ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108935.1| Zea mays PCO091688 mRNA sequence 262 8e-67
2dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 8e-61
3dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 8e-61
4gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom... 210 3e-51
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 210 3e-51
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
7ref|XM_480999.1| Oryza sativa (japonica cultivar-group), mRNA 192 6e-46
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
9dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
10dbj|AK059045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
12dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
13dbj|AK072410.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.023
14ref|XM_476364.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.092
15ref|NM_194218.2| Oryza sativa (japonica cultivar-group), mRNA 46 0.092
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.092
17dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.092
18dbj|AK109056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.092
19dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
20dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
21dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
22dbj|AK060606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.36
23gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold 42 1.4
24gb|AC026398.5| Homo sapiens chromosome 5 clone CTB-127M13, compl... 42 1.4
25gb|AF038840.1|AF038840 Dendrobium crumenatum 1-aminocyclopropane... 42 1.4
26gb|AY598795.1| Laelia anceps 1-aminocyclopropane-1-carboxylate o... 40 5.7
27gb|AY598794.1| Cattleya intermedia 1-aminocyclopropane-1-carboxy... 40 5.7
28gb|AY598793.1| Cattleya bicolor 1-aminocyclopropane-1-carboxylat... 40 5.7
29emb|AL589703.6| Human DNA sequence from clone RP11-127L21 on chr... 40 5.7
30gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, comp... 40 5.7
31gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 40 5.7
32gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map... 40 5.7
33gb|AC027273.5| Homo sapiens BAC clone RP11-764F10 from 4, comple... 40 5.7
34gb|AC016343.5| Homo sapiens chromosome 15, clone RP11-142M4, com... 40 5.7
35gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.7
36dbj|AK045273.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 5.7
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
38gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana... 40 5.7
39gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, com... 40 5.7
40gb|AC012190.3|T22I11 Arabidopsis thaliana chromosome 1 BAC T22I1... 40 5.7
41gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana... 40 5.7
42dbj|AP005926.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
43emb|AL928908.16| Zebrafish DNA sequence from clone DKEY-221L4 in... 40 5.7
44gb|AE005109.1| Halobacterium sp. NRC-1 section 140 of 170 of the... 40 5.7
45dbj|AB010693.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.7
46dbj|AB028611.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 5.7
47gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
48emb|AL606908.10| Mouse DNA sequence from clone RP23-273D6 on chr... 40 5.7 
>gb|AY108935.1| Zea mays PCO091688 mRNA sequence
          Length = 1084

 Score =  262 bits (132), Expect = 8e-67
 Identities = 228/260 (87%)
 Strand = Plus / Minus

                                                                       
Query: 165 gcgatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaag 224
           |||||||| | ||| || |||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 820 gcgatctgaatgttctccacgttgagcttcttgaagttgctgttcttcctggtgctgaag 761

                                                                       
Query: 225 aagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctcc 284
           |||| ||||||||||||||||||||||||||  ||    || | |||||||| |||||||
Sbjct: 760 aagtcgccccagttgtaggcgtcgtacctgggcggatcgtccttgctcaccagctcctcc 701

                                                                       
Query: 285 aacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcc 344
           | |||||| ||||||| || | |  | |||||||||||||||||||||||||||||||||
Sbjct: 700 accggctccaccatggtgtaggtcgccgggttgaagaagtagggcatggagaacctctcc 641

                                                                       
Query: 345 ttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacc 404
            |  ||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 640 ctcgccgagttcaccgacacccggtgctccgcgctctcgtacctgtcgttgctccacacc 581

                               
Query: 405 tggatgatgtcgccgacgtt 424
           ||||||| ||||||||||||
Sbjct: 580 tggatgaggtcgccgacgtt 561
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>dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026A10, full
            insert sequence
          Length = 1337

 Score =  242 bits (122), Expect = 8e-61
 Identities = 224/258 (86%)
 Strand = Plus / Minus

                                                                        
Query: 167  gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 226
            |||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1104 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 1045

