+FKLP+PMYYI Sbjct: 205 TATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 63.5 bits (153), Expect = 1e-10 Identities = 32/61 (52%), Positives = 41/61 (67%) Frame = -2 Query: 401 NLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYY 222 +L+LK G K + V YKS R L GY IVGNIGDQW+D++ G R FKLP+P+YY Sbjct: 209 HLILKPNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYY 267 Query: 221 I 219 + Sbjct: 268 V 268
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 61.2 bits (147), Expect = 6e-10 Identities = 31/61 (50%), Positives = 40/61 (65%) Frame = -2 Query: 401 NLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYY 222 +L+LK G V YKS R+ L GY IVGNIGDQW+D++ G R FKLP+P+YY Sbjct: 204 HLILKPNGSNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYY 262 Query: 221 I 219 + Sbjct: 263 V 263
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 59.7 bits (143), Expect = 2e-09 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 3/59 (5%) Frame = -2 Query: 398 LLLKQPGFKGS--AVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLPDP 231 L+LK P + AV+YK+ R+KL GY IVG IGDQWSD+LG G +RTFKLP+P Sbjct: 188 LILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246
>DLDH_SHIFL (P0A9P3) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOLI (P0A9P0) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOL6 (P0A9P1) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECO57 (P0A9P2) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)| Length = 212 Score = 30.8 bits (68), Expect = 0.81 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 302 NIGDQWSDILGAPEGARTFKLPDPMY 225 +IGD WS+ILG+ R F+L D Y Sbjct: 38 SIGDAWSEILGSMSKERAFELLDAFY 63
>FLGH_BRUSU (Q8FXC2) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 186 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 320 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASINTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUME (Q8YB19) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 186 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 320 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUAB (Q579T6) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 186 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 320 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>PRS23_HUMAN (O95084) Serine protease 23 precursor (EC 3.4.21.-) (Putative| secreted protein ZSIG13) Length = 383 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -2 Query: 386 QPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYY 222 QPG GS V + +RQ+ + +I G QW D+ G+P+ P+ Y Sbjct: 312 QPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKY 366
>IDI2_RICFE (Q4ULD7) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 345 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/75 (22%), Positives = 34/75 (45%) Frame = +3 Query: 114 NWGLII*RNMHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLWRAEDVAPLV 293 NWG+ S++++RE++G +P A GGL + G + ++ Sbjct: 251 NWGI------PTLDSLKMVREVSGDIPIIASGGLKSGIDGAKAIRMGANIFGLAGQFLKA 304 Query: 294 ADVTDDDIPGVLQLL 338 AD ++ + +QL+ Sbjct: 305 ADTSESLLSEEVQLI 319
>RL16_LISMO (Q927L4) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISMF (Q71WF3) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISIN (Q7ANU4) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) Length = 1184 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -1 Query: 261 GCPHLQAARPHVLHRLGRLW-LGRACCH 181 GCP + RP +H L +L L + CCH Sbjct: 924 GCPAADSQRPSTVHVLSQLLRLRQCCCH 951
>CRGM3_CYPCA (P28022) Gamma crystallin M3 (Gamma-M3)| Length = 173 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -2 Query: 398 LLLKQPGFKGSAVTYKSGERQKLQDAGY 315 L+ +QP ++G V ++ GE + +D GY Sbjct: 131 LMYEQPHYRGRIVYFRPGEYRSFRDMGY 158
>MURB_RALSO (Q8XWC4) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 342 Score = 27.7 bits (60), Expect = 6.8 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +3 Query: 138 NMHITKSIE---LIREINGSMPGRAR-GGLADVVHGVGQLEGAGTLWRAEDVAPLVADVT 305 N+ +T+ + L+ EI G GRA G A VH V GAG W LVA Sbjct: 56 NIVLTRDFDGLVLLMEIPGVQVGRATLDGRA--VHTV--TAGAGESWHG-----LVARTV 106 Query: 306 DDDIPGVLQLLPLAGLVG 359 D +PG+ L + G VG Sbjct: 107 ADGLPGLENLALIPGTVG 124
>CTR9_YEAST (P89105) Protein CTR9| Length = 1077 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 246 QAARPHVLHRLGRLWLGRA 190 + RPH+L+ LGR W RA Sbjct: 764 EKTRPHILNLLGRAWYARA 782
>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1133 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 226 YMGSGSLKVRAPSGAPRMSLHWSPMLPTMTY 318 Y G+G ++ AP GAP S++ S P T+ Sbjct: 890 YQGAGPMQAMAPQGAPTKSINISDYSPYGTH 920
>LPIN1_MOUSE (Q91ZP3) Lipin-1 (Fatty liver dystrophy protein)| Length = 924 Score = 27.3 bits (59), Expect = 8.9 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 10/110 (9%) Frame = +3 Query: 51 TRLIHSSN*SQALNNGNEPSNNWGLII*RNMHITKSIELIREINGSMPGRARGGLADVV- 227 TR+ H S+ S + +PS + L + N+ K++ L E S+ + + G DVV Sbjct: 626 TRIKHESSSSDEEHAAAKPSGSSHLSLLSNVSYKKTLRLTSEQLKSL--KLKNGPNDVVF 683 Query: 228 ------HGVGQLEGAGTLWRAED---VAPLVADVTDDDIPGVLQLLPLAG 350 G + EG LW +D ++ + +T D G +LP G Sbjct: 684 SVTTQYQGTCRCEGTIYLWNWDDKVIISDIDGTITRSDTLG--HILPTLG 731
>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN| domain-containing protein 10) Length = 725 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +2 Query: 128 YLTKHAYN*EHRAYSRNQWQHARPSQRRPSRCSTWGRAA*RCGHPLARR 274 +L HA + + R+ S R S RRP CS G+A R H +A R Sbjct: 439 HLRIHARDKDRRS-SEGSGSRRRDSDRRPFVCSDCGKAFRRSEHLVAHR 486
>LPIN1_HUMAN (Q14693) Lipin-1| Length = 890 Score = 27.3 bits (59), Expect = 8.9 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 10/110 (9%) Frame = +3 Query: 51 TRLIHSSN*SQALNNGNEPSNNWGLII*RNMHITKSIELIREINGSMPGRARGGLADVV- 227 TR+ H S+ S +PSN L + N+ K++ L E S+ + + G DVV Sbjct: 592 TRVKHESSSSDEERAAAKPSNAGHLPLLPNVSYKKTLRLTSEQLKSL--KLKNGPNDVVF 649 Query: 228 ------HGVGQLEGAGTLWRAED---VAPLVADVTDDDIPGVLQLLPLAG 350 G + EG LW +D ++ + +T D G +LP G Sbjct: 650 SVTTQYQGTCRCEGTIYLWNWDDKVIISDIDGTITRSDTLG--HILPTLG 697 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,245,455 Number of Sequences: 219361 Number of extensions: 989494 Number of successful extensions: 2555 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2514 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2550 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
