ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cance... 44 0.078
2emb|CR628336.1| Legionella pneumophila str. Paris complete genome 42 0.31
3emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chro... 40 1.2
4gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CI... 38 4.8
5gb|AC122519.4| Mus musculus BAC clone RP24-462C10 from chromosom... 38 4.8
6gb|AC110378.4| Mus musculus BAC clone RP24-193H8 from 6, complet... 38 4.8
7gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, compl... 38 4.8
8emb|Z81008.1|HS369O24 Human DNA sequence from clone RP3-369O24 o... 38 4.8
9emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J... 38 4.8
10gb|AC006518.17| Homo sapiens 12 BAC RPCI11-144O23 (Roswell Park ... 38 4.8
11gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, co... 38 4.8
12gb|AC105942.2| Homo sapiens chromosome 1 clone RP4-639F20, compl... 38 4.8
13ref|NG_005483.1| Homo sapiens ATPase, H+ transporting, lysosomal... 38 4.8
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
15gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, comp... 38 4.8
16gb|AC138681.3| Homo sapiens chromosome 8, clone RP13-41K17, comp... 38 4.8
17dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
18dbj|BS000056.1| Pan troglodytes chromosome 22 clone:RP43-138K13,... 38 4.8
19dbj|AP001677.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 4.8
20gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete... 38 4.8
21dbj|AP000946.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 4.8

>gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 185001

 Score = 44.1 bits (22), Expect = 0.078
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 17     gaattgggcaatggccaagtaataac 42
              |||||||| |||||||||||||||||
Sbjct: 107104 gaattgggaaatggccaagtaataac 107079



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 8       gaataacatgaattgggcaat 28
               |||||||||||||||||||||
Sbjct: 3456573 gaataacatgaattgggcaat 3456553



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>emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chromosome 11 Contains the
             3' end of a novel gene, complete sequence
          Length = 203827

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    ataacatgaattgggcaatg 29
             ||||||||||||||||||||
Sbjct: 54069 ataacatgaattgggcaatg 54088



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>gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-926E7, complete
             sequence
          Length = 101311

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 36    taataacatgaatttgctgaaca 58
             ||||||||||||||| |||||||
Sbjct: 70567 taataacatgaatttactgaaca 70589



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>gb|AC122519.4| Mus musculus BAC clone RP24-462C10 from chromosome 6, complete sequence
          Length = 138242

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    aataacatgaatttgctga 55
             |||||||||||||||||||
Sbjct: 34019 aataacatgaatttgctga 34037



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>gb|AC110378.4| Mus musculus BAC clone RP24-193H8 from 6, complete sequence
          Length = 166527

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     aataacatgaatttgctga 55
              |||||||||||||||||||
Sbjct: 156488 aataacatgaatttgctga 156470



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>gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, complete sequence
          Length = 208757

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 25    caatggccaagtaataacatgaa 47
             ||||||| |||||||||||||||
Sbjct: 71318 caatggctaagtaataacatgaa 71296



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>emb|Z81008.1|HS369O24 Human DNA sequence from clone RP3-369O24 on chromosome X Contains part
             of the ODZ1 gene for odz, odd Oz/ten-m homolog
             1(Drosophila), complete sequence
          Length = 110180

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    gtaataacatgaatttgct 53
             |||||||||||||||||||
Sbjct: 65723 gtaataacatgaatttgct 65741



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>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3
              Contains part of the TNR gene for tenascin R (restrictin,
              janusin), a novel gene and one CpG island, complete
              sequence
          Length = 138636

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      aggaataacatgaattggg 24
              |||||||||||||||||||
Sbjct: 112632 aggaataacatgaattggg 112614



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>gb|AC006518.17| Homo sapiens 12 BAC RPCI11-144O23 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 173735

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 55     aacaaaacctttgctaactgaat 77
              |||||||||||||| ||||||||
Sbjct: 143882 aacaaaacctttgcaaactgaat 143860



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>gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, complete sequence
          Length = 177423

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     ccaagtaataacatgaatt 49
              |||||||||||||||||||
Sbjct: 160371 ccaagtaataacatgaatt 160389



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>gb|AC105942.2| Homo sapiens chromosome 1 clone RP4-639F20, complete sequence
          Length = 116491

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 87    aacaattaacaatggccaa 105
             |||||||||||||||||||
Sbjct: 64761 aacaattaacaatggccaa 64743



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>ref|NG_005483.1| Homo sapiens ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G
           pseudogene 2 (ATP6V1GP2) on chromosome 8
          Length = 1206

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  ccaagtaataacatgaatt 49
           |||||||||||||||||||
Sbjct: 141 ccaagtaataacatgaatt 159



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 88       acaattaacaatggccaat 106
                |||||||||||||||||||
Sbjct: 10964054 acaattaacaatggccaat 10964072



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>gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, complete sequence
          Length = 175802

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 36    taataacatgaatttgctgaaca 58
             ||||||||||||||| |||||||
Sbjct: 26907 taataacatgaatttactgaaca 26885



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>gb|AC138681.3| Homo sapiens chromosome 8, clone RP13-41K17, complete sequence
          Length = 28800

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    ccaagtaataacatgaatt 49
             |||||||||||||||||||
Sbjct: 24959 ccaagtaataacatgaatt 24941



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>dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0698G06
          Length = 138282

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 88     acaattaacaatggccaat 106
              |||||||||||||||||||
Sbjct: 103759 acaattaacaatggccaat 103777



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>dbj|BS000056.1| Pan troglodytes chromosome 22 clone:RP43-138K13, map 22, complete
             sequences
          Length = 150136

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    gcaatggccaagtaataac 42
             |||||||||||||||||||
Sbjct: 35348 gcaatggccaagtaataac 35330



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>dbj|AP001677.1| Homo sapiens genomic DNA, chromosome 21q, section 21/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     gcaatggccaagtaataac 42
              |||||||||||||||||||
Sbjct: 171001 gcaatggccaagtaataac 170983



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>gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete sequence
          Length = 181220

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     aataacatgaatttgctga 55
              |||||||||||||||||||
Sbjct: 177867 aataacatgaatttgctga 177885



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>dbj|AP000946.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B335N5,
             LL56-APP region, complete sequence
          Length = 137343

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    gcaatggccaagtaataac 42
             |||||||||||||||||||
Sbjct: 54323 gcaatggccaagtaataac 54305


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,060,136
Number of Sequences: 3902068
Number of extensions: 1060136
Number of successful extensions: 95891
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95768
Number of HSP's gapped (non-prelim): 123
length of query: 107
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 86
effective length of database: 17,151,101,840
effective search space: 1474994758240
effective search space used: 1474994758240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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