ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart08e02 |
|---|---|
| Clone Library Name | barley_pub |
>HCBT3_DIACA (O23918) Anthranilate N-benzoyltransferase protein 3 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 3) Length = 445 Score = 55.5 bits (132), Expect = 5e-08 Identities = 30/73 (41%), Positives = 41/73 (56%) Frame = -2 Query: 376 DMVLSPNIEVDSGLRIPFYDMDLGGGRPFFFMPSYLPVEGLLILLPSFLGDGSVDAYVPL 197 + L PN+ V+S RIP+ MD G G P FF S + +G L+PS GDGS+ + L Sbjct: 371 EKTLYPNVLVNSWGRIPYQAMDFGWGNPTFFGISNIFYDGQCFLIPSQNGDGSMTLAINL 430 Query: 196 FSRDMNTFKNRCY 158 FS ++ FK Y Sbjct: 431 FSSHLSLFKKHFY 443
>HCBT2_DIACA (O23917) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) Length = 446 Score = 54.3 bits (129), Expect = 1e-07 Identities = 30/73 (41%), Positives = 41/73 (56%) Frame = -2 Query: 376 DMVLSPNIEVDSGLRIPFYDMDLGGGRPFFFMPSYLPVEGLLILLPSFLGDGSVDAYVPL 197 + L PN+ V+S RIP+ MD G G P FF S + +G L+PS GDGS+ + L Sbjct: 372 EKTLYPNVLVNSWGRIPYQAMDFGWGSPTFFGISNIFYDGQCFLIPSQNGDGSMTLAINL 431 Query: 196 FSRDMNTFKNRCY 158 FS ++ FK Y Sbjct: 432 FSSHLSLFKKYFY 444
>HCBT1_DIACA (O24645) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) Length = 445 Score = 53.9 bits (128), Expect = 2e-07 Identities = 30/73 (41%), Positives = 41/73 (56%) Frame = -2 Query: 376 DMVLSPNIEVDSGLRIPFYDMDLGGGRPFFFMPSYLPVEGLLILLPSFLGDGSVDAYVPL 197 + L PN+ V+S RIP+ MD G G P FF S + +G L+PS GDGS+ + L Sbjct: 371 EKTLYPNVLVNSWGRIPYQAMDFGWGSPTFFGISNIFYDGQCFLIPSRDGDGSMTLAINL 430 Query: 196 FSRDMNTFKNRCY 158 FS ++ FK Y Sbjct: 431 FSSHLSRFKKYFY 443
>VIT_BOMMO (Q27309) Vitellogenin precursor [Contains: Vitellin light chain| (VL); Vitellin light chain rare isoform; Vitellin heavy chain rare isoform; Vitellin heavy chain (VH)] Length = 1782 Score = 31.2 bits (69), Expect = 1.1 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Frame = -1 Query: 365 EPQHRGGQRAADPF-----LRHGLGRRAAILLHAQLPAGGGSAHPAAVFLGRRQRGRLRA 201 + Q GGQ P+ R+ + R L H Q GSA A + + GRL+A Sbjct: 21 QSQSTGGQTYPSPWQVGKQYRYEVTSRT--LAHLQEGPSSGSAFKAQFTIRVKSPGRLQA 78 Query: 200 TL-*PRHEHLQEPLLQPRLGPV-CTYLPCANV 111 L P+H + E L PR PV Y P N+ Sbjct: 79 KLENPQHGNFNEQLPDPRELPVDLKYQPTPNI 110
>HCFC2_RAT (Q5RKG2) Host cell factor 2 (HCF-2) (C2 factor)| Length = 723 Score = 31.2 bits (69), Expect = 1.1 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 327 LFTTWTWAAGGHSSSCPATCRWRVCSSCCRLSWATAAWT 211 +F W G ++ + P C WR SS L+ TA WT Sbjct: 259 IFGGWVPHKGENTENSPHDCEWRCTSSFSYLNLDTAEWT 297
>KR412_HUMAN (Q9BQ66) Keratin-associated protein 4-12 (Keratin-associated| protein 4.12) (Ultrahigh sulfur keratin-associated protein 4.12) Length = 201 Score = 30.4 bits (67), Expect = 1.8 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 7/37 (18%) Frame = -3 Query: 291 SSSCPATCRWRVCSSCC-------RLSWATAAWTPTC 202 SS CP+ C C CC R+S T + PTC Sbjct: 149 SSCCPSCCESSCCRPCCCLRPVCGRVSCHTTCYRPTC 185
