Clone Name | rbart08d08 |
---|---|
Clone Library Name | barley_pub |
>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete cds Length = 1433 Score = 979 bits (494), Expect = 0.0 Identities = 494/494 (100%) Strand = Plus / Minus Query: 1 aatacaaacagccaggccttgtatataaagtttctaataatacaatctttcaagtgaacg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1315 aatacaaacagccaggccttgtatataaagtttctaataatacaatctttcaagtgaacg 1256 Query: 61 acaaaggtgtaattggtttattggaactcaaattccgtaacgaaacacagcaacgaatat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1255 acaaaggtgtaattggtttattggaactcaaattccgtaacgaaacacagcaacgaatat 1196 Query: 121 tgacgaacccacccaactatgagtatgctctggcaaattggtgatgtacgccaaacgcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1195 tgacgaacccacccaactatgagtatgctctggcaaattggtgatgtacgccaaacgcag 1136 Query: 181 ggaagtggccttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1135 ggaagtggccttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcct 1076 Query: 241 ccatgagcaccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1075 ccatgagcaccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttg 1016 Query: 301 cctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1015 cctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtca 956 Query: 361 ctgtcacctctgggttgatcaactccttcacgttctcagcaagttccagcatggtgaatt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 955 ctgtcacctctgggttgatcaactccttcacgttctcagcaagttccagcatggtgaatt 896 Query: 421 cacctgggttcccaatgttaatgggtccagtgttgtctccattcatcagcttcataagac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 895 cacctgggttcccaatgttaatgggtccagtgttgtctccattcatcagcttcataagac 836 Query: 481 cattgaccatatca 494 |||||||||||||| Sbjct: 835 cattgaccatatca 822
>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene) Length = 1562 Score = 363 bits (183), Expect = 4e-97 Identities = 273/303 (90%) Strand = Plus / Minus Query: 191 ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 250 ||||||||| | || ||||||||| |||| |||||||||||||| |||||||||||||| Sbjct: 1291 ttaggccttagtctccttgggcacagccaggcgctcccggaagtcatcctccatgagcac 1232 Query: 251 caagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgat 310 |||||||||||| || |||||||| |||||||| | ||||| ||||| ||||||||||| Sbjct: 1231 caagccgtcacgcagaacgaccttaggctcccaccccagaacttccttcgcctttgtgat 1172 Query: 311 gtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctc 370 ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 1171 gtctggcttcctctggcgaggatcatcaggagtgttctcggtcatcgtcactgtcacctc 1112 Query: 371 tgggttgatcaactccttcacgttctcagcaagttccagcatggtgaattcacctgggtt 430 ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1111 tgggttgatcaactctttcactttctcagcaagttccagcatggtaaattcacctgggtt 1052 Query: 431 cccaatgttaatgggtccagtgttgtctccattcatcagcttcataagaccattgaccat 490 || | ||||| ||||||||||||| ||||||||||||||| |||||||||| ||||| Sbjct: 1051 gcccaaattaatcggtccagtgttgtttccattcatcagcttaataagaccatcaaccat 992 Query: 491 atc 493 ||| Sbjct: 991 atc 989 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 38 taatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccg 97 |||||||||||||||| |||||||||| | |||| | |||||||||||||||||||||| Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360 Query: 98 taacgaaa 105 ||| |||| Sbjct: 1359 taatgaaa 1352
>gb|AY104952.1| Zea mays PCO092342 mRNA sequence Length = 1825 Score = 323 bits (163), Expect = 3e-85 Identities = 268/303 (88%) Strand = Plus / Minus Query: 191 ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 250 ||||||||||| ||||||||||| |||| ||||||||||| || |||||||||||||| Sbjct: 1535 ttaggccttggttttcttgggcacggccaggcgctcccggaaatcatcctccatgagcac 1476 Query: 251 caagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgat 310 ||||||||| ||||||| |||||||||||| | ||||| ||||||||||| ||||| Sbjct: 1475 caagccgtccttcaggacgatcttgggctcccaccctagaacttcctttgccttggtgat 1416 Query: 311 gtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctc 370 ||| |||||||||||||| || ||||||||||||||||| |||||||||||||| | || Sbjct: 1415 gtccggcttcctctggcggggatcatcaggagtgttctcggtcatcgtcactgttatatc 1356 Query: 371 tgggttgatcaactccttcacgttctcagcaagttccagcatggtgaattcacctgggtt 430 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1355 tgggttaatcaactccttcacattctcagcaagttccagcatggtgaattcacctgggtt 1296 Query: 431 cccaatgttaatgggtccagtgttgtctccattcatcagcttcataagaccattgaccat 490 ||| | |||||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| Sbjct: 1295 ccccaagttaatcggtccagtgttgtttccgttcatcagcctaataagaccatcaaccat 1236 Query: 491 atc 493 ||| Sbjct: 1235 atc 1233 Score = 54.0 bits (27), Expect = 4e-04 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 32 ttctaataatacaatctttcaag-tgaacgacaaaggtgtaattggtttattggaactca 90 ||||||| |||||||| |||||| ||| ||| ||||| || | ||||||||||||||| Sbjct: 1684 ttctaatgatacaatccttcaaggtgatcgaagaaggtatattccgtttattggaactca 1625 Query: 91 aattccgtaacgaaa 105 |||||||||| |||| Sbjct: 1624 aattccgtaatgaaa 1610
