ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PER40_ARATH (O23474) Peroxidase 40 precursor (EC 1.11.1.7) (Atpe... 36 0.058
2PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atpe... 34 0.22
3PER17_ARATH (Q9SJZ2) Peroxidase 17 precursor (EC 1.11.1.7) (Atpe... 32 0.83
4CCPR_ASPFU (Q4WPF8) Cytochrome c peroxidase, mitochondrial precu... 31 1.9
5CCPR_EMENI (P0C0V3) Cytochrome c peroxidase, mitochondrial precu... 30 3.2
6GDA1_ASPFU (Q8TGG8) Probable guanosine-diphosphatase (EC 3.6.1.4... 30 3.2
7YDFJ_BACSU (P96687) Membrane protein ydfJ 30 4.1
8MRP1_RAT (Q8CG09) Multidrug resistance-associated protein 1 (ATP... 29 5.4
9TNI3K_HUMAN (Q59H18) Serine/threonine-protein kinase TNNI3K (EC ... 29 5.4
10MRP1_MOUSE (O35379) Multidrug resistance-associated protein 1 (A... 29 5.4
11CCPR2_GIBZE (Q4HWQ2) Putative heme-binding peroxidase (EC 1.11.1.-) 29 7.1
12PERE5_ARMRU (P59121) Peroxidase E5 (EC 1.11.1.7) 29 7.1
13CCPR_YEAST (P00431) Cytochrome c peroxidase, mitochondrial precu... 28 9.2
14TNI3K_MOUSE (Q5GIG6) Serine/threonine-protein kinase TNNI3K (EC ... 28 9.2
15CEP72_HUMAN (Q9P209) Centrosomal protein of 72 kDa (Cep72 protein) 28 9.2

>PER40_ARATH (O23474) Peroxidase 40 precursor (EC 1.11.1.7) (Atperox P40)|
          Length = 348

 Score = 35.8 bits (81), Expect = 0.058
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 474 LVHKWANDKDDFFRKFSDAMAKMARLPVSGRTEFRDNC 361
           +V  +A D+  FF  F +AM KM  +P    +E R NC
Sbjct: 307 IVETYATDQSVFFEDFKNAMVKMGGIPGGSNSEIRKNC 344



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>PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22)|
           (ATPEa) (Basic peroxidase E)
          Length = 349

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = -1

Query: 474 LVHKWANDKDDFFRKFSDAMAKMARL-PVSG-RTEFRDNC 361
           LV+++++D   FFR F DAM +M  L P++G + E R NC
Sbjct: 290 LVNQYSSDMSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNC 329



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>PER17_ARATH (Q9SJZ2) Peroxidase 17 precursor (EC 1.11.1.7) (Atperox P17)|
           (ATP25a)
          Length = 329

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 471 VHKWANDKDDFFRKFSDAMAKMARLPVSGRTEFRDNC 361
           V  ++ D+D+FFR F++ M K+  L      E R NC
Sbjct: 279 VKMFSEDQDEFFRAFAEGMVKLGDLQSGRPGEIRFNC 315



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>CCPR_ASPFU (Q4WPF8) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 366

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 471 VHKWANDKDDFFRKFSDAMAKMARL--PVSGRTEFR 370
           V ++A D D FF+ FSDA  K+  L  P + + E R
Sbjct: 324 VERYARDSDAFFKDFSDAFVKLLELGVPFTSKAEDR 359



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>CCPR_EMENI (P0C0V3) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 361

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 471 VHKWANDKDDFFRKFSDAMAKMARLPVSGRTEFRDNCFRRKS 346
           V ++A D D FF++FS+   K+  L V   ++  D    ++S
Sbjct: 319 VERYAKDSDAFFKEFSEVFVKLLELGVPFNSKVEDRYVFKRS 360



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>GDA1_ASPFU (Q8TGG8) Probable guanosine-diphosphatase (EC 3.6.1.42) (GDPase)|
          Length = 503

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 343 HRLAPEAVVTELGSSAHGQTGHLCHGVAE--LPKEIILVVSP 462
           H+LAPE  VT +G    G T   C G+AE  L KE    ++P
Sbjct: 327 HKLAPEVQVTMVGPKV-GSTAAQCRGLAEKTLNKEAACTLAP 367



