ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart08d03 |
|---|---|
| Clone Library Name | barley_pub |
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 167 bits (422), Expect = 2e-41 Identities = 85/119 (71%), Positives = 94/119 (78%) Frame = -1 Query: 546 KPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQ 367 KPRMRGPKRASKI+KLFNLGK+DDVR YVNTYRRTF NKKGKKVSKAPKIQRLVTPLTLQ Sbjct: 131 KPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQ 190 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVS 190 S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS+A P + Sbjct: 191 RKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLSSAPAKPVAA 249
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 164 bits (415), Expect = 2e-40 Identities = 84/120 (70%), Positives = 96/120 (80%) Frame = -1 Query: 546 KPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQ 367 KPRMRGPKRASKI+KLFNL K+DDVR+YVNTYRR F NKKGK+VSKAPKIQRLVTPLTLQ Sbjct: 131 KPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQ 190 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA 187 S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS+A P+V+A Sbjct: 191 RKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLSSAAAKPSVTA 250
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 164 bits (414), Expect = 2e-40 Identities = 89/121 (73%), Positives = 95/121 (78%), Gaps = 1/121 (0%) Frame = -1 Query: 546 KPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQ 367 KPRMRGPKRASKI+KLFNL K+DDVR YVNTYRRTF NKKGK SKAPKIQRLVTPLTLQ Sbjct: 131 KPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQ 190 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS-AATKAPAVS 190 KSEAAEYQKLLA RLKEQRDRRSES+AK+RS+LS AA K +VS Sbjct: 191 RKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLSAAAAKTASVS 250 Query: 189 A 187 A Sbjct: 251 A 251
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 114 bits (284), Expect = 2e-25 Identities = 68/120 (56%), Positives = 82/120 (68%) Frame = -1 Query: 546 KPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQ 367 KPRMRGP+ + + L+ K+DDVR YVNT KG SKAPKIQRLVTPLTLQ Sbjct: 86 KPRMRGPREPQRSEALYF--KEDDVRKYVNTTAEFTTKWKG---SKAPKIQRLVTPLTLQ 140 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA 187 KSEAAEYQKLLA RLKEQR++RSES+AK+RS+LSAA+K P+++A Sbjct: 141 RKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRLSAASK-PSIAA 199
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 104 bits (259), Expect = 2e-22 Identities = 64/115 (55%), Positives = 76/115 (66%), Gaps = 3/115 (2%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRAS+I+KLFNL K+DDVR YV R LNK+GKK +KAPKIQRLVTP LQ Sbjct: 130 PRRLGPKRASRIRKLFNLSKEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQ 186 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 208 K EAAEY KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 187 HKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 104 bits (259), Expect = 2e-22 Identities = 64/115 (55%), Positives = 76/115 (66%), Gaps = 3/115 (2%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRAS+I+KLFNL K+DDVR YV R LNK+GKK +KAPKIQRLVTP LQ Sbjct: 130 PRRLGPKRASRIRKLFNLSKEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQ 186 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 208 K EAAEY KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 187 HKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 104 bits (259), Expect = 2e-22 Identities = 64/115 (55%), Positives = 76/115 (66%), Gaps = 3/115 (2%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRAS+I+KLFNL K+DDVR YV R LNK+GKK +KAPKIQRLVTP LQ Sbjct: 130 PRRLGPKRASRIRKLFNLSKEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQ 186 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 208 K EAAEY KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 187 HKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 103 bits (256), Expect = 4e-22 Identities = 63/115 (54%), Positives = 76/115 (66%), Gaps = 3/115 (2%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRAS+I+KLFNL K+DDVR YV R LNK+GKK +KAPKIQRLVTP LQ Sbjct: 130 PRRLGPKRASRIRKLFNLSKEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQ 186 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 208 K EAA+Y KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 187 HKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 101 bits (251), Expect = 2e-21 Identities = 60/106 (56%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRAS+I+KLFNL K+DDVR YV R L K+GKK +KAPKIQRLVTP LQ Sbjct: 130 