>VID21_USTMA (Q4P209) Chromatin modification-related protein VID21| Length = 1654 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +2 Query: 209 GVHAAVAQERRQQDEQTLHRQVAGHEEEWPPAAQVHVVKRDPQ 337 G + A+AQ+ +QQ +Q +Q A + + PPAA ++ Q Sbjct: 1276 GTNQAIAQQTQQQQQQPQSQQTAQMQVQQPPAAAAAAQQQQQQ 1318
>SERA_THASE (Q9S1H0) Selenate reductase alpha subunit precursor (EC 1.97.1.9)| (Selenate reductase molybdenum subunit) Length = 918 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%) Frame = -3 Query: 315 WTWAAGG---HSSSCPATCRWRV 256 WTW + G HS+ C A C WRV Sbjct: 63 WTWDSTGFITHSNGCVAGCAWRV 85
>HCFC2_HUMAN (Q9Y5Z7) Host cell factor 2 (HCF-2) (C2 factor)| Length = 792 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = -3 Query: 327 LFTTWTWAAGGHSSSCPATCRWRVCSSCCRLSWATAAWT 211 +F W G ++ + P C WR SS L+ T WT Sbjct: 259 IFGGWVPHKGENTETSPHDCEWRCTSSFSYLNLDTTEWT 297
>Y2172_MYCBO (P67084) Hypothetical UPF0001 protein Mb2172c| Length = 258 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Frame = +2 Query: 68 NRTRQVANVDPTPGTHWHMAGTCKRDLVEAVATVLEGVHVAAKEWHV-----GVHAAVAQ 232 NR A + + G HWHM G +R+ ++A H V V AA+A+ Sbjct: 81 NRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAVVAALAE 140 Query: 233 ERR 241 RR Sbjct: 141 HRR 143
>Y2148_MYCTU (P67083) Hypothetical UPF0001 protein Rv2148c/MT2207| Length = 258 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Frame = +2 Query: 68 NRTRQVANVDPTPGTHWHMAGTCKRDLVEAVATVLEGVHVAAKEWHV-----GVHAAVAQ 232 NR A + + G HWHM G +R+ ++A H V V AA+A+ Sbjct: 81 NRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAVVAALAE 140 Query: 233 ERR 241 RR Sbjct: 141 HRR 143
>KRA3A_SHEEP (P02443) Keratin, high-sulfur matrix protein, IIIA3A| Length = 130 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 3/48 (6%) Frame = -3 Query: 282 CPATCRWRVCSSCCRLSWATAAWTPT---CHSLAAT*TPSRTVATAST 148 CP +C+ VC CC WAT P C T PS T T Sbjct: 79 CPTSCQAVVCRPCC---WATTCCQPVSVQCPCCRPTSCPSAPRTTCRT 123
>VIF_HV1ND (P18805) Virion infectivity factor (Vif) (SOR protein) [Contains:| p17; p7] Length = 192 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +2 Query: 158 VATVLEGVHVAAKEWHVGVHAAVAQERRQQDEQ 256 V T G+H KEWH+G ++ +R+ Q Sbjct: 65 VVTTYWGLHTGEKEWHLGQGVSIEWRKRRYSTQ 97
>YMH1_CAEEL (P34468) Hypothetical protein F58A4.1| Length = 254 Score = 28.9 bits (63), Expect = 5.3 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = -3 Query: 294 HSSSCPATCRWRVCSSCCRLSWATAAWTPTCHS---LAAT*TPSRTVATASTRSRLHVPA 124 HSS +T S+ S +T+ TPT S AT TP+ + +T +++ P Sbjct: 94 HSSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTTTATSTPTSSSKATTTSAQITQPE 153 Query: 123 MCQCVPG 103 + Q PG Sbjct: 154 IPQAAPG 160
