>Y326_METJA (Q57772) Hypothetical protein MJ0326|
          Length = 436

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/50 (54%), Positives = 34/50 (68%)
 Frame = -2

Query: 510 VGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVYVAL 361
           VGA+MMR  K I++ D  EAIPAF+T+  +PLTFSIA G+  G   Y  L
Sbjct: 357 VGALMMRSVKYIDFDDYTEAIPAFITLLTIPLTFSIATGLALGFITYPIL 406

>YICO_ECOLI (P31440) Inner membrane protein yicO|
          Length = 470

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -2

Query: 510 VGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVY 370
           VG +M      + W D  E++PAF+T  +MP TFSI  GI  G   Y
Sbjct: 392 VGVLMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSY 438

>YIEG_ECOLI (P31466) Inner membrane protein yieG|
          Length = 445

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -2

Query: 510 VGAMMMRVAKEIEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVYVAL 361
           VG +M      + W D+ E++PAF+T  +MP +FSI  GI  G   Y  +
Sbjct: 365 VGVLMTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGFISYCVM 414

>Y1384_MYCBO (P63394) Hypothetical ABC transporter ATP-binding protein Mb1384|
          Length = 579

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
 Frame = -2

Query: 450 IPAFVTMALMPLTFSIANGIIAGLGVYVALHWYD-----WASLACDKVGKALDDR----- 301
           +PA + +AL+P+++ +    +AG+ + +   W        A  A DK   AL +R     
Sbjct: 141 LPAVIALALLPISWQLGVAALAGVPLLLGALWASAAFARRADTAADKANTALTERIIEFA 200

Query: 300 RNQVAAATPEVIGPAQDAV 244
           R Q A      + PA+  V
Sbjct: 201 RTQQALRAARRVEPARSLV 219

>Y1349_MYCTU (P63393) Hypothetical ABC transporter ATP-binding protein|
           Rv1349/MT1392
          Length = 579

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
 Frame = -2

Query: 450 IPAFVTMALMPLTFSIANGIIAGLGVYVALHWYD-----WASLACDKVGKALDDR----- 301
           +PA + +AL+P+++ +    +AG+ + +   W        A  A DK   AL +R     
Sbjct: 141 LPAVIALALLPISWQLGVAALAGVPLLLGALWASAAFARRADTAADKANTALTERIIEFA 200

Query: 300 RNQVAAATPEVIGPAQDAV 244
           R Q A      + PA+  V
Sbjct: 201 RTQQALRAARRVEPARSLV 219

>ICAM5_RABIT (Q28730) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 912

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 290 TWLRRSSSAFPTLSHARLAQSYQCSAT*TPRPAMMPLAMEKVSGMSAMVTNA 445
           TWL  + +A P  +  R +   +CS    PRPA   ++ E       + TNA
Sbjct: 671 TWLEGAEAAGPACARGRPSPRVRCSREGAPRPARPRVSREDAGTYLCVATNA 722

>RBS1_FRIAG (O24634) Ribulose bisphosphate carboxylase small chain 1/4,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 1/4)
          Length = 179

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 209 LARDSSILTAAHTASCAGPMTSGVAAATWLRRSSSAFP 322
           +A  S++L++  TA+CA P  + + A     +S+SAFP
Sbjct: 1   MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFP 38

>LEPA_BACFR (Q64T74) GTP-binding protein lepA|
          Length = 593

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 250 VLRGSDDLRRGSGDLVAAVVERLPHLVAREAGPV 351
           ++R S     G  +++AAV+ER+PH    E+ P+
Sbjct: 155 IIRASGKTGMGVEEILAAVIERIPHPQGDESAPL 188

>LEPA_BACFN (Q5LC85) GTP-binding protein lepA|
          Length = 593

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 250 VLRGSDDLRRGSGDLVAAVVERLPHLVAREAGPV 351
           ++R S     G  +++AAV+ER+PH    E+ P+
Sbjct: 155 IIRASGKTGMGVEEILAAVIERIPHPQGDESAPL 188

>EMBA_MYCAV (P71485) Probable arabinosyltransferase A (EC 2.4.2.-)|
          Length = 1108

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -2

Query: 477 IEWGDMKEAIPAFVTMALMPLTFSIANGIIAGLGVYVALHWYDWASLACDKVG--KALDD 304
           + W D++  I +    ++  LT SI  G++A            W     D  G  +  D 
Sbjct: 644 VPWYDIQPVIASHPVTSMF-LTLSIITGLLAA-----------WQHFRMDYAGHTEVKDS 691

Query: 303 RRNQVAAATPEVI 265
           RRN+V A+TP ++
Sbjct: 692 RRNRVLASTPLLV 704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,479,433
Number of Sequences: 219361
Number of extensions: 955303
Number of successful extensions: 3127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3127
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)