>RUVB_EHRRW (Q5HAK4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 331

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 66  SKPCRKEKNNIKTNRMILQQISGASSCSFMLNVLTPLTMTREAPIEHFLCVLFPG 230
           S  C +++ NI     +L +  G SS    L +       R+ PI+H L    PG
Sbjct: 9   SSECIEDQQNISMRPNLLDEFIGQSSVVSNLKIFIDAAYERKEPIDHILLYGPPG 63

>RUVB_EHRRG (Q5FG39) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 331

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 66  SKPCRKEKNNIKTNRMILQQISGASSCSFMLNVLTPLTMTREAPIEHFLCVLFPG 230
           S  C +++ NI     +L +  G SS    L +       R+ PI+H L    PG
Sbjct: 9   SSECIEDQQNISMRPNLLDEFIGQSSVVSNLKIFIDAAYERKEPIDHILLYGPPG 63

>RAD17_MOUSE (Q6NXW6) Cell cycle checkpoint protein RAD17|
          Length = 688

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
 Frame = +3

Query: 15  SSYNNLKREILLHCWKASKPCRKEKNNIKTNRMILQQISGASSCSFMLNVLTPLTMTREA 194
           SS++  KR  L      SK  +K+K+N       +Q I G     F+   L  +   + A
Sbjct: 349 SSWSKKKRMSLKSDAAISKSKQKKKHNSTLENQEIQAIGGKDVSLFLFRALGKILYCKRA 408

Query: 195 PIEHFLCVLFPG------------*PTVDLPQKYYSGQWIKLFSQQLYLEHFTE 320
           P+        P              P   +   +  G +  L+  Q Y++ F E
Sbjct: 409 PLTELDSPRLPAHLSEHDRDTLLVQPEEIVEMSHMPGDFFNLYLHQNYIDFFAE 462

>ZN294_MOUSE (Q6A009) Zinc finger protein 294 (Zfp-294)|
          Length = 1767

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +3

Query: 153  MLNVLTPLTMTREAPIE----HFLCVLFPG*PTVD 245
            +LN LTPL + R  P++    H LC L P  P  D
Sbjct: 1383 LLNTLTPLLLFRARPVQIAAYHMLCKLMPELPQHD 1417

>SPTCA_DROME (P13395) Spectrin alpha chain|
          Length = 2415

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 47  VTLLESIKTLQERKEQHQNQ*NDFTTDQR 133
           V +LE+++ +QER+EQ  ++ NDF  + R
Sbjct: 9   VKILETVEDIQERREQVLSRYNDFKIETR 37

>ALP_HUMAN (Q9H0A0) N-acetyltransferase-like protein (EC 2.3.1.-)|
          Length = 1025

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 99  KTNRMILQQISGASSCSFMLNVLTPLTMTREAPIEHFLCVLFPG*PT 239
           K + + LQ++      S   N    L M  +AP  H  C+L P  PT
Sbjct: 520 KASEVFLQRLMALYVASHYKNSPNDLQMLSDAPAHHLFCLLPPVPPT 566

>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)|
          Length = 1201

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 246 LPQKYYSGQWIKLFSQQLYLEHFTEXSFQRI 338
           L Q Y S   IK   QQLY+E  T+ SF+ +
Sbjct: 459 LQQVYASVNKIKNLGQQLYIESMTKSSFKPV 489

>IPOU_DROME (P24350) Inhibitory POU protein (I-POU) (Abnormal chemosensory jump|
           6 protein)
          Length = 396

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 256 FCGRSTVGHPGNKTHRKCSMGASLVIVNGVSTFNMKLHEDAPLIC 122
           F GR +  +  ++  R+C    S+ I +   +   +L EDA L+C
Sbjct: 20  FPGRYSPSYRSSEQMRRCMPNPSIHISSSCDSLESRLLEDASLLC 64

>VID21_DEBHA (Q6BI82) Chromatin modification-related protein VID21|
          Length = 1193

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 32   EKRNSVTLLESIKTLQERKEQHQNQ 106
            ++RN + +L++ KT Q+++ QHQ Q
Sbjct: 1069 QERNQLQMLKAAKTAQQQQLQHQQQ 1093


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,941,451
Number of Sequences: 219361
Number of extensions: 1034891
Number of successful extensions: 2367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)