                                                                        
Query: 227  gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 286
             | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 1044 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 985

                                                                        
Query: 287  cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 346
             ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 984  tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 925

                                                                        
Query: 347  gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 406
             |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 924  ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 865

                              
Query: 407  gatgatgtcgccgacgtt 424
            ||||||||||||||||||
Sbjct: 864  gatgatgtcgccgacgtt 847
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>dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B03, full
            insert sequence
          Length = 1449

 Score =  242 bits (122), Expect = 8e-61
 Identities = 224/258 (86%)
 Strand = Plus / Minus

                                                                        
Query: 167  gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 226
            |||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1210 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 1151

                                                                        
Query: 227  gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 286
             | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 1150 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 1091

                                                                        
Query: 287  cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 346
             ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 1090 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 1031

                                                                        
Query: 347  gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 406
             |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1030 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 971

                              
Query: 407  gatgatgtcgccgacgtt 424
            ||||||||||||||||||
Sbjct: 970  gatgatgtcgccgacgtt 953
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>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
             sequence
          Length = 154558

 Score =  210 bits (106), Expect = 3e-51
 Identities = 208/242 (85%)
 Strand = Plus / Plus

                                                                         
Query: 167   gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 226
             |||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 94441 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 94500

                                                                         
Query: 227   gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 286
              | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 94501 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 94560

                                                                         
Query: 287   cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 346
              ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 94561 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 94620

                                                                         
Query: 347   gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 406
              |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 94621 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 94680

               
Query: 407   ga 408
             ||
Sbjct: 94681 ga 94682



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 402   acctggatgatgtcgccgacgtt 424
             |||||||||||||||||||||||
Sbjct: 95247 acctggatgatgtcgccgacgtt 95269
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  210 bits (106), Expect = 3e-51
 Identities = 208/242 (85%)
 Strand = Plus / Plus

                                                                            
Query: 167      gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 226
                |||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 23257960 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 23258019

                                                                            
Query: 227      gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 286
                 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 23258020 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 23258079

                                                                            
Query: 287      cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 346
                 ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 23258080 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 23258139

                                                                            
Query: 347      gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 406
                 |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 23258140 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 23258199

                  
Query: 407      ga 408
                ||
Sbjct: 23258200 ga 23258201



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 402      acctggatgatgtcgccgacgtt 424
                |||||||||||||||||||||||
Sbjct: 23258766 acctggatgatgtcgccgacgtt 23258788
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  210 bits (106), Expect = 3e-51
 Identities = 208/242 (85%)
 Strand = Plus / Plus

                                                                            
Query: 167      gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 226
                |||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 23250988 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 23251047

                                                                            
Query: 227      gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 286
                 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 23251048 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 23251107

                                                                            
Query: 287      cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 346
                 ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 23251108 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 23251167

                                                                            
Query: 347      gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 406
                 |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 23251168 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 23251227

                  
Query: 407      ga 408
                ||
Sbjct: 23251228 ga 23251229



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 402      acctggatgatgtcgccgacgtt 424
                |||||||||||||||||||||||
Sbjct: 23251794 acctggatgatgtcgccgacgtt 23251816
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>ref|XM_480999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 939

 Score =  192 bits (97), Expect = 6e-46
 Identities = 226/269 (84%)
 Strand = Plus / Minus

                                                                       
Query: 156 ctgaagtgtgcgatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctg 215
           ||||| || |||||||| | ||| || ||||| ||||| ||||||| ||  |||||||||
Sbjct: 911 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 852

                                                                       
Query: 216 gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 275
           ||||||||||| | |||||||  |||||  | ||||||||| || ||||| || ||||| 
Sbjct: 851 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 792

                                                                       
Query: 276 atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 335
           ||||||||||| ||||| ||||||| || |||  | |||| ||||||| | |||||||||
Sbjct: 791 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 732

                                                                       
Query: 336 aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 395
           ||||||||||| |||  ||| |  | ||||| |||||| ||||||||||||||||| |||
Sbjct: 731 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 672

