ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome... 40 2.3
2gb|AC149137.3| Xenopus tropicalis clone CH216-3L19, complete seq... 40 2.3
3dbj|AP000760.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 2.3
4dbj|AP002378.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 2.3
5emb|CR848788.7| Zebrafish DNA sequence from clone DKEY-283B15 in... 38 9.2
6gb|AC134441.4| Mus musculus BAC clone RP24-544J6 from chromosome... 38 9.2
7gb|AC131730.2| Mus musculus BAC clone RP23-115A5 from chromosome... 38 9.2
8emb|AL845362.4| Zebrafish DNA sequence from clone CH211-142H2 in... 38 9.2
9emb|BX927113.12| Zebrafish DNA sequence from clone DKEY-5N1 in l... 38 9.2
10gb|AF346304.1|AF346304 Mus musculus epithelial sodium channel su... 38 9.2
11gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosom... 38 9.2
12dbj|AK035359.1| Mus musculus adult male urinary bladder cDNA, RI... 38 9.2
13gb|AC154014.4| Mus musculus 6 BAC RP24-409C18 (Roswell Park Canc... 38 9.2
14emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in... 38 9.2
15gb|AF228802.1|AF228802 Mus musculus alpha ENaC (Scnn1a) gene, pa... 38 9.2
16emb|AL935065.7| Zebrafish DNA sequence from clone CH211-69I14 in... 38 9.2
17gb|AC163271.4| Mus musculus chromosome 7, clone RP24-353E13, com... 38 9.2
18gb|AC154015.3| Mus musculus 6 BAC RP24-194J12 (Roswell Park Canc... 38 9.2
19gb|AC134330.3| Mus musculus BAC clone RP24-311K19 from 7, comple... 38 9.2
20gb|AC140324.3| Mus musculus BAC clone RP23-402K14 from 6, comple... 38 9.2
21emb|CT025563.11| Mouse DNA sequence from clone RP23-472D20 on ch... 38 9.2

>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence
          Length = 149145

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    ctctgtgaacaaatcaagca 106
             ||||||||||||||||||||
Sbjct: 59870 ctctgtgaacaaatcaagca 59889



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>gb|AC149137.3| Xenopus tropicalis clone CH216-3L19, complete sequence
          Length = 155697

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 49     ggccaaacaatcaaactgcaacaa 72
              |||||||||||||||||| |||||
Sbjct: 121339 ggccaaacaatcaaactgtaacaa 121316



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>dbj|AP000760.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-779L16, complete
             sequence
          Length = 177490

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    cactcacaaatattgtacac 48
             ||||||||||||||||||||
Sbjct: 75205 cactcacaaatattgtacac 75186



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>dbj|AP002378.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-351D3, complete
              sequence
          Length = 177432

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     cactcacaaatattgtacac 48
              ||||||||||||||||||||
Sbjct: 173621 cactcacaaatattgtacac 173602



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>emb|CR848788.7| Zebrafish DNA sequence from clone DKEY-283B15 in linkage group 16,
              complete sequence
          Length = 189441

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 87     ctctgtgaacaaatcaagc 105
              |||||||||||||||||||
Sbjct: 148170 ctctgtgaacaaatcaagc 148152



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>gb|AC134441.4| Mus musculus BAC clone RP24-544J6 from chromosome 5, complete
            sequence
          Length = 177565

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 136  tcactccttggaagcttca 154
            |||||||||||||||||||
Sbjct: 5261 tcactccttggaagcttca 5279



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>gb|AC131730.2| Mus musculus BAC clone RP23-115A5 from chromosome 5, complete sequence
          Length = 218708

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 136    tcactccttggaagcttca 154
              |||||||||||||||||||
Sbjct: 189646 tcactccttggaagcttca 189664



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>emb|AL845362.4| Zebrafish DNA sequence from clone CH211-142H2 in linkage group 2
             Contains a putative novel gene, a novel gene similar to
             PTF1 (pancreas transcription factor 1, subunit p48), a
             novel gene similar to DLGAP1 (discs, large (Drosophila)
             homolog-associated protein 1) and two CpG islands,
             complete sequence
          Length = 161465