>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic acid decarboxylase, complete cds Length = 1053 Score = 295 bits (149), Expect = 7e-77 Identities = 239/269 (88%) Strand = Plus / Minus Query: 222 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 281 ||||||||||| || || ||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 1022 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 963 Query: 282 cagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcagga 341 || | | ||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||| Sbjct: 962 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 903 Query: 342 gtgttctcagtcatcgtcactgtcacctctgggttgatcaactccttcacgttctcagca 401 |||||||||||||| || || || |||||||||||||||||||||||||| ||||||||| Sbjct: 902 gtgttctcagtcattgtgacggtaacctctgggttgatcaactccttcacattctcagca 843 Query: 402 agttccagcatggtgaattcacctgggttcccaatgttaatgggtccagtgttgtctcca 461 ||||||||||||||||||||||||||||| || | ||||| |||||||||||||| || Sbjct: 842 agttccagcatggtgaattcacctgggtttcccaaattaattggtccagtgttgtccccg 783 Query: 462 ttcatcagcttcataagaccattgaccat 490 ||||||||||| ||||||||||| ||||| Sbjct: 782 ttcatcagcttaataagaccattaaccat 754
>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full insert sequence Length = 1811 Score = 295 bits (149), Expect = 7e-77 Identities = 263/301 (87%) Strand = Plus / Minus Query: 190 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 249 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 1542 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1483 Query: 250 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 309 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 1482 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 1423 Query: 310 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 369 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 1422 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 1363 Query: 370 ctgggttgatcaactccttcacgttctcagcaagttccagcatggtgaattcacctgggt 429 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1362 ctgggttgatcaactccttcacattctcagcaagttccagcatggtgaattcacctgggt 1303 Query: 430 tcccaatgttaatgggtccagtgttgtctccattcatcagcttcataagaccattgacca 489 | || | ||||| |||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 1302 ttcccaaattaattggtccagtgttgtccccgttcatcagcttaataagaccattaacca 1243 Query: 490 t 490 | Sbjct: 1242 t 1242 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 32 ttctaataatacaatctttcaagtgaacgacaaaggtgta 71 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 1692 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1653
>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full insert sequence Length = 1411 Score = 295 bits (149), Expect = 7e-77 Identities = 263/301 (87%) Strand = Plus / Minus Query: 190 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 249 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 1153 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1094 Query: 250 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 309 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 1093 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 1034 Query: 310 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 369 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 1033 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 974 Query: 370 ctgggttgatcaactccttcacgttctcagcaagttccagcatggtgaattcacctgggt 429 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 973 ctgggttgatcaactccttcacattctcagcaagttccagcatggtgaattcacctgggt 914 Query: 430 tcccaatgttaatgggtccagtgttgtctccattcatcagcttcataagaccattgacca 489 | || | ||||| |||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 913 ttcccaaattaattggtccagtgttgtccccgttcatcagcttaataagaccattaacca 854 Query: 490 t 490 | Sbjct: 853 t 853 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 32 ttctaataatacaatctttcaagtgaacgacaaaggtgta 71 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 1303 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1264