                                        
Query: 396 ctccacacctggatgatgtcgccgacgtt 424
           |||||||||||||||||||||||||||||
Sbjct: 671 ctccacacctggatgatgtcgccgacgtt 643
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  159 bits (80), Expect = 9e-36
 Identities = 209/252 (82%)
 Strand = Plus / Plus

                                                                           
Query: 156     ctgaagtgtgcgatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctg 215
               ||||| || |||||||| | ||| || ||||| ||||| ||||||| ||  |||||||||
Sbjct: 9159653 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 9159712

                                                                           
Query: 216     gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 275
               ||||||||||| | |||||||  |||||  | ||||||||| || ||||| || ||||| 
Sbjct: 9159713 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 9159772

                                                                           
Query: 276     atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 335
               ||||||||||| ||||| ||||||| || |||  | |||| ||||||| | |||||||||
Sbjct: 9159773 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 9159832

                                                                           
Query: 336     aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 395
               ||||||||||| |||  ||| |  | ||||| |||||| ||||||||||||||||| |||
Sbjct: 9159833 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 9159892

                           
Query: 396     ctccacacctgg 407
               ||||||||||||
Sbjct: 9159893 ctccacacctgg 9159904



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 402     acctggatgatgtcgccgacgtt 424
               |||||||||||||||||||||||
Sbjct: 9160264 acctggatgatgtcgccgacgtt 9160286
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>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0012K14
          Length = 155544

 Score =  159 bits (80), Expect = 9e-36
 Identities = 209/252 (82%)
 Strand = Plus / Plus

                                                                         
Query: 156   ctgaagtgtgcgatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctg 215
             ||||| || |||||||| | ||| || ||||| ||||| ||||||| ||  |||||||||
Sbjct: 95147 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 95206

                                                                         
Query: 216   gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 275
             ||||||||||| | |||||||  |||||  | ||||||||| || ||||| || ||||| 
Sbjct: 95207 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 95266

                                                                         
Query: 276   atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 335
             ||||||||||| ||||| ||||||| || |||  | |||| ||||||| | |||||||||
Sbjct: 95267 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 95326

                                                                         
Query: 336   aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 395
             ||||||||||| |||  ||| |  | ||||| |||||| ||||||||||||||||| |||
Sbjct: 95327 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 95386

                         
Query: 396   ctccacacctgg 407
             ||||||||||||
Sbjct: 95387 ctccacacctgg 95398



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 402   acctggatgatgtcgccgacgtt 424
             |||||||||||||||||||||||
Sbjct: 95758 acctggatgatgtcgccgacgtt 95780
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>dbj|AK059045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D08, full
           insert sequence
          Length = 1741

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 362 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 406
           ||||||||||||  |||||| |||||||| |||||||||| ||||
Sbjct: 989 caccctgtgctccacgctcttgtacctgttgttgctccacgcctg 945
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 362      caccctgtgctcggcgctctcgtacctgtcgttgctccac 401
                ||||||||||||  |||||| |||||||| ||||||||||
Sbjct: 25218445 caccctgtgctccacgctcttgtacctgttgttgctccac 25218484
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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1469H02
          Length = 136602

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 362    caccctgtgctcggcgctctcgtacctgtcgttgctccac 401
              ||||||||||||  |||||| |||||||| ||||||||||
Sbjct: 118838 caccctgtgctccacgctcttgtacctgttgttgctccac 118877
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>dbj|AK072410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083A20, full
            insert sequence
          Length = 2655

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 362  caccctgtgctcggcgctctcgtacctgtcgttgctccac 401
            ||||||||||||  |||||| |||||||| ||||||||||
Sbjct: 2208 caccctgtgctccacgctcttgtacctgttgttgctccac 2169
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>ref|XM_476364.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1077

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                       
Query: 362 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 421
           ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 221 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 280

              
Query: 422 gtt 424
           |||
Sbjct: 281 gtt 283
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>ref|NM_194218.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1729

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 362  caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 421
            ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 1218 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 1159

