>SYIC_SCHPO (O13651) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
           (Isoleucine--tRNA ligase) (IleRS)
          Length = 1064

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +1

Query: 208 DTHTHMLAHNRPPDDAMRRTL*SILAHVMSCW*EPGDPRYHRRHLPIFAVVVIKH 372
           D H   + H   P    + TL  + + V  CW E G   Y  RH P   +   KH
Sbjct: 494 DIHRDSIDHITIPSKKGKGTLHRV-SEVFDCWFESGSMPYASRHYPFERIEEFKH 547

>RPA1_RAT (O54889) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
           (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1716

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 276 ASKRSPHCIIGRAVVRK 226
           A+KR PHC  GR+VVRK
Sbjct: 201 AAKRCPHCKTGRSVVRK 217

>ZG52_XENLA (P18727) Gastrula zinc finger protein XLCGF52.1 (Fragment)|
          Length = 223

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +2

Query: 131 LTNQETATPAPNQSCSPCMYTHMAI*T-HTHTCLRTTARPMM--QCGERFEASWRTSC-- 295
           L +Q + T     +CS C  T     T   H  + T  RP     CG+RF  S   +C  
Sbjct: 133 LKHQRSHTGEKPYACSECQKTFAHKTTLMVHERIHTGERPYECNDCGKRFIHSTNLNCHQ 192

Query: 296 --HAGESPGT 319
             H+GE P T
Sbjct: 193 KIHSGEKPFT 202

>LEU2_HELHP (Q7VH31) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 420

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +2

Query: 107 ELINKPLQLTNQETATPAPNQSCSPCMYTHMAI*THTHTCLRTTARPMM-QCGERFEASW 283
           E IN+    T  +        +C PC+  HM I      C+ TT R  + + G      +
Sbjct: 338 ECINRGYLETFIKAGAVVSTPTCGPCLGGHMGILAANEKCVSTTNRNFVGRMGHITSEVY 397

Query: 284 RTSCHAGESPGTHGIIAA 337
            +S     +    GI++A
Sbjct: 398 LSSPEVAAASAVRGILSA 415


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,400,278
Number of Sequences: 219361
Number of extensions: 1405538
Number of successful extensions: 3446
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3435
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)