ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart08e05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock domain protein 3, complete cds Length = 1025 Score = 418 bits (211), Expect = e-114 Identities = 305/333 (91%), Gaps = 5/333 (1%) Strand = Plus / Minus Query: 5 gacaccaaacttgacttcgataacttagttcatccaatacataagagatagatctgtgtc 64 ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| Sbjct: 1008 gacaccaaacttgacttcgataacttagtccatccaacacata---gatagatctgtgtc 952 Query: 65 ctcatcacagagacacaacaaaataacttggatctttaacggacaaaccaccagcaattc 124 ||||||||||||| ||| |||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 951 ctcatcacagagagacagcaaaataacttggatctt-aacgaacacaccaccagcaattc 893 Query: 125 ttctggatccaagctcgcatggagcagcacggggaaacgctacggcgactaatactagta 184 ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 892 ttctggaaccaagctcgcatcgagcagcagggggaaacgctacggcgactaatactagta 833 Query: 185 ctgataggtatagg-tatgacttgatgcaggatcaggagataggaaaaggagcgaagggg 243 |||||||||||||| ||||||||| ||||| |||||||| |||| |||||||| | || Sbjct: 832 ctgataggtatagggtatgacttgctgcagaatcaggaggtaggtaaaggagcaagggta 773 Query: 244 aagggggcactcagatctgacgggctgcgccgcttagtgggccttgttggggcactcgcg 303 || ||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||| Sbjct: 772 aacggggcactcagatctgaagagctgtgccgcctagtgggccttgttggggcactcgcg 713 Query: 304 ggagaagtggccagactcgccgcaggagaagca 336 |||||||||||| |||||||||||||||||||| Sbjct: 712 ggagaagtggccggactcgccgcaggagaagca 680 Score = 79.8 bits (40), Expect = 7e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||||||||||||||||||||||||||||||||||||||| Sbjct: 615 tgggggcagtccctggagatgtggccctcctcgccgcact 576 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||||||||||||||||||||||||| || |||||||||| Sbjct: 501 tgggggcagtccctggagatgtggccatcttcgccgcact 462
>dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds Length = 1029 Score = 387 bits (195), Expect = e-104 Identities = 291/320 (90%), Gaps = 6/320 (1%) Strand = Plus / Minus Query: 20 ttcgataacttagttcatccaatacataagagatagatctgtgtcctcatcacagagaca 79 |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| | Sbjct: 1008 ttcgataacttagtccatccaacacata---gatagatctgtgtcctcatcacagagaga 952 Query: 80 caacaaaataacttggatcttta--acggacaaaccaccagcaattcttctggatccaag 137 ||||||||||||||||||||| | ||| ||| ||||||||||||||||||||| ||||| Sbjct: 951 caacaaaataacttggatcttaacgacgaacacaccaccagcaattcttctggaaccaag 892 Query: 138 ctcgcatggagcagcacggggaaacgctacggcgactaatactagtactgataggtatag 197 |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 891 ctcggatcgagcagcagggggaaacgctacggcgactaatactagtactgataggtatag 832 Query: 198 g-tatgacttgatgcaggatcaggagataggaaaaggagcgaaggggaagggggcactca 256 | ||||||||| ||||| |||||||| |||| |||||||||| || || |||||||||| Sbjct: 831 ggtatgacttgctgcagaatcaggaggtaggtaaaggagcgagggtaaacggggcactca 772 Query: 257 gatctgacgggctgcgccgcttagtgggccttgttggggcactcgcgggagaagtggcca 316 ||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 771 gatctgaagagctgtgccgcctagtgggccttgttggggcactcgcgggagaagtggccg 712 Query: 317 gactcgccgcaggagaagca 336 |||||||||||||||||||| Sbjct: 711 gactcgccgcaggagaagca 692 Score = 79.8 bits (40), Expect = 7e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||||||||||||||||||||||||||||||||||||||| Sbjct: 615 tgggggcagtccctggagatgtggccctcctcgccgcact 576 Score = 79.8 bits (40), Expect = 7e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||||||||||||||||||||||||||||||||||||||| Sbjct: 501 tgggggcagtccctggagatgtggccctcctcgccgcact 462
