Clone Name | rbart08e02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (ACT) mRNA, complete cds Length = 1508 Score = 769 bits (388), Expect = 0.0 Identities = 415/424 (97%) Strand = Plus / Minus Query: 1 gaaagattaaaacttcgtttatttactcttcccaaacagaatggataattgaatcaagaa 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1472 gaaagattaaaacttcgtttatttactcttccaaaacagaatggataattgaatcaagaa 1413 Query: 61 cttcaaaaatagaactaggcaagtggctaacgttgatccgacaccaggcacacattggca 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1412 cttcaaaaataaaactaggcaagtggctaacgttgatccgacaccaggcacacattggca 1353 Query: 121 catggcaggtacgtgcaaacgggacctagtcgaggctgtagcaacggttcttgaaggtgt 180 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct: 1352 catggcaggtacgtgcaaacgggacctagtcgaggctgtagcagcagttcttgaaggtgt 1293 Query: 181 tcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtcgcccaagaaagacg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 tcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtcgcccaagaaagacg 1233 Query: 241 gcagcaggatgagcagaccctccaccggcaggtagctgggcatgaagaagaatggccgcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 gcagcaggatgagcagaccctccaccggcaggtagctgggcatgaagaagaatggccgcc 1173 Query: 301 cgccgcccaagtccatgtcgtaaaaagggatccgcagcccgctgtccacctcgatgttgg 360 ||||||| |||||||||||||| || |||||| |||||| |||||||||||||||||||| Sbjct: 1172 cgccgccgaagtccatgtcgtagaacgggatcagcagccagctgtccacctcgatgttgg 1113 Query: 361 ggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctccttctccaccgcgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1112 ggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctccttctccaccgcgc 1053 Query: 421 cgga 424 |||| Sbjct: 1052 cgga 1049
>gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltransferase mRNA, partial cds Length = 1220 Score = 450 bits (227), Expect = e-123 Identities = 310/335 (92%), Gaps = 2/335 (0%) Strand = Plus / Minus Query: 90 acgttgatccgacaccaggcacacattggcacatggcaggtacgtgcaaacgggacctag 149 |||| |||||||||||| ||||||||| |||| |||||||||||| ||| ||| | |||| Sbjct: 1116 acgtcgatccgacaccacgcacacatttgcacttggcaggtacgt-caagcgg-agctag 1059 Query: 150 tcgaggctgtagcaacggttcttgaaggtgttcatgtcgcggctaaagagtggcacgtag 209 |||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1058 tcgagggtgtagcagcagttcttgaaagtgttcatgtcgcggctaaagagtggcacgtag 999 Query: 210 gcgtccacgctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggc 269 ||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 998 gcgcccacgctgccgtcgcccaagaaggacggtagcaggatgagcaggccctccaccggc 939 Query: 270 aggtagctgggcatgaagaagaatggccgcccgccgcccaagtccatgtcgtaaaaaggg 329 ||||||||||||||||||||||| ||||| |||||||| | |||||||||||| || ||| Sbjct: 938 aggtagctgggcatgaagaagaagggccggccgccgccgaggtccatgtcgtagaacggg 879 Query: 330 atccgcagcccgctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggcc 389 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 878 atccgcagccagctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggcc 819 Query: 390 gtcgccaccagccgctccttctccaccgcgccgga 424 |||||||||||||| ||||||||||||| |||||| Sbjct: 818 gtcgccaccagccgttccttctccaccgtgccgga 784 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 47 aattgaatcaagaacttcaaaaatagaactaggcaagt 84 ||||||||||||||||||||||||| |||||||||||| Sbjct: 1188 aattgaatcaagaacttcaaaaatacaactaggcaagt 1151
>ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 347 bits (175), Expect = 2e-92 Identities = 244/267 (91%) Strand = Plus / Minus Query: 158 gtagcaacggttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 217 |||||| | |||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 1257 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1198 Query: 218 gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 277 ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 1197 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 1138 Query: 278 gggcatgaagaagaatggccgcccgccgcccaagtccatgtcgtaaaaagggatccgcag 337 |||||||||||||||||||||||||||||| ||||| | |||||| || ||||||||||| Sbjct: 1137 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 1078 Query: 338 cccgctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 397 || |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct: 1077 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 1018 Query: 398 cagccgctccttctccaccgcgccgga 424 ||||||||||| ||||||||| ||||| Sbjct: 1017 cagccgctcctcctccaccgcaccgga 991