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 92    tgaacaaatcaagcactct 110
             |||||||||||||||||||
Sbjct: 55616 tgaacaaatcaagcactct 55634



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>emb|BX927113.12| Zebrafish DNA sequence from clone DKEY-5N1 in linkage group 18,
             complete sequence
          Length = 159070

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    aacaatcaaactgcaacaa 72
             |||||||||||||||||||
Sbjct: 87438 aacaatcaaactgcaacaa 87456



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>gb|AF346304.1|AF346304 Mus musculus epithelial sodium channel subunit alpha (Scnn1a) gene,
           partial cds
          Length = 3250

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  tgaatcacactcacaaata 40
           |||||||||||||||||||
Sbjct: 171 tgaatcacactcacaaata 153



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>gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosome 14, complete
             sequence
          Length = 215330

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   atttgtcactccttggaag 149
             |||||||||||||||||||
Sbjct: 37724 atttgtcactccttggaag 37742



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>dbj|AK035359.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530023M19
            product:unclassifiable, full insert sequence
          Length = 2400

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 136  tcactccttggaagcttca 154
            |||||||||||||||||||
Sbjct: 1837 tcactccttggaagcttca 1819



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>gb|AC154014.4| Mus musculus 6 BAC RP24-409C18 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 161963

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    aacaatcaaactgcaacaa 72
             |||||||||||||||||||
Sbjct: 14027 aacaatcaaactgcaacaa 14045



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>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5,
              complete sequence
          Length = 160041

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     aaacaatcaaactgcaaca 71
              |||||||||||||||||||
Sbjct: 144119 aaacaatcaaactgcaaca 144101



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>gb|AF228802.1|AF228802 Mus musculus alpha ENaC (Scnn1a) gene, partial cds
          Length = 3228

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  tgaatcacactcacaaata 40
           |||||||||||||||||||
Sbjct: 154 tgaatcacactcacaaata 136



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>emb|AL935065.7| Zebrafish DNA sequence from clone CH211-69I14 in linkage group 5,
              complete sequence
          Length = 167740

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     aaacaatcaaactgcaaca 71
              |||||||||||||||||||
Sbjct: 113724 aaacaatcaaactgcaaca 113742



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>gb|AC163271.4| Mus musculus chromosome 7, clone RP24-353E13, complete sequence
          Length = 131940

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 140   tccttggaagcttcagcac 158
             |||||||||||||||||||
Sbjct: 27903 tccttggaagcttcagcac 27885



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>gb|AC154015.3| Mus musculus 6 BAC RP24-194J12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 151119

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     aacaatcaaactgcaacaa 72
              |||||||||||||||||||
Sbjct: 126962 aacaatcaaactgcaacaa 126980



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>gb|AC134330.3| Mus musculus BAC clone RP24-311K19 from 7, complete sequence
          Length = 142053

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 140   tccttggaagcttcagcac 158
             |||||||||||||||||||
Sbjct: 43191 tccttggaagcttcagcac 43173



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>gb|AC140324.3| Mus musculus BAC clone RP23-402K14 from 6, complete sequence
          Length = 200190

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tgaatcacactcacaaata 40
             |||||||||||||||||||
Sbjct: 64183 tgaatcacactcacaaata 64201



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>emb|CT025563.11| Mouse DNA sequence from clone RP23-472D20 on chromosome 14, complete
              sequence
          Length = 174286

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 131    atttgtcactccttggaag 149
              |||||||||||||||||||
Sbjct: 172134 atttgtcactccttggaag 172152


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,329,540
Number of Sequences: 3902068
Number of extensions: 1329540
Number of successful extensions: 93274
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93236
Number of HSP's gapped (non-prelim): 38
length of query: 186
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 164
effective length of database: 17,147,199,772
effective search space: 2812140762608
effective search space used: 2812140762608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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