>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence Length = 958 Score = 291 bits (147), Expect = 1e-75 Identities = 240/271 (88%) Strand = Plus / Minus Query: 223 gctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctccc 282 |||||||||| || ||||||||||||||||||||||| | |||| || |||||||||| Sbjct: 787 gctcccggaaatcatcctccatgagcaccaagccgtcccccaggaagattttgggctccc 728 Query: 283 agtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggag 342 | | | ||| ||||| |||||||||| || ||||||||||| || ||||||||||||| Sbjct: 727 atcccaaaacttccttcccctttgtgatatccggcttcctctgacgggggtcatcaggag 668 Query: 343 tgttctcagtcatcgtcactgtcacctctgggttgatcaactccttcacgttctcagcaa 402 ||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 667 tgttctcggtcattgtcactgtcacatctgggttgatcaactccttcacattctcagcaa 608 Query: 403 gttccagcatggtgaattcacctgggttcccaatgttaatgggtccagtgttgtctccat 462 ||||||||||||||||||||||||||||||| | |||||| |||||||| |||| ||||| Sbjct: 607 gttccagcatggtgaattcacctgggttccccaagttaatcggtccagtcttgtttccat 548 Query: 463 tcatcagcttcataagaccattgaccatatc 493 |||||||||| |||||||||| |||||||| Sbjct: 547 tcatcagcttaataagaccatcaaccatatc 517 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 81 ttggaactcaaattccgtaacgaaa 105 |||||||||||||||||||| |||| Sbjct: 921 ttggaactcaaattccgtaatgaaa 897
>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full insert sequence Length = 472 Score = 180 bits (91), Expect = 3e-42 Identities = 178/207 (85%) Strand = Plus / Minus Query: 190 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 249 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 207 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 148 Query: 250 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 309 ||||||| ||||| || |||| | |||||||||| | | |||||||||||||||||| | Sbjct: 147 ccaagccatcacgcagaacgatcctgggctcccaccccaaaacctcctttgcctttgtaa 88 Query: 310 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 369 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 87 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 28 Query: 370 ctgggttgatcaactccttcacgttct 396 |||||||||||||||||||||| |||| Sbjct: 27 ctgggttgatcaactccttcacattct 1 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 32 ttctaataatacaatctttcaagtgaacgacaaaggtgta 71 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 357 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 318
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 190 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 249 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 9412292 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9412233 Query: 250 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 309 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 9412232 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 9412173 Query: 310 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 369 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 9412172 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 9412113 Query: 370 ctgggttgatcaact 384 ||||||||||||||| Sbjct: 9412112 ctgggttgatcaact 9412098 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 383 ctccttcacgttctcagcaagttccagcatggtgaattcacct 425 ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 9412015 ctccttcacattctcagcaagttccagcatggtgaattcacct 9411973 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 438 ttaatgggtccagtgttgtctccattcatcagcttcataagaccatt 484 ||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 9411835 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 9411789 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 32 ttctaataatacaatctttcaagtgaacgacaaaggtgta 71 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 9412442 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9412403
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 190 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 249 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 109692 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 109633 Query: 250 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 309 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 109632 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 109573 Query: 310 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 369 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 109572 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 109513 Query: 370 ctgggttgatcaact 384 ||||||||||||||| Sbjct: 109512 ctgggttgatcaact 109498 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 383 ctccttcacgttctcagcaagttccagcatggtgaattcacct 425 ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 109415 ctccttcacattctcagcaagttccagcatggtgaattcacct 109373 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 438 ttaatgggtccagtgttgtctccattcatcagcttcataagaccatt 484 ||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 109235 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 109189 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 32 ttctaataatacaatctttcaagtgaacgacaaaggtgta 71 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 109842 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 109803