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 347 bits (175), Expect = 2e-92 Identities = 244/267 (91%) Strand = Plus / Minus Query: 158 gtagcaacggttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 217 |||||| | |||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 11597 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 11538 Query: 218 gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 277 ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 11537 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 11478 Query: 278 gggcatgaagaagaatggccgcccgccgcccaagtccatgtcgtaaaaagggatccgcag 337 |||||||||||||||||||||||||||||| ||||| | |||||| || ||||||||||| Sbjct: 11477 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 11418 Query: 338 cccgctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 397 || |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct: 11417 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 11358 Query: 398 cagccgctccttctccaccgcgccgga 424 ||||||||||| ||||||||| ||||| Sbjct: 11357 cagccgctcctcctccaccgcaccgga 11331 Score = 297 bits (150), Expect = 2e-77 Identities = 231/258 (89%) Strand = Plus / Plus Query: 167 gttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtc 226 |||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct: 13917 gttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacgctgccgtc 13976 Query: 227 gcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctgggcatgaa 286 ||| ||||||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| Sbjct: 13977 gccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagctaggcgtgaa 14036 Query: 287 gaagaatggccgcccgccgcccaagtccatgtcgtaaaaagggatccgcagcccgctgtc 346 | ||||||| | |||| ||| ||||| | ||||| || ||||||||||||| |||||| Sbjct: 14037 caggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagccagctgtc 14096 Query: 347 cacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctc 406 |||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 14097 cacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccaccagccgctc 14156 Query: 407 cttctccaccgcgccgga 424 || ||||||||||||||| Sbjct: 14157 ctcctccaccgcgccgga 14174
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 347 bits (175), Expect = 2e-92 Identities = 244/267 (91%) Strand = Plus / Minus Query: 158 gtagcaacggttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 217 |||||| | |||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 33960700 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 33960641 Query: 218 gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 277 ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 33960640 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 33960581 Query: 278 gggcatgaagaagaatggccgcccgccgcccaagtccatgtcgtaaaaagggatccgcag 337 |||||||||||||||||||||||||||||| ||||| | |||||| || ||||||||||| Sbjct: 33960580 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 33960521 Query: 338 cccgctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 397 || |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct: 33960520 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 33960461 Query: 398 cagccgctccttctccaccgcgccgga 424 ||||||||||| ||||||||| ||||| Sbjct: 33960460 cagccgctcctcctccaccgcaccgga 33960434 Score = 297 bits (150), Expect = 2e-77 Identities = 231/258 (89%) Strand = Plus / Plus Query: 167 gttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtc 226 |||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct: 33963020 gttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacgctgccgtc 33963079 Query: 227 gcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctgggcatgaa 286 ||| ||||||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| Sbjct: 33963080 gccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagctaggcgtgaa 33963139 Query: 287 gaagaatggccgcccgccgcccaagtccatgtcgtaaaaagggatccgcagcccgctgtc 346 | ||||||| | |||| ||| ||||| | ||||| || ||||||||||||| |||||| Sbjct: 33963140 caggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagccagctgtc 33963199 Query: 347 cacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctc 406 |||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 33963200 cacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccaccagccgctc 33963259 Query: 407 cttctccaccgcgccgga 424 || ||||||||||||||| Sbjct: 33963260 ctcctccaccgcgccgga 33963277