>Y1368_DEIRA (Q9RUL6) Hypothetical UPF0001 protein DR1368| Length = 209 Score = 28.9 bits (63), Expect = 5.3 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Frame = +2 Query: 65 KNRTRQVAN-VDPTPGTHWHMAGTCKRDLVEAVATVLEGVHVAAKEWHVGVHAAVAQERR 241 +NR +++ + V PG WH G +R+ ++ + V VH + W A A E Sbjct: 52 ENRGQELRDKVAGLPGAEWHFIGPLQRNKIKYLRGVTL-VHSIEEPWQAQAIADAAAEWG 110 Query: 242 QQDEQTLHRQVAGHEEEWPPAAQVHVVKRDPQPAV 346 Q L R H E Q H V D PAV Sbjct: 111 QAPAVLLQR----HNGE----GQKHGVLPDDLPAV 137
>KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-associated protein| 2.4) (High sulfur keratin-associated protein 2.4) Length = 128 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Frame = -3 Query: 282 CPATCRWRVCSSCCRLSWAT------AAWTPTCHSLAAT*TPSRTVATAST 148 CP++C VC CC WAT + +P C TP T S+ Sbjct: 80 CPSSCTAVVCRPCC---WATTCCQPVSVQSPCCRPPCGQPTPCSTTCRTSS 127
>GP156_MOUSE (Q6PCP7) Probable G-protein coupled receptor 156 (GABAB-related| G-protein coupled receptor) Length = 798 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 174 SRTVATASTRSRLHVPAMCQCVPGVGST 91 S + A+ R LHVPA CQ V G G++ Sbjct: 421 SENESGAAARDSLHVPAACQHVQGPGAS 448
>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2| Length = 959 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 10/52 (19%) Frame = -1 Query: 293 ILLHAQLPAGGGSA----------HPAAVFLGRRQRGRLRATL*PRHEHLQE 168 +++ AQL G GS HP + + + GR+RA + R EH++E Sbjct: 636 VVIEAQLDRGRGSVATVLIQKGTLHPGDILVAGSEWGRVRALVNDRGEHVKE 687
>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2| Length = 959 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 10/52 (19%) Frame = -1 Query: 293 ILLHAQLPAGGGSA----------HPAAVFLGRRQRGRLRATL*PRHEHLQE 168 +++ AQL G GS HP + + + GR+RA + R EH++E Sbjct: 636 VVIEAQLDRGRGSVATVLIQKGTLHPGDILVAGSEWGRVRALVNDRGEHVKE 687
>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2| Length = 959 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 10/52 (19%) Frame = -1 Query: 293 ILLHAQLPAGGGSA----------HPAAVFLGRRQRGRLRATL*PRHEHLQE 168 +++ AQL G GS HP + + + GR+RA + R EH++E Sbjct: 636 VVIEAQLDRGRGSVATVLIQKGTLHPGDILVAGSEWGRVRALVNDRGEHVKE 687
>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2| Length = 959 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 10/52 (19%) Frame = -1 Query: 293 ILLHAQLPAGGGSA----------HPAAVFLGRRQRGRLRATL*PRHEHLQE 168 +++ AQL G GS HP + + + GR+RA + R EH++E Sbjct: 636 VVIEAQLDRGRGSVATVLIQKGTLHPGDILVAGSEWGRVRALVNDRGEHVKE 687
>RTCA_SALTY (Q8ZLI0) RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)| (RNA-3'-phosphate cyclase) (RNA cyclase) Length = 339 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Frame = -1 Query: 341 RAADPFL-RHGLGRRAAILLHAQLPAGGGSA----HPAAVFLG 228 R +P L R G+ +R ++ H PAGGG+A PAA G Sbjct: 137 RVWEPLLARMGISQRTTLIKHGFYPAGGGAAATVVEPAASLRG 179