               
Query: 422  gtt 424
            |||
Sbjct: 1158 gtt 1156
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                          
Query: 362    caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 421
              ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 218032 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 217973

                 
Query: 422    gtt 424
              |||
Sbjct: 217972 gtt 217970
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>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0446F04
          Length = 175390

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 362   caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 421
             ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 52896 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 52837

                
Query: 422   gtt 424
             |||
Sbjct: 52836 gtt 52834
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>dbj|AK109056.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E10, full
           insert sequence
          Length = 1076

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                       
Query: 362 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 421
           ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 221 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 280

              
Query: 422 gtt 424
           |||
Sbjct: 281 gtt 283
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 287      cggctcgaccatggcgtcgctg 308
                ||||||||||||||||||||||
Sbjct: 14402714 cggctcgaccatggcgtcgctg 14402693



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 398     ccacacctggatgatgtcgc 417
               ||||||||||||||||||||
Sbjct: 8465466 ccacacctggatgatgtcgc 8465485
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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0465E03
          Length = 151206

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 287   cggctcgaccatggcgtcgctg 308
             ||||||||||||||||||||||
Sbjct: 94517 cggctcgaccatggcgtcgctg 94496
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>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1585_D02
          Length = 103172

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 287  cggctcgaccatggcgtcgctg 308
            ||||||||||||||||||||||
Sbjct: 2279 cggctcgaccatggcgtcgctg 2258
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>dbj|AK060606.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B10, full
           insert sequence
          Length = 1752

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 287 cggctcgaccatggcgtcgctg 308
           ||||||||||||||||||||||
Sbjct: 91  cggctcgaccatggcgtcgctg 112
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>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold
          Length = 489372

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 192    tttttgaagttgctgttcttc 212
              |||||||||||||||||||||
Sbjct: 461046 tttttgaagttgctgttcttc 461026
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>gb|AC026398.5| Homo sapiens chromosome 5 clone CTB-127M13, complete sequence
          Length = 88783

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   tttttgaagttgctgttcttc 212
             |||||||||||||||||||||
Sbjct: 44642 tttttgaagttgctgttcttc 44662
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>gb|AF038840.1|AF038840 Dendrobium crumenatum 1-aminocyclopropane-1-carboxylate oxidase
           mRNA, complete cds
          Length = 1544

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 299 ggcgtcgctgccggggttgaagaag 323
           ||||||||||||||||||| |||||
Sbjct: 944 ggcgtcgctgccggggttgtagaag 920
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>gb|AY598795.1| Laelia anceps 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1050

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 299 ggcgtcgctgccggggttgaagaa 322
           ||||||||||||||||||| ||||
Sbjct: 732 ggcgtcgctgccggggttgtagaa 709
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>gb|AY598794.1| Cattleya intermedia 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1024

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 299 ggcgtcgctgccggggttgaagaa 322
           ||||||||||||||||||| ||||
Sbjct: 731 ggcgtcgctgccggggttgtagaa 708
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>gb|AY598793.1| Cattleya bicolor 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1300

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 299 ggcgtcgctgccggggttgaagaa 322
           ||||||||||||||||||| ||||
Sbjct: 997 ggcgtcgctgccggggttgtagaa 974
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>emb|AL589703.6| Human DNA sequence from clone RP11-127L21 on chromosome 9 Contains a
            novel gene and a pseudogene similar to part of tubulin
            beta chain, complete sequence
          Length = 48697

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  tttgaagttgctgttcttcc 213
            ||||||||||||||||||||
Sbjct: 3732 tttgaagttgctgttcttcc 3751
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>gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, complete sequence
          Length = 158556

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   tttttgaagttgctgttctt 211
             ||||||||||||||||||||
Sbjct: 91702 tttttgaagttgctgttctt 91683
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>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
             sequence
          Length = 152172