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>YDFJ_BACSU (P96687) Membrane protein ydfJ|
          Length = 724

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 321 AEGFAASA*EIYGMDHPTSTTSAMP 247
           AE FA +  EI G+DH  S T AMP
Sbjct: 429 AEAFADAVKEIKGLDHVASVTPAMP 453



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>MRP1_RAT (Q8CG09) Multidrug resistance-associated protein 1 (ATP-binding|
            cassette sub-family C member 1) (Leukotriene C(4)
            transporter) (LTC4 transporter)
          Length = 1532

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -1

Query: 396  PVSGRTEFRDNCFRRKS----MRETVNVTAEG 313
            P SGR EFRD C R +     + + +NVT EG
Sbjct: 1289 PHSGRVEFRDYCLRYREDLDLVLKHINVTIEG 1320



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>TNI3K_HUMAN (Q59H18) Serine/threonine-protein kinase TNNI3K (EC 2.7.11.1)|
           (TNNI3-interacting kinase) (Cardiac ankyrin repeat
           kinase)
          Length = 936

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 347 DLRLKQLSRNSVLPLTGKRAIFAMASLNFRKKSSLSLAHL 466
           DL++K+     +  + G    F+  +LN+R ++ LSL HL
Sbjct: 135 DLQIKEKELTELRNIFGSDEAFSKVNLNYRTENGLSLLHL 174



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>MRP1_MOUSE (O35379) Multidrug resistance-associated protein 1 (ATP-binding|
            cassette sub-family C member 1) (Leukotriene C(4)
            transporter) (LTC4 transporter)
          Length = 1528

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -1

Query: 396  PVSGRTEFRDNCFRRKS----MRETVNVTAEG 313
            P SGR EFRD C R +     + + +NVT EG
Sbjct: 1285 PHSGRVEFRDYCLRYREDLDLVLKHINVTIEG 1316



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>CCPR2_GIBZE (Q4HWQ2) Putative heme-binding peroxidase (EC 1.11.1.-)|
          Length = 331

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 471 VHKWANDKDDFFRKFSDAMAKMARLPVSGRTE 376
           V  +A DKD FF+ F  A AK+  L ++  +E
Sbjct: 253 VQLYAKDKDVFFQDFKKAFAKLLELGIARNSE 284



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>PERE5_ARMRU (P59121) Peroxidase E5 (EC 1.11.1.7)|
          Length = 306

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -1

Query: 474 LVHKWANDKDDFFRKFSDAMAKMARL-PVSG-RTEFRDNC 361
           LV+ ++++   FF  F+DAM +M  L P++G + E R NC
Sbjct: 261 LVNLYSSNTLSFFGAFADAMIRMGNLRPLTGTQGEIRQNC 300



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>CCPR_YEAST (P00431) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 361

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 474 LVHKWANDKDDFFRKFSDAMAKM 406
           +V ++AND+D FF+ FS A  K+
Sbjct: 314 IVKEYANDQDKFFKDFSKAFEKL 336



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>TNI3K_MOUSE (Q5GIG6) Serine/threonine-protein kinase TNNI3K (EC 2.7.11.1)|
           (TNNI3-interacting kinase) (Cardiac ankyrin repeat
           kinase)
          Length = 833

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 347 DLRLKQLSRNSVLPLTGKRAIFAMASLNFRKKSSLSLAHL 466
           DL++K+     +  + G    F+  SLN+R +  LSL HL
Sbjct: 33  DLQIKENEFQELRHIFGSDEAFSEVSLNYRTERGLSLLHL 72



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>CEP72_HUMAN (Q9P209) Centrosomal protein of 72 kDa (Cep72 protein)|
          Length = 647

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 335 VSLIDLRLKQLSRNSVLPLTGKRAIFAMASLNFRKKSSLSLAHLW 469
           +SL  L+   LSRNS++ L G + + A+ SLN       SLA ++
Sbjct: 51  MSLTGLKSLDLSRNSLVSLEGIQYLTALESLNLYYNCISSLAEVF 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,231,707
Number of Sequences: 219361
Number of extensions: 1197979
Number of successful extensions: 2884
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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