Clone Name | rbart08d10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185001 Score = 44.1 bits (22), Expect = 0.078 Identities = 25/26 (96%) Strand = Plus / Minus Query: 17 gaattgggcaatggccaagtaataac 42 |||||||| ||||||||||||||||| Sbjct: 107104 gaattgggaaatggccaagtaataac 107079
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 gaataacatgaattgggcaat 28 ||||||||||||||||||||| Sbjct: 3456573 gaataacatgaattgggcaat 3456553
>emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chromosome 11 Contains the 3' end of a novel gene, complete sequence Length = 203827 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ataacatgaattgggcaatg 29 |||||||||||||||||||| Sbjct: 54069 ataacatgaattgggcaatg 54088
>gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-926E7, complete sequence Length = 101311 Score = 38.2 bits (19), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 36 taataacatgaatttgctgaaca 58 ||||||||||||||| ||||||| Sbjct: 70567 taataacatgaatttactgaaca 70589
>gb|AC122519.4| Mus musculus BAC clone RP24-462C10 from chromosome 6, complete sequence Length = 138242 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 aataacatgaatttgctga 55 ||||||||||||||||||| Sbjct: 34019 aataacatgaatttgctga 34037
>gb|AC110378.4| Mus musculus BAC clone RP24-193H8 from 6, complete sequence Length = 166527 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 aataacatgaatttgctga 55 ||||||||||||||||||| Sbjct: 156488 aataacatgaatttgctga 156470
>gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, complete sequence Length = 208757 Score = 38.2 bits (19), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 25 caatggccaagtaataacatgaa 47 ||||||| ||||||||||||||| Sbjct: 71318 caatggctaagtaataacatgaa 71296
>emb|Z81008.1|HS369O24 Human DNA sequence from clone RP3-369O24 on chromosome X Contains part of the ODZ1 gene for odz, odd Oz/ten-m homolog 1(Drosophila), complete sequence Length = 110180 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 gtaataacatgaatttgct 53 ||||||||||||||||||| Sbjct: 65723 gtaataacatgaatttgct 65741
>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3 Contains part of the TNR gene for tenascin R (restrictin, janusin), a novel gene and one CpG island, complete sequence Length = 138636 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aggaataacatgaattggg 24 ||||||||||||||||||| Sbjct: 112632 aggaataacatgaattggg 112614
>gb|AC006518.17| Homo sapiens 12 BAC RPCI11-144O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173735 Score = 38.2 bits (19), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 aacaaaacctttgctaactgaat 77 |||||||||||||| |||||||| Sbjct: 143882 aacaaaacctttgcaaactgaat 143860
>gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, complete sequence Length = 177423 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ccaagtaataacatgaatt 49 ||||||||||||||||||| Sbjct: 160371 ccaagtaataacatgaatt 160389
>gb|AC105942.2| Homo sapiens chromosome 1 clone RP4-639F20, complete sequence Length = 116491 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 aacaattaacaatggccaa 105 ||||||||||||||||||| Sbjct: 64761 aacaattaacaatggccaa 64743
>ref|NG_005483.1| Homo sapiens ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G pseudogene 2 (ATP6V1GP2) on chromosome 8 Length = 1206 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ccaagtaataacatgaatt 49 ||||||||||||||||||| Sbjct: 141 ccaagtaataacatgaatt 159
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 acaattaacaatggccaat 106 ||||||||||||||||||| Sbjct: 10964054 acaattaacaatggccaat 10964072
>gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, complete sequence Length = 175802 Score = 38.2 bits (19), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 36 taataacatgaatttgctgaaca 58 ||||||||||||||| ||||||| Sbjct: 26907 taataacatgaatttactgaaca 26885
>gb|AC138681.3| Homo sapiens chromosome 8, clone RP13-41K17, complete sequence Length = 28800 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ccaagtaataacatgaatt 49 ||||||||||||||||||| Sbjct: 24959 ccaagtaataacatgaatt 24941
>dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0698G06 Length = 138282 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 acaattaacaatggccaat 106 ||||||||||||||||||| Sbjct: 103759 acaattaacaatggccaat 103777
>dbj|BS000056.1| Pan troglodytes chromosome 22 clone:RP43-138K13, map 22, complete sequences Length = 150136 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 gcaatggccaagtaataac 42 ||||||||||||||||||| Sbjct: 35348 gcaatggccaagtaataac 35330
>dbj|AP001677.1| Homo sapiens genomic DNA, chromosome 21q, section 21/105 Length = 340000 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 gcaatggccaagtaataac 42 ||||||||||||||||||| Sbjct: 171001 gcaatggccaagtaataac 170983
>gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete sequence Length = 181220 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 aataacatgaatttgctga 55 ||||||||||||||||||| Sbjct: 177867 aataacatgaatttgctga 177885
>dbj|AP000946.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B335N5, LL56-APP region, complete sequence Length = 137343 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 gcaatggccaagtaataac 42 ||||||||||||||||||| Sbjct: 54323 gcaatggccaagtaataac 54305 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,060,136 Number of Sequences: 3902068 Number of extensions: 1060136 Number of successful extensions: 95891 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95768 Number of HSP's gapped (non-prelim): 123 length of query: 107 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 86 effective length of database: 17,151,101,840 effective search space: 1474994758240 effective search space used: 1474994758240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)