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 190 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 249 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 9410413 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9410354 Query: 250 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 309 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 9410353 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 9410294 Query: 310 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 369 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 9410293 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 9410234 Query: 370 ctgggttgatcaact 384 ||||||||||||||| Sbjct: 9410233 ctgggttgatcaact 9410219 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 383 ctccttcacgttctcagcaagttccagcatggtgaattcacct 425 ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 9410136 ctccttcacattctcagcaagttccagcatggtgaattcacct 9410094 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 438 ttaatgggtccagtgttgtctccattcatcagcttcataagaccatt 484 ||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 9409956 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 9409910 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 32 ttctaataatacaatctttcaagtgaacgacaaaggtgta 71 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 9410563 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9410524
>gb|AY619950.1| Nicotiana tabacum UDP-glucuronate decarboxylase 1 mRNA, complete cds Length = 1279 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 383 ctccttcacgttctcagcaagttccagcatggtgaattcacctgggttcccaatgttaat 442 ||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||||||| Sbjct: 878 ctccttcacattctccgcgagttcaatcatcgtgaattcacctggatttccaatgttaat 819 Query: 443 gggtccagtgttgtctcc 460 ||||||||||| ||||| Sbjct: 818 tggtccagtgttatctcc 801 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 297 tttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgtt 346 ||||||||||||||||| || || ||||| ||||| ||||| |||||||| Sbjct: 964 tttgcctttgtgatgtccggttttctctgccgaggatcatctggagtgtt 915
>gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucose 4-6-dehydratase homolog mRNA, partial cds Length = 1012 Score = 73.8 bits (37), Expect = 5e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 294 tcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 ||||| || ||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 702 tccttcgcttttgtgatgtcaggcttcctctggcgaggatcatccggcgtgttctca 646 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 383 ctccttcacgttctcagcaagttccagcatggtgaattcacctgggttcccaatgttaat 442 ||||||||| ||||| ||||| || | ||| || ||||||||||| || |||||||| || Sbjct: 613 ctccttcacattctcggcaagctcgatcattgtaaattcacctggatttccaatgttgat 554 Query: 443 gggtccagtgttgtctcc 460 ||||||||||||||||| Sbjct: 553 cggtccagtgttgtctcc 536
>emb|AJ275318.1|CAR275318 Cicer arietinum mRNA for dTDP-glucose 4-6-dehydratase Length = 1356 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 383 ctccttcacgttctcagcaagttccagcatggtgaattcacctgggttcccaa 435 ||||||||| ||||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 913 ctccttcactgtctcagcaagttcaagcattgtgaattcacctgggtttccaa 861
>gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) mRNA, complete cds Length = 1129 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 295 cctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctc 349 ||||||||||||| |||||||| |||||||| || || ||||||||||| ||||| Sbjct: 981 cctttgcctttgtaatgtcaggtttcctctgtcgtggatcatcaggagtattctc 927 Score = 60.0 bits (30), Expect = 7e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 383 ctccttcacgttctcagcaagttccagcatggtgaattcacctgggttcccaatgttaat 442 ||||||||| |||||||||| || |||||| ||||| |||||||| |||||||| || Sbjct: 893 ctccttcactgtctcagcaagctcggtcatggtaaattcccctgggtttccaatgttgat 834 Query: 443 gggtccagtgttgtctcc 460 ||||||||||| ||||| Sbjct: 833 tggtccagtgttctctcc 816
>dbj|AB059568.1| Pisum sativum uxs1 mRNA for UDP-D-glucuronate carboxy-lyase, complete cds Length = 1406 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 383 ctccttcacgttctcagcaagttccagcatggtgaattcacctgggttcccaa 435 ||||||||| ||||||||||||| ||||| ||||||||||| ||||| |||| Sbjct: 973 ctccttcactgtctcagcaagttcaagcatagtgaattcacccgggtttccaa 921
>ref|NM_190499.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1173 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 gcaagttccagcatggtgaattcacctgggtt 430 |||||||||| |||||||||||| |||||||| Sbjct: 980 gcaagttccaacatggtgaattctcctgggtt 949
