ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 434 e-119
2gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, com... 66 7e-08
3gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Canc... 44 0.24
4gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 0.95
5gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.95
6emb|CR702474.2|CNS0G4ZA Tetraodon nigroviridis full-length cDNA 42 0.95
7emb|CR702005.2|CNS0G4M9 Tetraodon nigroviridis full-length cDNA 42 0.95
8emb|CR701878.2|CNS0G4IQ Tetraodon nigroviridis full-length cDNA 42 0.95
9emb|CR700458.2|CNS0G3FA Tetraodon nigroviridis full-length cDNA 42 0.95
10emb|CR698963.2|CNS0G29R Tetraodon nigroviridis full-length cDNA 42 0.95
11emb|CR697642.2|CNS0G192 Tetraodon nigroviridis full-length cDNA 42 0.95
12emb|CR696608.2|CNS0G0GC Tetraodon nigroviridis full-length cDNA 42 0.95
13emb|CR694961.2|CNS0FZ6L Tetraodon nigroviridis full-length cDNA 42 0.95
14emb|CR693847.2|CNS0FYBN Tetraodon nigroviridis full-length cDNA 42 0.95
15emb|CR693583.2|CNS0FY4B Tetraodon nigroviridis full-length cDNA 42 0.95
16emb|CR693474.2|CNS0FY1A Tetraodon nigroviridis full-length cDNA 42 0.95
17emb|CR690780.2|CNS0FVYG Tetraodon nigroviridis full-length cDNA 42 0.95
18emb|CR689984.2|CNS0FVCC Tetraodon nigroviridis full-length cDNA 42 0.95
19emb|CR686426.2|CNS0FSLI Tetraodon nigroviridis full-length cDNA 42 0.95
20emb|CR685561.2|CNS0FRXH Tetraodon nigroviridis full-length cDNA 42 0.95
21emb|CR685520.2|CNS0FRWC Tetraodon nigroviridis full-length cDNA 42 0.95
22emb|CR684429.2|CNS0FR21 Tetraodon nigroviridis full-length cDNA 42 0.95
23emb|BX537273.16| Zebrafish DNA sequence from clone CH211-151F2 i... 42 0.95
24gb|AC116631.6| Homo sapiens BAC clone RP11-429B11 from 4, comple... 42 0.95
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.95
26emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in... 42 0.95
27emb|BX005014.5| Zebrafish DNA sequence from clone CH211-103E2 in... 42 0.95
28gb|AC109201.12| Mus musculus chromosome 15, clone RP23-18P10, co... 40 3.7
29gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosom... 40 3.7
30gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124... 40 3.7
31gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome ... 40 3.7
32gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosom... 40 3.7
33emb|BX511098.5| Zebrafish DNA sequence from clone CH211-202L3 in... 40 3.7
34gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell... 40 3.7
35emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 i... 40 3.7
36gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, r... 40 3.7
37gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom... 40 3.7
38emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, ... 40 3.7
39emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 3.7
40gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55... 40 3.7
41gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 ... 40 3.7
42emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on ch... 40 3.7
43emb|BX005187.9| Mouse DNA sequence from clone RP23-187O10 on chr... 40 3.7
44gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, compl... 40 3.7

>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
          Length = 1285

 Score =  434 bits (219), Expect = e-119
 Identities = 242/248 (97%), Gaps = 2/248 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    aattcgatcgtcgtcccttctt-aataataatttacatacatatgcacgctggattaaat 59
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1285 aattcgatcgtcgtcccttctttaataataatttacatacatatgcacgctggattaaat 1226

                                                                        
Query: 60   ggcgtgcgtggtactggtacaatgcanaaggtagggaaagtagtacagcaggtactatac 119
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1225 ggcgtgcgtggtactggtacaatgcaaaaggtagggaaagtagtacagcaggtactatac 1166

                                                                        
Query: 120  tgactgaaactcgcagacttgaacaggcgacgcttccggcaggcacacacaccgaggaga 179
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1165 tgactgaaactcgcagacttgaacaggcgacgctgccggcaggcacacacaccgaggaga 1106

                                                                        
Query: 180  gacggcngatttgagaactattacngcgtgcgcggccgagacacgatccacg-tacgcgc 238
            |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1105 gacggcagatttgagaactattacagcgtgcgcggccgagacacgatccacgttacgcgc 1046