>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence Length = 1640 Score = 347 bits (175), Expect = 2e-92 Identities = 244/267 (91%) Strand = Plus / Minus Query: 158 gtagcaacggttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 217 |||||| | |||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 1411 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1352 Query: 218 gctgccgtcgcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagct 277 ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 1351 gctcccgtcgccgaagaaagacggcagcaggatgagcaaaccttccaccggcaggtagct 1292 Query: 278 gggcatgaagaagaatggccgcccgccgcccaagtccatgtcgtaaaaagggatccgcag 337 |||||||||||||||||||||||||||||| ||||| | |||||| || ||||||||||| Sbjct: 1291 gggcatgaagaagaatggccgcccgccgccgaagtcgaggtcgtagaacgggatccgcag 1232 Query: 338 cccgctgtccacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccac 397 || |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct: 1231 ccagctgtccacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccac 1172 Query: 398 cagccgctccttctccaccgcgccgga 424 ||||||||||| ||||||||| ||||| Sbjct: 1171 cagccgctcctcctccaccgcaccgga 1145
>ref|XM_474244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 297 bits (150), Expect = 2e-77 Identities = 231/258 (89%) Strand = Plus / Minus Query: 167 gttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtc 226 |||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct: 1320 gttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacgctgccgtc 1261 Query: 227 gcccaagaaagacggcagcaggatgagcagaccctccaccggcaggtagctgggcatgaa 286 ||| ||||||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| Sbjct: 1260 gccggagaaagatggcaggaggatgagaagaccctccaccggcaggtagctaggcgtgaa 1201 Query: 287 gaagaatggccgcccgccgcccaagtccatgtcgtaaaaagggatccgcagcccgctgtc 346 | ||||||| | |||| ||| ||||| | ||||| || ||||||||||||| |||||| Sbjct: 1200 caggaatggctggccgctgccgaagtcaagctcgtagaacgggatccgcagccagctgtc 1141 Query: 347 cacctcgatgttggggctcagcaccatgtccgccgcgtcggccgtcgccaccagccgctc 406 |||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 1140 cacctcgatgttcgggctcagcaccatctccgccgcgtcggccgacgccaccagccgctc 1081 Query: 407 cttctccaccgcgccgga 424 || ||||||||||||||| Sbjct: 1080 ctcctccaccgcgccgga 1063
>ref|XM_469315.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Minus Query: 195 aagagtggcacgtaggcgtccacgctgccgtcgcc 229 ||||||||||||||| |||| | |||||||||||| Sbjct: 1340 aagagtggcacgtagacgtcgatgctgccgtcgcc 1306
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Minus Query: 195 aagagtggcacgtaggcgtccacgctgccgtcgcc 229 ||||||||||||||| |||| | |||||||||||| Sbjct: 26918691 aagagtggcacgtagacgtcgatgctgccgtcgcc 26918657
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Minus Query: 195 aagagtggcacgtaggcgtccacgctgccgtcgcc 229 ||||||||||||||| |||| | |||||||||||| Sbjct: 97691 aagagtggcacgtagacgtcgatgctgccgtcgcc 97657
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Minus Query: 195 aagagtggcacgtaggcgtccacgctgccgtcgcc 229 ||||||||||||||| |||| | |||||||||||| Sbjct: 27010014 aagagtggcacgtagacgtcgatgctgccgtcgcc 27009980
>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the 5' end of the RSU1 gene for Ras suppressor protein 1, the 3' end of the CUBN gene for cubilin (intrinsic factor-cobalamin receptor) and a CpG island, complete sequence Length = 184703 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 ctcgatgttggggctcagcac 370 ||||||||||||||||||||| Sbjct: 51790 ctcgatgttggggctcagcac 51810
>emb|BX027057.1|CNS08T1H Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA40CC11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 279 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 381 gcgtcggccgtcgccaccagc 401 ||||||||||||||||||||| Sbjct: 131 gcgtcggccgtcgccaccagc 111
>emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II BAC contig B23B10 Length = 99967 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 agtggctaacgttgatccgacacca 106 |||||||||||| |||||||||||| Sbjct: 33123 agtggctaacgtcgatccgacacca 33147
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 gccgtcgccaccagccgctcc 407 ||||||||||||||||||||| Sbjct: 100054 gccgtcgccaccagccgctcc 100074
>ref|XM_315590.2| Anopheles gambiae str. PEST ENSANGP00000017720 (ENSANGG00000015231), partial mRNA Length = 966 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 gcgtcggccgtcgccaccagc 401 ||||||||||||||||||||| Sbjct: 820 gcgtcggccgtcgccaccagc 840