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 gcaagttccagcatggtgaattcacctgggtt 430 |||||||||| |||||||||||| |||||||| Sbjct: 35893238 gcaagttccaacatggtgaattctcctgggtt 35893207
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 gcaagttccagcatggtgaattcacctgggtt 430 |||||||||| |||||||||||| |||||||| Sbjct: 157696 gcaagttccaacatggtgaattctcctgggtt 157665
>dbj|AB079063.2| Oryza sativa (japonica cultivar-group) UXS-4 mRNA for UDP-glucuronic acid decarboxylase, complete cds Length = 1404 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 gcaagttccagcatggtgaattcacctgggtt 430 |||||||||| |||||||||||| |||||||| Sbjct: 1040 gcaagttccaacatggtgaattctcctgggtt 1009
>dbj|AK104675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-H12, full insert sequence Length = 805 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 gcaagttccagcatggtgaattcacctgggtt 430 |||||||||| |||||||||||| |||||||| Sbjct: 281 gcaagttccaacatggtgaattctcctgggtt 250
>dbj|AK069181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008F13, full insert sequence Length = 2387 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 gcaagttccagcatggtgaattcacctgggtt 430 |||||||||| |||||||||||| |||||||| Sbjct: 1858 gcaagttccaacatggtgaattctcctgggtt 1827
>ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript variant AT3G46440.1 mRNA, complete cds Length = 1374 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 1051 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1001
>ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript variant AT3G46440.2 mRNA, complete cds Length = 1464 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 1141 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1091
>ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 mRNA, complete cds Length = 1063 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 966 gcctttgtgatgtcaggctttctcttgtgagggtc 1000
>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2); catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2) mRNA, complete cds Length = 1338 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159
>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds Length = 1338 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159
>gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratases (At3g46440) mRNA, complete cds Length = 1057 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 926 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 876
>gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratase (At3g46440) mRNA, complete cds Length = 1356 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 1051 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1001
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9 Length = 110257 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 88182 gcctttgtgatgtcaggctttctcttgtgagggtc 88148
>emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, BAC clone F18L15 Length = 100328 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 75554 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 75604
>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds Length = 1663 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 1346 gcctttgtgatgtcaggctttctcttgtgagggtc 1312
>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds Length = 1701 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 1346 gcctttgtgatgtcaggctttctcttgtgagggtc 1312
>emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS6ZC01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1114 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 876 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 826
>emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZD03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1211 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 950 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 900
>emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB50ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 451 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 92 gcctttgtgatgtcaggctttctcttgtgagggtc 58
>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 923 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 564 gcctttgtgatgtcaggctttctcttgtgagggtc 530
>gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, complete sequence Length = 1281 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 350 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 987 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 937
>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA, complete cds Length = 1338 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159