PRRLGPKRASRIRKLFNLSKEDDVRQYVV---RRPLTKEGKKPRTKAPKIQRLVTPRVLQ 186 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 229 K EAAEY KLLA+RLKE +++R E +AKRR Sbjct: 187 HKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 100 bits (250), Expect = 2e-21 Identities = 62/115 (53%), Positives = 75/115 (65%), Gaps = 3/115 (2%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRASKI+KLFNL K+DDVR YV R L K+GKK +KAP+IQRLVTP LQ Sbjct: 130 PRRLGPKRASKIRKLFNLAKEDDVRQYVV---RRPLTKEGKKPRTKAPRIQRLVTPRVLQ 186 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 208 K EA+EY KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 187 HKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 98.6 bits (244), Expect = 1e-20 Identities = 62/115 (53%), Positives = 74/115 (64%), Gaps = 3/115 (2%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRAS+I+KLFNL K+DDVR YV R L K+GKK +KAPKIQRLVTP LQ Sbjct: 130 PRRLGPKRASRIRKLFNLSKEDDVRQYVV---RKPLAKEGKKPRTKAPKIQRLVTPRVLQ 186 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 208 K EA+EY KLLA+R KE +++R E +AKRR S L A+T Sbjct: 187 HKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 95.5 bits (236), Expect = 9e-20 Identities = 57/109 (52%), Positives = 68/109 (62%), Gaps = 2/109 (1%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRASKI+KLFNL K+DDVR YV RR + GKK SKAPKIQRLVTP+ LQ Sbjct: 130 PRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQ 187 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSE-SMAKRRSK 223 + + AEY KLLAQR+KE ++R+ E + RSK Sbjct: 188 RKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKMERKRSNSRSK 236
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 92.4 bits (228), Expect = 7e-19 Identities = 59/123 (47%), Positives = 72/123 (58%), Gaps = 4/123 (3%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSK----APKIQRLVTPL 376 PR GPKRASKI+KLFNL K+DDVR YV + K+GK+ +K APKIQRLVTP+ Sbjct: 130 PRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPV 187 Query: 375 TLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPA 196 LQ KS A+Y KLLAQR KE + RR E + +RRS +K+ Sbjct: 188 VLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRSASMRDSKSSN 247 Query: 195 VSA 187 SA Sbjct: 248 QSA 250
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 91.7 bits (226), Expect = 1e-18 Identities = 58/123 (47%), Positives = 71/123 (57%), Gaps = 4/123 (3%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS----KAPKIQRLVTPL 376 PR GPKRASKI+KLFNL K+DDVR YV +R K+GK+ + KAPKIQRLVTP+ Sbjct: 130 PRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPV 187 Query: 375 TLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPA 196 LQ K +Y KLLAQR KE + RR E + +RRS +K+ Sbjct: 188 VLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRSASMRDSKSSD 247 Query: 195 VSA 187 SA Sbjct: 248 KSA 250
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 89.7 bits (221), Expect = 5e-18 Identities = 57/120 (47%), Positives = 69/120 (57%), Gaps = 1/120 (0%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRASKI+KL+NL K+DDVR +V RR K KK SKAPKIQRL+TP+ LQ Sbjct: 130 PRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQ 187 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA 187 K +A+Y KLL QR KE + +R E AKRR S +VS+ Sbjct: 188 RKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREE--AKRRRSASIRESKSSVSS 245
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 86.7 bits (213), Expect = 4e-17 Identities = 49/108 (45%), Positives = 62/108 (57%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 PR GPKRA+ I+KLF L K+DDVR YV RR K GK +KAPKIQRL+TP L Sbjct: 130 PRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAH 187 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 220 K AAEY +LLA+R+ E++ ++E +R S L Sbjct: 188 KAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235
>RS6A_SCHPO (P05752) 40S ribosomal protein S6-A| Length = 239 Score = 86.3 bits (212), Expect = 5e-17 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKK-VSKAPKIQRLVTPLTLQ 367 P+ GPKRASKI++ FNL K+DDVR +V R K+GKK +KAPKIQRLVTP TLQ Sbjct: 130 PKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQ 188 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 220 + EAAE+ +L+A+R+ E + +R A+R S L Sbjct: 189 HKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVKARRASSL 237
>RS6_BRAFL (O01727) 40S ribosomal protein S6| Length = 244 Score = 86.3 bits (212), Expect = 5e-17 Identities = 54/107 (50%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS-KAPKIQRLVTPLTLQ 367 PR GPKRA +I+KLFNL K+DDVR YV RR K+GKK K PKIQRL+TP LQ Sbjct: 130 PRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQ 187 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRS 226 + E A Y KLLA+R KE+R E+ AKRRS Sbjct: 188 RKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEER----EAHAKRRS 230
