Clone Name | rbart08e06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence Length = 149145 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctctgtgaacaaatcaagca 106 |||||||||||||||||||| Sbjct: 59870 ctctgtgaacaaatcaagca 59889
>gb|AC149137.3| Xenopus tropicalis clone CH216-3L19, complete sequence Length = 155697 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 ggccaaacaatcaaactgcaacaa 72 |||||||||||||||||| ||||| Sbjct: 121339 ggccaaacaatcaaactgtaacaa 121316
>dbj|AP000760.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-779L16, complete sequence Length = 177490 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cactcacaaatattgtacac 48 |||||||||||||||||||| Sbjct: 75205 cactcacaaatattgtacac 75186
>dbj|AP002378.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-351D3, complete sequence Length = 177432 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cactcacaaatattgtacac 48 |||||||||||||||||||| Sbjct: 173621 cactcacaaatattgtacac 173602
>emb|CR848788.7| Zebrafish DNA sequence from clone DKEY-283B15 in linkage group 16, complete sequence Length = 189441 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 ctctgtgaacaaatcaagc 105 ||||||||||||||||||| Sbjct: 148170 ctctgtgaacaaatcaagc 148152
>gb|AC134441.4| Mus musculus BAC clone RP24-544J6 from chromosome 5, complete sequence Length = 177565 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 tcactccttggaagcttca 154 ||||||||||||||||||| Sbjct: 5261 tcactccttggaagcttca 5279
>gb|AC131730.2| Mus musculus BAC clone RP23-115A5 from chromosome 5, complete sequence Length = 218708 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 tcactccttggaagcttca 154 ||||||||||||||||||| Sbjct: 189646 tcactccttggaagcttca 189664
>emb|AL845362.4| Zebrafish DNA sequence from clone CH211-142H2 in linkage group 2 Contains a putative novel gene, a novel gene similar to PTF1 (pancreas transcription factor 1, subunit p48), a novel gene similar to DLGAP1 (discs, large (Drosophila) homolog-associated protein 1) and two CpG islands, complete sequence Length = 161465 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 tgaacaaatcaagcactct 110 ||||||||||||||||||| Sbjct: 55616 tgaacaaatcaagcactct 55634
>emb|BX927113.12| Zebrafish DNA sequence from clone DKEY-5N1 in linkage group 18, complete sequence Length = 159070 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 aacaatcaaactgcaacaa 72 ||||||||||||||||||| Sbjct: 87438 aacaatcaaactgcaacaa 87456
>gb|AF346304.1|AF346304 Mus musculus epithelial sodium channel subunit alpha (Scnn1a) gene, partial cds Length = 3250 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 tgaatcacactcacaaata 40 ||||||||||||||||||| Sbjct: 171 tgaatcacactcacaaata 153
>gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosome 14, complete sequence Length = 215330 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 atttgtcactccttggaag 149 ||||||||||||||||||| Sbjct: 37724 atttgtcactccttggaag 37742
>dbj|AK035359.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530023M19 product:unclassifiable, full insert sequence Length = 2400 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 136 tcactccttggaagcttca 154 ||||||||||||||||||| Sbjct: 1837 tcactccttggaagcttca 1819
>gb|AC154014.4| Mus musculus 6 BAC RP24-409C18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 161963 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 aacaatcaaactgcaacaa 72 ||||||||||||||||||| Sbjct: 14027 aacaatcaaactgcaacaa 14045
>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5, complete sequence Length = 160041 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 aaacaatcaaactgcaaca 71 ||||||||||||||||||| Sbjct: 144119 aaacaatcaaactgcaaca 144101
>gb|AF228802.1|AF228802 Mus musculus alpha ENaC (Scnn1a) gene, partial cds Length = 3228 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 tgaatcacactcacaaata 40 ||||||||||||||||||| Sbjct: 154 tgaatcacactcacaaata 136
>emb|AL935065.7| Zebrafish DNA sequence from clone CH211-69I14 in linkage group 5, complete sequence Length = 167740 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaacaatcaaactgcaaca 71 ||||||||||||||||||| Sbjct: 113724 aaacaatcaaactgcaaca 113742
>gb|AC163271.4| Mus musculus chromosome 7, clone RP24-353E13, complete sequence Length = 131940 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 140 tccttggaagcttcagcac 158 ||||||||||||||||||| Sbjct: 27903 tccttggaagcttcagcac 27885
>gb|AC154015.3| Mus musculus 6 BAC RP24-194J12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151119 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 aacaatcaaactgcaacaa 72 ||||||||||||||||||| Sbjct: 126962 aacaatcaaactgcaacaa 126980
>gb|AC134330.3| Mus musculus BAC clone RP24-311K19 from 7, complete sequence Length = 142053 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 140 tccttggaagcttcagcac 158 ||||||||||||||||||| Sbjct: 43191 tccttggaagcttcagcac 43173
>gb|AC140324.3| Mus musculus BAC clone RP23-402K14 from 6, complete sequence Length = 200190 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 tgaatcacactcacaaata 40 ||||||||||||||||||| Sbjct: 64183 tgaatcacactcacaaata 64201
>emb|CT025563.11| Mouse DNA sequence from clone RP23-472D20 on chromosome 14, complete sequence Length = 174286 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 atttgtcactccttggaag 149 ||||||||||||||||||| Sbjct: 172134 atttgtcactccttggaag 172152 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,329,540 Number of Sequences: 3902068 Number of extensions: 1329540 Number of successful extensions: 93274 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93236 Number of HSP's gapped (non-prelim): 38 length of query: 186 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 164 effective length of database: 17,147,199,772 effective search space: 2812140762608 effective search space used: 2812140762608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)