>STA5A_SHEEP (P42231) Signal transducer and activator of transcription 5A|
           (Mammary gland factor)
          Length = 794

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1   QRYQCSFQESN-RTVQLIHTNQT*ILCSPPISWNQSHTWSLLEQTRRS 141
           Q+Y+    E + +T+QL+   QT IL    I W + H W  +E   RS
Sbjct: 224 QQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRHDWRGMEAPPRS 271

>CBIO1_MYCMS (Q6MSQ2) Cobalt import ATP-binding protein cbiO 1|
          Length = 303

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 130 FVPRETTCVIGSTRSGVST--EFTSGLCVS 47
           F   + TCVIG+T SG ST  + T+GL +S
Sbjct: 48  FKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 77

>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP|
           3'-pyrophosphotransferase) (ppGpp synthetase I)
           ((P)ppGpp synthetase)
          Length = 841

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 393 AHAGDGGARVPGEDDLPAELRARQVRPGGAP 301
           AHA DGG  V  +   PA+  A + RP  AP
Sbjct: 25  AHAQDGGGPVEHDRSAPADKPAERTRPKPAP 55

>CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 340

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 84  PDLVEPITHVVSLGTNQTFNNQQHVALYGTRLL 182
           PD  +  THV ++   Q FN+Q+ VAL G   L
Sbjct: 194 PDASQGATHVRNVFNRQGFNDQEMVALIGAHAL 226

>CBIO2_MESFL (Q6F1W4) Cobalt import ATP-binding protein cbiO 2|
          Length = 315

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -2

Query: 121 RETTCVIGSTRSGVST--EFTSGLCVS 47
           ++ TCVIG+T SG ST  + T+GL +S
Sbjct: 61  KKITCVIGTTGSGKSTMIQLTNGLLIS 87

>ENV_HV2RO (P04577) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 858

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 56  QTRREFCAHPRSRGTNHTRGLSWNKP 133
           + +     HPR RGTN TR +S+  P
Sbjct: 352 EVKETLAKHPRYRGTNDTRNISFAAP 377

>CBIO2_SPIKU (Q6XYZ3) Cobalt import ATP-binding protein cbiO 2|
          Length = 305

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 181 SSLVPYRATCC*LLNVWFVPRETTCVIGSTRSGVST 74
           S   PY  T    +NV   P + T +IGST SG ST
Sbjct: 28  SPKTPYEYTSLQDINVVIKPGKITAIIGSTGSGKST 63

>ENV_HV2G1 (P18040) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 851

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 56  QTRREFCAHPRSRGTNHTRGLSWNKP 133
           + ++    HPR +GTN T+ +++ KP
Sbjct: 341 EVKQTLIKHPRYKGTNDTKNINFTKP 366

>EXUT_BACSU (O34456) Hexuronate transporter|
          Length = 422

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 169 PYRATCC*LLNVWFVPRETTCVIGSTRSG 83
           P  AT   ++N WF P +   VIG T SG
Sbjct: 112 PLSATINKMVNNWFPPTQRASVIGVTNSG 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,021,116
Number of Sequences: 219361
Number of extensions: 696233
Number of successful extensions: 2004
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2004
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)