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 85.9 bits (211), Expect = 7e-17 Identities = 52/110 (47%), Positives = 65/110 (59%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 P+ GPKRA+ I+K F L K+DDVR +V RR + K KK +KAPKIQRLVTP TLQ Sbjct: 130 PKRLGPKRANNIRKFFGLTKEDDVRQFV--VRREVV-KGDKKYTKAPKIQRLVTPQTLQR 186 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 214 + AAEY +LLAQRL E++ R+E +R S L A Sbjct: 187 KRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAERAEIKKRRASSLKA 236
>RS6B_SCHPO (Q9C0Z7) 40S ribosomal protein S6-B| Length = 239 Score = 84.3 bits (207), Expect = 2e-16 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKK-VSKAPKIQRLVTPLTLQ 367 P+ GPKRASKI++ FNL K+DDVR +V R K+GKK +KAPKIQRLVTP TLQ Sbjct: 130 PKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQ 188 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 220 + EAAE+ +L+A+R+ E + ++ A+R S + Sbjct: 189 HKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVKARRASSM 237
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 81.6 bits (200), Expect = 1e-15 Identities = 48/110 (43%), Positives = 62/110 (56%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 P+ GPKRA+ I+K F L K+DDVR YV R + K K +KAPKIQRLVTP LQ Sbjct: 130 PKRLGPKRANNIRKFFGLTKEDDVRDYVI---RREVTKGDKSYTKAPKIQRLVTPQRLQR 186 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 214 + AAEY +LLA+RL E++ ++E +R S L A Sbjct: 187 KRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEKAEVRKRRASSLKA 236
>RS6_AEDAE (Q9U761) 40S ribosomal protein S6| Length = 346 Score = 80.9 bits (198), Expect = 2e-15 Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 1/111 (0%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQ 367 PR GPKRAS I+KL+NL K+DDVR +V +R K GKK +KAPKIQRL+TP+ LQ Sbjct: 130 PRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQ 187 Query: 366 XXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 214 K AEY K+L R +++R RR ++ R S+ Sbjct: 188 RKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMRDSRSS 238
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 80.9 bits (198), Expect = 2e-15 Identities = 49/110 (44%), Positives = 63/110 (57%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 P+ GPKRA+ I+K F L KDDDVR +V RR + K K +KAPKIQRLVTP LQ Sbjct: 130 PKRLGPKRANNIRKFFGLTKDDDVRDFV--IRREVV-KGDKTYTKAPKIQRLVTPQRLQR 186 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 214 + AAEY +LLA+RL E++ ++E +R S L A Sbjct: 187 KRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASSLKA 236
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 80.1 bits (196), Expect = 4e-15 Identities = 47/110 (42%), Positives = 62/110 (56%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 P+ GPKRA+ I+K F L K+DDVR +V R + K K +KAPKIQRLVTP LQ Sbjct: 130 PKRLGPKRANNIRKFFGLSKEDDVRDFVI---RREVTKGEKTYTKAPKIQRLVTPQRLQR 186 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 214 + AAEY +LLA+RL E++ ++E +R S L A Sbjct: 187 KRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLKA 236
>RS6_CAEEL (Q9NEN6) 40S ribosomal protein S6| Length = 246 Score = 79.7 bits (195), Expect = 5e-15 Identities = 49/109 (44%), Positives = 63/109 (57%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 PR GPKRASKI+KLFNL K DDV YV T+ +TF + K + APKIQRL+TP + Sbjct: 130 PRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITPARIAR 187 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 217 + +AA Y KLLA+ KE+ D + +A+RRS S Sbjct: 188 KKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAK---IARRRSSAS 233
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 79.3 bits (194), Expect = 6e-15 Identities = 47/110 (42%), Positives = 63/110 (57%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 P+ GPKRA+ I+K F L K+DDVR +V R + K K +KAPKIQRLVTP LQ Sbjct: 130 PKRLGPKRANHIRKFFGLTKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQR 186 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 214 + AAEY +LLA+RL E++ ++E+ +R S L A Sbjct: 187 KRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEKAETRKRRASSLKA 236
>RS6_AEDAL (Q9U762) 40S ribosomal protein S6| Length = 349 Score = 79.0 bits (193), Expect = 8e-15 Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 1/110 (0%) Frame = -1 Query: 540 RMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQX 364 R GPKRAS I+KL+NL K+DDVR YV +R K GKK +KAPKIQRL+TP+ LQ Sbjct: 131 RRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVLQR 188 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 214 K AEY K+L R +++R RR ++ R S+ Sbjct: 189 KRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMRDSRSS 238
>RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10)| Length = 235 Score = 78.2 bits (191), Expect = 1e-14 Identities = 50/111 (45%), Positives = 62/111 (55%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 P+ GPKRA+ I+K F L K+DDVR YV R + K K +KAPKIQRLVTP LQ Sbjct: 130 PKRLGPKRANNIRKFFGLTKEDDVRDYVI---RREVTKGEKTYTKAPKIQRLVTPQRLQR 186 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAA 211 + AAEY +LLA+RL E R++E +R S L AA Sbjct: 187 KRQQKALKIKNAQAQREAAAEYAQLLAKRLAE---RKAEVRKRRASSLKAA 234
>RS6_LEIIN (O44012) 40S ribosomal protein S6| Length = 249 Score = 70.5 bits (171), Expect = 3e-12 Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 PR GPKRASKI+KLFNL + +DVR YV RR + K KAPKIQRL+TP Sbjct: 133 PRRLGPKRASKIRKLFNLSRTEDVRKYV--VRRRVVKSGKKDRLKAPKIQRLITPRVKAR 190 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLA--QRLKEQRD---RRSESMAKRRSKLSAATK 205 +E EY +L+A +R QRD + ++ + +R++++A K Sbjct: 191 RAKKAKDAIAKVRASAAERREYLRLIASNRRALRQRDHSKKHTQKVHAQRAEVAAFQK 248
>RS6_LEIMA (Q9NE83) 40S ribosomal protein S6| Length = 249 Score = 70.1 bits (170), Expect = 4e-12 Identities = 46/118 (38%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Frame = -1 Query: 543 PRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQX 364 PR GPKRASKI+KLFNL + +DVR YV RR + K KAPKIQRL+TP Sbjct: 133 PRRLGPKRASKIRKLFNLSRTEDVRKYV--VRRRVVKSGKKDRLKAPKIQRLITPRVKAR 190 Query: 363 XXXXXXXXXXXXXXXKSEAAEYQKLLA--QRLKEQRDRRSESMAK---RRSKLSAATK 205 +E EY +L+A +R QRD + K +R++++A K Sbjct: 191 RAKKAKDAIAKVRASAAERREYLRLIASNRRALRQRDHSKKHTRKVHAQRAEVAAFQK 248
>PEPF_MYCPN (P54125) Oligoendopeptidase F homolog (EC 3.4.24.-)| Length = 611 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/74 (27%), Positives = 30/74 (40%) Frame = +3 Query: 18 FVHSVTKSRRXGTMFTQNSINYNSTTLKVAARFISSNKVLETLSPL*LITKDCKHLKQRQ 197 +V+ + GT+ + +S L RF+SS L L + L+ D Q Sbjct: 527 YVYKYAIGQVVGTLVGKKLSAGDSNMLAAYKRFLSSGSTLPPLETIKLLGIDLT-----Q 581 Query: 198 PEPWWQQTASTSSW 239 PEPW + A W Sbjct: 582 PEPWQEAHAELKRW 595
>M22_STRPY (P50469) M protein, serotype 2.2 precursor| Length = 372 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Frame = -1 Query: 312 EAAEYQ-KLLAQ--RLKEQRDRRSESMAKRRSKLSAATKAPA 196 E AE Q KL AQ LKEQ +++E +AK R++ +A +K PA Sbjct: 269 EKAELQAKLDAQGKALKEQLAKQTEELAKLRAEKAAGSKTPA 310
>DCTN4_RAT (Q9QUR2) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 29.6 bits (65), Expect = 5.8 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -1 Query: 303 EYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSL 169 EY + LAQ+ K +RDR+ +A+RR+ + A + D YSL Sbjct: 149 EYYQQLAQKEKVERDRKK--LARRRNYMPLAFSQHTIHVVDKYSL 191
>DCTN4_MOUSE (Q8CBY8) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 29.6 bits (65), Expect = 5.8 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -1 Query: 303 EYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSL 169 EY + LAQ+ K +RDR+ +A+RR+ + A + D YSL Sbjct: 149 EYYQQLAQKEKVERDRKK--LARRRNYMPLAFSQHTIHVVDKYSL 191
>MX_STRP9 (P16946) Virulence factor-related M protein precursor| Length = 369 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Frame = -1 Query: 312 EAAEYQ-KLLAQ--RLKEQRDRRSESMAKRRSKLSAATKAPA 196 E AE Q KL AQ LKEQ +++E +AK R++ +A +K PA Sbjct: 266 EKAELQAKLDAQGKALKEQLAKQTEELAKLRAEKAAGSKTPA 307
>ERCC5_HUMAN (P28715) DNA-repair protein complementing XP-G cells (Xeroderma| pigmentosum group G-complementing protein) (DNA excision repair protein ERCC-5) Length = 1186 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/59 (33%), Positives = 32/59 (54%) Frame = -1 Query: 306 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSLSLLIIMAKEFQAL 130 A+ +K A+R+K QR R+ + R+ K +AA++ AVS + M KEF+ L Sbjct: 1000 AQQEKEDAKRIKSQRLNRAVTCMLRKEKEAAASEIEAVS----------VAMEKEFELL 1048
>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like Length = 6781 Score = 29.3 bits (64), Expect = 7.6 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -1 Query: 468 SYVNTYRRTFLNKKGKKVSKAPKIQRLV 385 +Y +TY TFL+ KV++ PKI++ V Sbjct: 179 TYCSTYEHTFLDGTAMKVARTPKIKKNV 206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,530,484 Number of Sequences: 219361 Number of extensions: 785969 Number of successful extensions: 2499 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2467 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