>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases Length = 1660 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtc 334 |||||||||||||||||||| |||| | ||||||| Sbjct: 1332 gcctttgtgatgtcaggctttctcttgtgagggtc 1298
>ref|NM_130333.1| Arabidopsis thaliana UXS4 (UDP-XYLOSE SYNTHASE 4); catalytic AT2G47650 (UXS4) mRNA, complete cds Length = 1529 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 408 agcatggtgaattcacctgggttcccaatgttaa 441 ||||||||||||||||| ||||| |||| ||||| Sbjct: 1184 agcatggtgaattcaccggggttaccaaggttaa 1151
>ref|NM_125319.2| Arabidopsis thaliana UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE); catalytic AT5G59290 (UXS3) mRNA, complete cds Length = 1459 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Minus Query: 394 tctcagcaagttccagcatggtgaattcacctgggttcccaatgtt 439 ||||||| ||||||| ||| ||||| ||||||||||| || ||||| Sbjct: 981 tctcagccagttccaccattgtgaactcacctgggttaccgatgtt 936
>gb|AY922314.1| Populus tomentosa UDP-glucuronic acid decarboxylase 2 (UXS2) mRNA, complete cds Length = 1466 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 398 agcaagttccagcatggtgaattcacctgg 427 |||||| || |||||||||||||||||||| Sbjct: 1201 agcaagctcgagcatggtgaattcacctgg 1172
>gb|AC152937.21| Medicago truncatula clone mth2-96n6, complete sequence Length = 108802 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 399 gcaagttccagcatggtgaattcacc 424 ||||||||||||||||| |||||||| Sbjct: 40939 gcaagttccagcatggtaaattcacc 40964
>emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome; segment 6/7 Length = 348071 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 414 gtgaattcacctgggttcccaatgttaatgggtccagt 451 |||||||||| ||||| || ||||||||||||||||| Sbjct: 325162 gtgaattcactggggttgccgatgttaatgggtccagt 325125
>gb|AY093958.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRNA, complete cds Length = 1029 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Minus Query: 394 tctcagcaagttccagcatggtgaattcacctgggttcccaatgtt 439 ||||||| ||||||| ||| ||||| ||||||||||| || ||||| Sbjct: 835 tctcagccagttccaccattgtgaactcacctgggttaccgatgtt 790
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 408 agcatggtgaattcacctgggttcccaatgttaa 441 ||||||||||||||||| ||||| |||| ||||| Sbjct: 6513 agcatggtgaattcaccggggttaccaaggttaa 6546
>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence Length = 98937 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 408 agcatggtgaattcacctgggttcccaatgttaa 441 ||||||||||||||||| ||||| |||| ||||| Sbjct: 9563 agcatggtgaattcaccggggttaccaaggttaa 9530
>gb|AF375442.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRNA, complete cds Length = 1364 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Minus Query: 394 tctcagcaagttccagcatggtgaattcacctgggttcccaatgtt 439 ||||||| ||||||| ||| ||||| ||||||||||| || ||||| Sbjct: 925 tctcagccagttccaccattgtgaactcacctgggttaccgatgtt 880
>emb|BX832416.1|CNS0A12Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZD04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1303 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Minus Query: 394 tctcagcaagttccagcatggtgaattcacctgggttcccaatgtt 439 ||||||| ||||||| ||| ||||| ||||||||||| || ||||| Sbjct: 907 tctcagccagttccaccattgtgaactcacctgggttaccgatgtt 862
>gb|BT022016.1| Arabidopsis thaliana At2g47650 gene, complete cds Length = 1480 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 408 agcatggtgaattcacctgggttcccaatgttaa 441 ||||||||||||||||| ||||| |||| ||||| Sbjct: 1103 agcatggtgaattcaccggggttaccaaggttaa 1070
>gb|AY088443.1| Arabidopsis thaliana clone 6701 mRNA, complete sequence Length = 1418 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Minus Query: 394 tctcagcaagttccagcatggtgaattcacctgggttcccaatgtt 439 ||||||| ||||||| ||| ||||| ||||||||||| || ||||| Sbjct: 981 tctcagccagttccaccattgtgaactcacctgggttaccgatgtt 936
>gb|AF387789.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS3) mRNA, complete cds Length = 1029 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Minus Query: 394 tctcagcaagttccagcatggtgaattcacctgggttcccaatgtt 439 ||||||| ||||||| ||| ||||| ||||||||||| || ||||| Sbjct: 835 tctcagccagttccaccattgtgaactcacctgggttaccgatgtt 790
>gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH015H17, complete sequence Length = 110885 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatc 337 |||||||| ||||||||||| |||| | |||||||||| Sbjct: 19871 gcctttgtaatgtcaggctttctcttgtgagggtcatc 19834
>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence Length = 118144 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttcctctggcgagggtcatc 337 |||||||| ||||||||||| |||| | |||||||||| Sbjct: 106049 gcctttgtaatgtcaggctttctcttgtgagggtcatc 106012