>dbj|AB161682.1| Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds Length = 990 Score = 216 bits (109), Expect = 5e-53 Identities = 157/173 (90%) Strand = Plus / Minus Query: 164 ctacggcgactaatactagtactgataggtataggtatgacttgatgcaggatcaggaga 223 |||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||| | Sbjct: 789 ctacggcgacatatactaatactgataggtataggtatgacttgctgcagagtcaggcgg 730 Query: 224 taggaaaaggagcgaaggggaagggggcactcagatctgacgggctgcgccgcttagtgg 283 |||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||| | Sbjct: 729 taggaaaaggagcgaaggggaacggggaactcagatctgacgggcagcgccgcctagttg 670 Query: 284 gccttgttggggcactcgcgggagaagtggccagactcgccgcaggagaagca 336 | |||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 669 gtcttgttggggcactcgcgcgagaagtggccggactcgccgcaggagaagca 617 Score = 79.8 bits (40), Expect = 7e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||||||||||||||||||||||||||||||||||||||| Sbjct: 546 tgggggcagtccctggagatgtggccctcctcgccgcact 507 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 112 ccaccagcaattcttctggatccaagctcgcat 144 |||||| |||| |||||||| |||||||||||| Sbjct: 857 ccaccaacaatacttctggaaccaagctcgcat 825
>dbj|AB158409.1| Triticum aestivum GRP mRNA for putative glycine-rich protein, complete cds Length = 996 Score = 216 bits (109), Expect = 5e-53 Identities = 157/173 (90%) Strand = Plus / Minus Query: 164 ctacggcgactaatactagtactgataggtataggtatgacttgatgcaggatcaggaga 223 |||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||| | Sbjct: 789 ctacggcgacatatactaatactgataggtataggtatgacttgctgcagagtcaggcgg 730 Query: 224 taggaaaaggagcgaaggggaagggggcactcagatctgacgggctgcgccgcttagtgg 283 |||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||| | Sbjct: 729 taggaaaaggagcgaaggggaacggggaactcagatctgacgggcagcgccgcctagttg 670 Query: 284 gccttgttggggcactcgcgggagaagtggccagactcgccgcaggagaagca 336 | |||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 669 gtcttgttggggcactcgcgcgagaagtggccggactcgccgcaggagaagca 617 Score = 79.8 bits (40), Expect = 7e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||||||||||||||||||||||||||||||||||||||| Sbjct: 546 tgggggcagtccctggagatgtggccctcctcgccgcact 507 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 112 ccaccagcaattcttctggatccaagctcgcat 144 |||||| |||| |||||||| |||||||||||| Sbjct: 857 ccaccaacaatacttctggaaccaagctcgcat 825
>emb|AJ234726.1|HVU234726 Hordeum vulgare genomic DNA fragment; clone MWG2034.rev Length = 312 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 150 agcacggggaaacgctacggcgactaatactagtactgataggtataggtatgacttg 207 ||||||||| ||| |||||||||| |||||| |||||||||||||| |||||||||| Sbjct: 58 agcacggggtaacactacggcgacatatactaatactgataggtatatgtatgacttg 1
>ref|XM_955512.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial mRNA Length = 552 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 290 ttggggcactcgcgggagaagtggccagactcgccgcag 328 |||||||| || ||||||||||||||||||||||||||| Sbjct: 473 ttggggcagtcacgggagaagtggccagactcgccgcag 435
>ref|XM_331314.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial mRNA Length = 552 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 290 ttggggcactcgcgggagaagtggccagactcgccgcag 328 |||||||| || ||||||||||||||||||||||||||| Sbjct: 473 ttggggcagtcacgggagaagtggccagactcgccgcag 435
>ref|XM_479920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||||||| |||||||||||||||||||||| Sbjct: 544 tgggagcagtccctggccatgtggccctcctcgccgcact 505
>ref|XM_507115.1| PREDICTED Oryza sativa (japonica cultivar-group), P0582D05.112 mRNA Length = 984 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||||||| |||||||||||||||||||||| Sbjct: 544 tgggagcagtccctggccatgtggccctcctcgccgcact 505
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||||||| |||||||||||||||||||||| Sbjct: 1639117 tgggagcagtccctggccatgtggccctcctcgccgcact 1639156
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||||||| |||||||||||||||||||||| Sbjct: 38617 tgggagcagtccctggccatgtggccctcctcgccgcact 38656
>dbj|AK101577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050L02, full insert sequence Length = 984 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||||||| |||||||||||||||||||||| Sbjct: 544 tgggagcagtccctggccatgtggccctcctcgccgcact 505
>dbj|AK070034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A08, full insert sequence Length = 963 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||||||| |||||||||||||||||||||| Sbjct: 544 tgggagcagtccctggccatgtggccctcctcgccgcact 505