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 28.5 bits (62), Expect = 6.9 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = -3 Query: 297 GHSSSCPATCRWRVCSSCCRLSWATAAWTPTCHSLA---AT*TPSRTVATASTRSRLHVP 127 GH S PAT + SS +W T T + A +T TPS T TA L P Sbjct: 4168 GHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPPKVLTSP 4227 Query: 126 A 124 A Sbjct: 4228 A 4228
>VIF_HV1OY (P20890) Virion infectivity factor (Vif) (SOR protein) [Contains:| p17; p7] Length = 192 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +2 Query: 158 VATVLEGVHVAAKEWHVGVHAAVAQERRQQDEQ 256 V T G+H +EWH+G A++ +++ Q Sbjct: 65 VVTTYWGLHTGEREWHLGQGASIEWRKKRYSTQ 97
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated| protein 10.4) (High sulfur keratin-associated protein 10.4) (Keratin-associated protein 18-4) (Keratin-associated protein 18.4) Length = 401 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/56 (35%), Positives = 24/56 (42%) Frame = -3 Query: 369 C*APTSRWTAGCGSLFTTWTWAAGGHSSSCPATCRWRVCSSCCRLSWATAAWTPTC 202 C AP+ A C SL T S CP TC C S C T++ TP+C Sbjct: 41 CCAPSCCAPAPCLSLVCTPVSRVS--SPCCPVTCEPSPCQSGC-----TSSCTPSC 89
>TRUA_SYNP6 (O24712) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 294 Score = 28.1 bits (61), Expect = 9.0 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 13/83 (15%) Frame = +2 Query: 71 RTRQVANVDPTPGT-------HWHMAGTCKRDLVEAVATVLEGVHVAA------KEWHVG 211 R R DP P H++ A C+ + A+ T++ H+AA K H Sbjct: 121 RYRYTIYTDPCPNLFLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHAW 180 Query: 212 VHAAVAQERRQQDEQTLHRQVAG 280 VH A RR+ + Q +G Sbjct: 181 VHVQDAWVRRRDSLIEIEVQASG 203
>ADM2_MOUSE (Q7TNK8) ADM2 precursor (Intermedin) [Contains: Adrenomedullin-2| (Intermedin-long) (IMDL); Intermedin-short (IMDS)] Length = 150 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 314 GLGRRAAILLHAQLPAGGGSAHP 246 G G RA ++H LP GGGS HP Sbjct: 72 GRGNRALAMVH--LPQGGGSRHP 92
>TPT1_YEAST (Q12272) tRNA 2'phosphotransferase (EC 2.7.-.-)| Length = 230 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +2 Query: 239 RQQDEQTLHRQVAGHEEEWPPAAQVHVVK 325 ++ D+Q H + G +EEW A Q H +K Sbjct: 65 KENDKQRFHIKTLGADEEWICATQGHSIK 93
>TIP_PLAF7 (Q8I3H7) T-cell immunomodulatory protein homolog precursor| Length = 719 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -2 Query: 271 LPVEGLLILLPSFLGDGSVDAYVPLFSRDMNTFKNRC 161 LP L +L F GDGS+D VP + ++F N C Sbjct: 329 LPPNSLQVLFGDFNGDGSIDLVVPTCVK--SSFCNYC 363 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,055,426 Number of Sequences: 219361 Number of extensions: 1227427 Number of successful extensions: 4185 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4018 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4174 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