                    
Query: 239  gcaccagc 246
            ||||||||
Sbjct: 1045 gcaccagc 1038



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>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds
          Length = 1248

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 4    tcgatcgtcgtcccttcttaat-aataatttacatacatatgcacgctggattaaatggc 62
            ||||||| ||| |||||||||| |||||||||||||||||||||||||   |||||| ||
Sbjct: 1241 tcgatcgacgttccttcttaattaataatttacatacatatgcacgctccgttaaatcgc 1182

                 
Query: 63   gtgcg 67
            |||||
Sbjct: 1181 gtgcg 1177



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 156  cggcaggcacacacaccgaggagag 180
            |||||||||||||||||||||||||
Sbjct: 1103 cggcaggcacacacaccgaggagag 1079



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  aactcgcagacttgaacagg 146
            ||||||||||||||||||||
Sbjct: 1142 aactcgcagacttgaacagg 1123



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>gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 174309

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 22    taataataatttacatacatat 43
             ||||||||||||||||||||||
Sbjct: 29491 taataataatttacatacatat 29512



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>gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OABb-289A1, complete
             sequence
          Length = 109794

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    ataatttacatacatatgcac 47
             |||||||||||||||||||||
Sbjct: 95031 ataatttacatacatatgcac 95011



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>gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_F05,
             complete sequence
          Length = 119573

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 22    taataataatttacatacatatgca 46
             ||||||||| |||||||||||||||
Sbjct: 27479 taataataacttacatacatatgca 27503



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>emb|CR702474.2|CNS0G4ZA Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44



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>emb|CR702005.2|CNS0G4M9 Tetraodon nigroviridis full-length cDNA
          Length = 970

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44



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>emb|CR701878.2|CNS0G4IQ Tetraodon nigroviridis full-length cDNA
          Length = 934

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 30  gggaaagtagtacagcaggta 10



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>emb|CR700458.2|CNS0G3FA Tetraodon nigroviridis full-length cDNA
          Length = 965

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44



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>emb|CR698963.2|CNS0G29R Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44



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>emb|CR697642.2|CNS0G192 Tetraodon nigroviridis full-length cDNA
          Length = 961

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 56  gggaaagtagtacagcaggta 36



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>emb|CR696608.2|CNS0G0GC Tetraodon nigroviridis full-length cDNA
          Length = 967

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 62  gggaaagtagtacagcaggta 42



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>emb|CR694961.2|CNS0FZ6L Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44



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>emb|CR693847.2|CNS0FYBN Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 63  gggaaagtagtacagcaggta 43



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>emb|CR693583.2|CNS0FY4B Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 63  gggaaagtagtacagcaggta 43



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>emb|CR693474.2|CNS0FY1A Tetraodon nigroviridis full-length cDNA
          Length = 934

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 50  gggaaagtagtacagcaggta 30



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>emb|CR690780.2|CNS0FVYG Tetraodon nigroviridis full-length cDNA
          Length = 967

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 62  gggaaagtagtacagcaggta 42



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>emb|CR689984.2|CNS0FVCC Tetraodon nigroviridis full-length cDNA
          Length = 935

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 30  gggaaagtagtacagcaggta 10



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>emb|CR686426.2|CNS0FSLI Tetraodon nigroviridis full-length cDNA
          Length = 960

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 55  gggaaagtagtacagcaggta 35



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>emb|CR685561.2|CNS0FRXH Tetraodon nigroviridis full-length cDNA
          Length = 961

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 55  gggaaagtagtacagcaggta 35



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>emb|CR685520.2|CNS0FRWC Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44



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>emb|CR684429.2|CNS0FR21 Tetraodon nigroviridis full-length cDNA
          Length = 975

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  gggaaagtagtacagcaggta 113
           |||||||||||||||||||||
Sbjct: 68  gggaaagtagtacagcaggta 48



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>emb|BX537273.16| Zebrafish DNA sequence from clone CH211-151F2 in linkage group 10,
             complete sequence
          Length = 167226

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    taataataatttacatacata 42
             |||||||||||||||||||||
Sbjct: 60087 taataataatttacatacata 60107



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>gb|AC116631.6| Homo sapiens BAC clone RP11-429B11 from 4, complete sequence
          Length = 125133

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    ataatttacatacatatgcac 47
             |||||||||||||||||||||
Sbjct: 18615 ataatttacatacatatgcac 18635