>ref|XM_390462.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10286.1) partial mRNA Length = 558 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 290 ttggggcactcgcgggagaagtggccagactcgccgcag 328 |||||||| || |||||| |||||||||||||||||||| Sbjct: 479 ttggggcagtcacgggagtagtggccagactcgccgcag 441
>gb|BT016623.1| Zea mays clone Contig456 mRNA sequence Length = 1039 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Minus Query: 427 ggggcagtccctggagatgtggccctcctcgccgca 462 ||||||||| | ||||||||||||||||| |||||| Sbjct: 673 ggggcagtcgcgggagatgtggccctcctggccgca 638 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||||| | |||||||||||||||||||||| Sbjct: 582 tgggagcagtcccttgccatgtggccctcctcgccgcact 543 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 287 ttgttggggcactcgcgggagaagtggcc 315 ||||||||||| |||||||||| |||||| Sbjct: 678 ttgttggggcagtcgcgggagatgtggcc 650
>gb|AY104445.1| Zea mays PCO063886 mRNA sequence Length = 540 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Minus Query: 427 ggggcagtccctggagatgtggccctcctcgccgca 462 ||||||||| | ||||||||||||||||| |||||| Sbjct: 186 ggggcagtcgcgggagatgtggccctcctggccgca 151 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||||| | |||||||||||||||||||||| Sbjct: 95 tgggagcagtcccttgccatgtggccctcctcgccgcact 56 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 287 ttgttggggcactcgcgggagaagtggcc 315 ||||||||||| |||||||||| |||||| Sbjct: 191 ttgttggggcagtcgcgggagatgtggcc 163
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 430 gcagtccctggagatgtggccctcctcgccgcact 464 ||||||||||| |||||||||||||||| ||||| Sbjct: 12354753 gcagtccctggccatgtggccctcctcgctgcact 12354787
>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0011P19 Length = 150811 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 430 gcagtccctggagatgtggccctcctcgccgcact 464 ||||||||||| |||||||||||||||| ||||| Sbjct: 40398 gcagtccctggccatgtggccctcctcgctgcact 40432
>gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequence Length = 125364 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 tctgtgtcctcatcacagagac 78 |||||||||||||||||||||| Sbjct: 77211 tctgtgtcctcatcacagagac 77232
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 439 ggagatgtggccctcctcgccgcact 464 ||||| |||||||||||||||||||| Sbjct: 21441671 ggagaggtggccctcctcgccgcact 21441696
>gb|AC008207.3|AC008207 Drosophila melanogaster, chromosome 3R, region 96C-96D, BAC clone BACR17E12, complete sequence Length = 184887 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 tcgataacttagttcatccaat 42 |||||||||||||||||||||| Sbjct: 119356 tcgataacttagttcatccaat 119335
>gb|AC008208.5|AC008208 Drosophila melanogaster, chromosome 3R, region 96D-96D, BAC clone BACR06L08, complete sequence Length = 170220 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 tcgataacttagttcatccaat 42 |||||||||||||||||||||| Sbjct: 55298 tcgataacttagttcatccaat 55277
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0489D11 Length = 150757 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 439 ggagatgtggccctcctcgccgcact 464 ||||| |||||||||||||||||||| Sbjct: 3281 ggagaggtggccctcctcgccgcact 3306
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1210_A07 Length = 131394 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 439 ggagatgtggccctcctcgccgcact 464 ||||| |||||||||||||||||||| Sbjct: 58776 ggagaggtggccctcctcgccgcact 58801
>gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89 of 118 of the complete sequence Length = 307443 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 tcgataacttagttcatccaat 42 |||||||||||||||||||||| Sbjct: 59034 tcgataacttagttcatccaat 59013
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 tctgtgtcctcatcacagagac 78 |||||||||||||||||||||| Sbjct: 630553 tctgtgtcctcatcacagagac 630574
>gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 map 17, complete sequence Length = 236365 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gatctgtgtcctcatcacaga 75 ||||||||||||||||||||| Sbjct: 96287 gatctgtgtcctcatcacaga 96307
>gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic sequence Length = 338517 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 221 agataggaaaaggagcgaaggggaagggg 249 ||||||||| |||| |||||||||||||| Sbjct: 313453 agataggaagaggaacgaaggggaagggg 313481
>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic sequence Length = 363675 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 221 agataggaaaaggagcgaaggggaagggg 249 ||||||||| |||| |||||||||||||| Sbjct: 328876 agataggaagaggaacgaaggggaagggg 328904
>gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic sequence Length = 328871 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 221 agataggaaaaggagcgaaggggaagggg 249 ||||||||| |||| |||||||||||||| Sbjct: 314432 agataggaagaggaacgaaggggaagggg 314460
>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic sequence Length = 336776 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 221 agataggaaaaggagcgaaggggaagggg 249 ||||||||| |||| |||||||||||||| Sbjct: 307977 agataggaagaggaacgaaggggaagggg 308005
>emb|AL805909.5| Human DNA sequence from clone DAQB-218D23 on chromosome 6 Contains the HCG22 gene for HLA complex group 22 and 1 CpG island, complete sequence Length = 85801 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 221 agataggaaaaggagcgaaggggaagggg 249 ||||||||| |||| |||||||||||||| Sbjct: 67484 agataggaagaggaacgaaggggaagggg 67456
>ref|XM_693626.1| PREDICTED: Danio rerio similar to cellular nucleic acid-binding protein (LOC570180), partial mRNA Length = 317 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 gcagtccctggagatgtggcc 450 ||||||||||||||||||||| Sbjct: 44 gcagtccctggagatgtggcc 24
>gb|AC004196.1|AC004196 Homo sapiens clone UWGC:y24c079 from 6p21, complete sequence Length = 41308 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 221 agataggaaaaggagcgaaggggaagggg 249 ||||||||| |||| |||||||||||||| Sbjct: 18797 agataggaagaggaacgaaggggaagggg 18825
>gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone rp23-355b17, complete sequence Length = 216109 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gatctgtgtcctcatcacaga 75 ||||||||||||||||||||| Sbjct: 197660 gatctgtgtcctcatcacaga 197680
>emb|CR855375.8| Zebrafish DNA sequence from clone CH211-159E12 in linkage group 11, complete sequence Length = 178231 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gcagtccctggagatgtggcc 450 ||||||||||||||||||||| Sbjct: 149812 gcagtccctggagatgtggcc 149832
>emb|AL139339.22| Human DNA sequence from clone RP11-225H22 on chromosome 10 Contains the 3' end of the PDCD11 gene for programmed cell death 11, the 5' end of the NEURL gene for neuralized-like (Drosophila), two novel genes, the FAM26A gene for family with sequence similarity 26, member A, the FAM26B gene for family with sequence similarity 26, member B, the FAM26C gene for family with sequence similarity 26, member C and three CpG islands, complete sequence Length = 103826 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 atctgtgtcctcatcacaga 75 |||||||||||||||||||| Sbjct: 7043 atctgtgtcctcatcacaga 7062
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaaataacttggatctttaa 103 |||||||||||||||||||| Sbjct: 367400 aaaataacttggatctttaa 367381
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 425 tgggggcagtccctggagatgtggccctcctcgccgcact 464 |||| ||||||| ||| ||||||||||||| |||||||| Sbjct: 84342 tgggagcagtccttggccatgtggccctccttgccgcact 84303
>gb|M94390.1|LEIHEXBP Leishmania major HEXBP DNA binding protein (HEXBP) gene, complete cds Length = 1973 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 atgtggccctcctcgccgca 462 |||||||||||||||||||| Sbjct: 752 atgtggccctcctcgccgca 733 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,966,244 Number of Sequences: 3902068 Number of extensions: 2966244 Number of successful extensions: 70953 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70787 Number of HSP's gapped (non-prelim): 160 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