>ref|XM_633465.1| Dictyostelium discoideum hypothetical protein (DDB0218618), partial mRNA Length = 1587 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tgaatcaagaacttcaaaaa 69 |||||||||||||||||||| Sbjct: 1145 tgaatcaagaacttcaaaaa 1164
>gb|AF025467.1| Caenorhabditis elegans cosmid R148, complete sequence Length = 37154 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 caagaaagacggcagcagga 249 |||||||||||||||||||| Sbjct: 2399 caagaaagacggcagcagga 2418
>gb|AC144673.3| Mus musculus BAC clone RP23-40K14 from chromosome 14, complete sequence Length = 162333 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttaaaacttcgtttatttac 26 |||||||||||||||||||| Sbjct: 115760 ttaaaacttcgtttatttac 115741
>gb|AE007288.1| Sinorhizobium meliloti 1021 plasmid pSymA section 94 of 121 of the complete plasmid sequence Length = 10943 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 tcggccgtcgccaccagccg 403 |||||||||||||||||||| Sbjct: 2761 tcggccgtcgccaccagccg 2742
>gb|AY577002.1| Danio rerio clone RZ150A4A11 C22orf4-like protein mRNA, complete cds Length = 2068 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 caagaaagacggcagcagga 249 |||||||||||||||||||| Sbjct: 372 caagaaagacggcagcagga 391
>emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic acid 3-O-methyltransferase Length = 1486 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 caccatgtccgccgcgtcgg 387 |||||||||||||||||||| Sbjct: 335 caccatgtccgccgcgtcgg 316
>gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyltransferase (COMT) gene, complete cds Length = 2012 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 caccatgtccgccgcgtcgg 387 |||||||||||||||||||| Sbjct: 231 caccatgtccgccgcgtcgg 212
>gb|U13072.1| Caenorhabditis elegans cosmid C07D10, complete sequence Length = 27935 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ttgaatcaagaacttcaaaa 68 |||||||||||||||||||| Sbjct: 19499 ttgaatcaagaacttcaaaa 19518
>ref|NM_181961.1| Caenorhabditis elegans R148.5b (R148.5) mRNA, complete cds Length = 1518 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 caagaaagacggcagcagga 249 |||||||||||||||||||| Sbjct: 637 caagaaagacggcagcagga 656
>ref|NM_065264.3| Caenorhabditis elegans R148.5a (R148.5) mRNA, complete cds Length = 1848 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 caagaaagacggcagcagga 249 |||||||||||||||||||| Sbjct: 637 caagaaagacggcagcagga 656
>ref|NM_214799.1| Danio rerio zgc:101677 (zgc:101677), mRNA Length = 2068 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 caagaaagacggcagcagga 249 |||||||||||||||||||| Sbjct: 372 caagaaagacggcagcagga 391
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccgcccgccgcccaagtcca 315 |||||||||||||||||||| Sbjct: 3974381 ccgcccgccgcccaagtcca 3974362
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 ccgccgcgtcggccgtcgccacca 399 ||||||||||| |||||||||||| Sbjct: 29600703 ccgccgcgtcgcccgtcgccacca 29600726
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1663_H12 Length = 125422 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 ccgccgcgtcggccgtcgccacca 399 ||||||||||| |||||||||||| Sbjct: 44288 ccgccgcgtcgcccgtcgccacca 44311
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 ccgccgcgtcggccgtcgccacca 399 ||||||||||| |||||||||||| Sbjct: 165209 ccgccgcgtcgcccgtcgccacca 165232
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccgcccgccgcccaagtcca 315 |||||||||||||||||||| Sbjct: 3974357 ccgcccgccgcccaagtcca 3974338
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccgcccgccgcccaagtcca 315 |||||||||||||||||||| Sbjct: 10791 ccgcccgccgcccaagtcca 10772
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccgcccgccgcccaagtcca 315 |||||||||||||||||||| Sbjct: 136357 ccgcccgccgcccaagtcca 136338
>dbj|AP003385.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-655M14, complete sequences Length = 174074 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aggcacacattggcacatgg 125 |||||||||||||||||||| Sbjct: 72264 aggcacacattggcacatgg 72245 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,542,265 Number of Sequences: 3902068 Number of extensions: 3542265 Number of successful extensions: 78554 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78283 Number of HSP's gapped (non-prelim): 270 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)