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence Length = 255062 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 gcctttgtgatgtcaggcttc 320 ||||||||||||||||||||| Sbjct: 163613 gcctttgtgatgtcaggcttc 163593
>gb|AY429442.1| Gossypium barbadense fiber dTDP-glucose 4-6-dehydratase mRNA, partial cds Length = 872 Score = 42.1 bits (21), Expect = 1.7 Identities = 51/61 (83%) Strand = Plus / Minus Query: 394 tctcagcaagttccagcatggtgaattcacctgggttcccaatgttaatgggtccagtgt 453 |||| ||||| || |||||||| ||||||||||| ||||| || || || || ||||||| Sbjct: 350 tctcggcaagctcaagcatggtaaattcacctggattcccgatattgattggaccagtgt 291 Query: 454 t 454 | Sbjct: 290 t 290
>gb|AY677178.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS2) mRNA, complete cds Length = 1380 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 402 agttccagcatggtgaattcacctgggtt 430 ||||||||||||||||| ||||| ||||| Sbjct: 974 agttccagcatggtgaactcaccggggtt 946
>gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence Length = 35325 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aaagtttctaataatacaat 46 |||||||||||||||||||| Sbjct: 20319 aaagtttctaataatacaat 20300
>gb|AC125125.4| Mus musculus BAC clone RP24-274E6 from chromosome 8, complete sequence Length = 180801 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 gatcaactccttcacgttct 396 |||||||||||||||||||| Sbjct: 157934 gatcaactccttcacgttct 157915
>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G) and a novel gene, complete sequence Length = 145136 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aaagtttctaataatacaat 46 |||||||||||||||||||| Sbjct: 103537 aaagtttctaataatacaat 103518
>emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 in linkage group 18, complete sequence Length = 149493 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 taaagtttctaataatacaa 45 |||||||||||||||||||| Sbjct: 107638 taaagtttctaataatacaa 107657
>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence Length = 167258 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 agcttcataagaccattgac 487 |||||||||||||||||||| Sbjct: 166392 agcttcataagaccattgac 166411
>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence Length = 195101 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tatataaagtttctaataat 41 |||||||||||||||||||| Sbjct: 13115 tatataaagtttctaataat 13096
>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence Length = 169944 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 agcttcataagaccattgac 487 |||||||||||||||||||| Sbjct: 68254 agcttcataagaccattgac 68273
>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207228 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gacaaaggtgtaattggttt 79 |||||||||||||||||||| Sbjct: 337 gacaaaggtgtaattggttt 318
>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete sequence Length = 193884 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ttggccttcttgggcactgc 217 |||||||||||||||||||| Sbjct: 153079 ttggccttcttgggcactgc 153098
>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 135177 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gacaaaggtgtaattggttt 79 |||||||||||||||||||| Sbjct: 76946 gacaaaggtgtaattggttt 76927
>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18, complete sequence Length = 176163 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 taaagtttctaataatacaa 45 |||||||||||||||||||| Sbjct: 165685 taaagtttctaataatacaa 165666
>gb|AY108129.1| Zea mays PCO069672 mRNA sequence Length = 984 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ttgggctcccagtcaagaac 292 |||||||||||||||||||| Sbjct: 623 ttgggctcccagtcaagaac 604
>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete sequence Length = 231197 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tatgagtatgctctggcaaa 157 |||||||||||||||||||| Sbjct: 208325 tatgagtatgctctggcaaa 208306
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 agttccagcatggtgaattc 421 |||||||||||||||||||| Sbjct: 372396 agttccagcatggtgaattc 372377
>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete sequence Length = 159617 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ttggccttcttgggcactgc 217 |||||||||||||||||||| Sbjct: 53068 ttggccttcttgggcactgc 53049
>gb|M15265.1|CUCPHT Cucurbita pepo (zucchini) phytochrome mRNA, complete cds Length = 3574 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 gtctccattcatcagcttca 474 |||||||||||||||||||| Sbjct: 3434 gtctccattcatcagcttca 3415 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,008,465 Number of Sequences: 3902068 Number of extensions: 4008465 Number of successful extensions: 74278 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74051 Number of HSP's gapped (non-prelim): 226 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)