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 22       taataataatttacatacatatgca 46
                ||||||||| |||||||||||||||
Sbjct: 15861488 taataataacttacatacatatgca 15861464



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>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22,
             complete sequence
          Length = 164475

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    aataataatttacatacatat 43
             |||||||||||||||||||||
Sbjct: 30255 aataataatttacatacatat 30275



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>emb|BX005014.5| Zebrafish DNA sequence from clone CH211-103E2 in linkage group 10,
             complete sequence
          Length = 160621

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    taataataatttacatacata 42
             |||||||||||||||||||||
Sbjct: 47614 taataataatttacatacata 47634



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>gb|AC109201.12| Mus musculus chromosome 15, clone RP23-18P10, complete sequence
          Length = 213493

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    gcttccggcaggcacacaca 170
              ||||||||||||||||||||
Sbjct: 124437 gcttccggcaggcacacaca 124456



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>gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosome 16, complete
             sequence
          Length = 199601

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    tgcgtggtactggtacaatg 83
             ||||||||||||||||||||
Sbjct: 64904 tgcgtggtactggtacaatg 64885



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>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4,
            complete sequence
          Length = 183648

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   taataataatttacatacat 41
            ||||||||||||||||||||
Sbjct: 3763 taataataatttacatacat 3744



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>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence
          Length = 233904

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     ttaataataatttacatacatatg 44
              ||||||||||| ||||||||||||
Sbjct: 205619 ttaataataatatacatacatatg 205596



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>gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosome 9, complete sequence
          Length = 209835

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     tgcgtggtactggtacaatg 83
              ||||||||||||||||||||
Sbjct: 199385 tgcgtggtactggtacaatg 199366



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>emb|BX511098.5| Zebrafish DNA sequence from clone CH211-202L3 in linkage group 5,
             complete sequence
          Length = 72481

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    ttcttaataataatttacat 37
             ||||||||||||||||||||
Sbjct: 25089 ttcttaataataatttacat 25108



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>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 166000

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     taataataatttacatacat 41
              ||||||||||||||||||||
Sbjct: 100924 taataataatttacatacat 100943



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>emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 in linkage group 3,
             complete sequence
          Length = 190220

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    taataataatttacatacat 41
             ||||||||||||||||||||
Sbjct: 69241 taataataatttacatacat 69260



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>gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, region 90A-90A, BAC clone
              BACR48C05, complete sequence
          Length = 164450

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     tacatacatatgcacgctgg 52
              ||||||||||||||||||||
Sbjct: 141958 tacatacatatgcacgctgg 141939



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>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
             sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    ttaataataatttacatacatatg 44
             ||||||||||| ||||||||||||
Sbjct: 83579 ttaataataatatacatacatatg 83602



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>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence
          Length = 169897

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttcttaataataatttacat 37
             ||||||||||||||||||||
Sbjct: 69809 ttcttaataataatttacat 69790



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>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    taataataatttacatacat 41
             ||||||||||||||||||||
Sbjct: 76094 taataataatttacatacat 76075



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>gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55 of 118 of the complete
              sequence
          Length = 217725

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     tacatacatatgcacgctgg 52
              ||||||||||||||||||||
Sbjct: 123669 tacatacatatgcacgctgg 123650



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>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete
             sequence
          Length = 332030

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    taataataatttacatacat 41
             ||||||||||||||||||||
Sbjct: 23638 taataataatttacatacat 23619



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>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete
              sequence
          Length = 203615

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     tgcgtggtactggtacaatg 83
              ||||||||||||||||||||
Sbjct: 196039 tgcgtggtactggtacaatg 196058



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>emb|BX005187.9| Mouse DNA sequence from clone RP23-187O10 on chromosome X, complete
             sequence
          Length = 98612

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    tgcgtggtactggtacaatg 83
             ||||||||||||||||||||
Sbjct: 32191 tgcgtggtactggtacaatg 32172



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>gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, complete sequence
          Length = 174162

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    tgcgtggtactggtacaatg 83
             ||||||||||||||||||||
Sbjct: 50679 tgcgtggtactggtacaatg 50660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,956,123
Number of Sequences: 3902068
Number of extensions: 1956123
Number of successful extensions: 46571
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46503
Number of HSP's gapped (non-prelim): 66
length of query: 286
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 264
effective length of database: 17,147,199,772
effective search space: 4526860739808
effective search space used: 4526860739808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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