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gtagtactattacaaatggt 90
             ||||||||||||||||||||
Sbjct: 61789 gtagtactattacaaatggt 61808
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>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
             sequence
          Length = 131743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    cataaggttggaattaatac 55
             ||||||||||||||||||||
Sbjct: 85519 cataaggttggaattaatac 85500
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>gb|AC027273.5| Homo sapiens BAC clone RP11-764F10 from 4, complete sequence
          Length = 201621

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    gcttagattcattcaaaggt 147
              ||||||||||||||||||||
Sbjct: 116762 gcttagattcattcaaaggt 116781
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>gb|AC016343.5| Homo sapiens chromosome 15, clone RP11-142M4, complete sequence
          Length = 177386

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   tttttgaagttgctgttctt 211
             ||||||||||||||||||||
Sbjct: 29399 tttttgaagttgctgttctt 29418
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 287     cggctcgaccatggcgtcgc 306
               ||||||||||||||||||||
Sbjct: 1716746 cggctcgaccatggcgtcgc 1716765
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>dbj|AK045273.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130054L12
           product:unclassifiable, full insert sequence
          Length = 3126

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgctgttcttcctggtgctg 221
           ||||||||||||||||||||
Sbjct: 825 tgctgttcttcctggtgctg 844
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 71       gtagtactattacaaatggt 90
                ||||||||||||||||||||
Sbjct: 19314592 gtagtactattacaaatggt 19314573
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>gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana BAC F22O13 from chromosome I,
             complete sequence
          Length = 133843

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    cataaggttggaattaatac 55
             ||||||||||||||||||||
Sbjct: 94416 cataaggttggaattaatac 94435
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>gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, complete sequence
          Length = 158682

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    tttttgaagttgctgttctt 211
              ||||||||||||||||||||
Sbjct: 134423 tttttgaagttgctgttctt 134442
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>gb|AC012190.3|T22I11 Arabidopsis thaliana chromosome 1 BAC T22I11 sequence, complete
             sequence
          Length = 68986

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    cataaggttggaattaatac 55
             ||||||||||||||||||||
Sbjct: 59525 cataaggttggaattaatac 59544
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>gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I,
             complete sequence
          Length = 158096

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    cataaggttggaattaatac 55
             ||||||||||||||||||||
Sbjct: 31351 cataaggttggaattaatac 31332
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>dbj|AP005926.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0054E15
          Length = 142898

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   ccacacctggatgatgtcgc 417
             ||||||||||||||||||||
Sbjct: 90815 ccacacctggatgatgtcgc 90834
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>emb|AL928908.16| Zebrafish DNA sequence from clone DKEY-221L4 in linkage group 17,
             complete sequence
          Length = 229790

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   agttgctgttcttcctggtg 218
             ||||||||||||||||||||
Sbjct: 20937 agttgctgttcttcctggtg 20956
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>gb|AE005109.1| Halobacterium sp. NRC-1 section 140 of 170 of the complete genome
          Length = 12026

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  cggctcgaccatggcgtcgctgcc 310
            |||| |||||||||||||||||||
Sbjct: 4039 cggcgcgaccatggcgtcgctgcc 4016
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>dbj|AB010693.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21C13
          Length = 75709

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    cataaggttggaattaatac 55
             ||||||||||||||||||||
Sbjct: 24037 cataaggttggaattaatac 24056
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>dbj|AB028611.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFE16
          Length = 82646

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    cataaggttggaattaatac 55
             ||||||||||||||||||||
Sbjct: 24542 cataaggttggaattaatac 24561
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 71       gtagtactattacaaatggt 90
                ||||||||||||||||||||
Sbjct: 19325868 gtagtactattacaaatggt 19325849
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>emb|AL606908.10| Mouse DNA sequence from clone RP23-273D6 on chromosome 4, complete
              sequence
          Length = 212360

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    tgctgttcttcctggtgctg 221
              ||||||||||||||||||||
Sbjct: 132693 tgctgttcttcctggtgctg 132674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,356,594
Number of Sequences: 3902068
Number of extensions: 3356594
Number of successful extensions: 62545
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62264
Number of HSP's gapped (non-prelim): 273
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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