ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAS17_YEAST (Q12446) Proline-rich protein LAS17 31 0.93
2CYTSA_TETNG (Q2KN95) Cytospin-A 28 4.6
3YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromo... 28 6.0
4CYTSA_FUGRU (Q2KN94) Cytospin-A 28 7.9

>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +3

Query: 165 HTPRRDGXFENY---YXVRGRDTIHVRAHQXPPPPPHDRSTIN 284
           H PR +   +N    Y     DTI    H+ PPPPP    T +
Sbjct: 154 HGPRGESLIDNQRKRYNYEDVDTIPTTKHKAPPPPPPTAETFD 196



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>CYTSA_TETNG (Q2KN95) Cytospin-A|
          Length = 1113

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 142 FKSASFSQYSTCCTTFPTXCIVPVPRTPFNPA 47
           F SAS    S+  +  PT    P+PRTP +P+
Sbjct: 832 FDSASQGPPSSGASVTPTASAAPLPRTPLSPS 863



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>YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromosome III|
          Length = 610

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 26  NNLHTYARWIKWRAWYWYNAXG 91
           NN   Y RW++W +W  Y   G
Sbjct: 526 NNFPVYIRWMQWTSWCRYGFEG 547



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>CYTSA_FUGRU (Q2KN94) Cytospin-A|
          Length = 1118

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 142 FKSASFSQYSTCCTTFPTXCIVPVPRTPFNPA 47
           F SAS    S   +  PT    P+PRTP +P+
Sbjct: 837 FDSASQGPPSNGASVTPTVSAAPLPRTPLSPS 868


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,260,803
Number of Sequences: 219361
Number of extensions: 669542
Number of successful extensions: 1975
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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