ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
2gb|BT017292.1| Zea mays clone EL01N0315B08.c mRNA sequence 56 9e-05
3gb|AY107014.1| Zea mays PCO129760 mRNA sequence 56 9e-05
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
5dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
6dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
7gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosom... 42 1.3
8gb|AC132944.3| Mus musculus BAC clone RP24-284N8 from chromosome... 42 1.3
9gb|AC159893.2| Mus musculus BAC clone RP23-365N23 from chromosom... 42 1.3
10gb|U23521.1| Caenorhabditis elegans cosmid F41C3, complete sequence 42 1.3
11dbj|AK029824.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.3
12gb|AC020637.9|AC020637 Homo sapiens 12 BAC RP11-530H22 (Roswell ... 42 1.3
13ref|NM_173435.1| Mus musculus RIKEN cDNA 4930595M18 gene (493059... 42 1.3
14emb|BX470101.6| Mouse DNA sequence from clone RP23-217L21 on chr... 42 1.3
15gb|AC174644.2| Mus musculus BAC clone RP23-432C18 from chromosom... 42 1.3
16gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosom... 42 1.3
17emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chr... 42 1.3
18ref|NM_133259.2| Homo sapiens leucine-rich PPR-motif containing ... 40 5.2
19ref|XM_531800.2| PREDICTED: Canis familiaris similar to leucine-... 40 5.2
20gb|BC026034.1| Homo sapiens leucine-rich PPR-motif containing, m... 40 5.2
21gb|AC073517.6| Homo sapiens BAC clone RP11-163E9 from 7, complet... 40 5.2
22gb|AC140549.12| Medicago truncatula clone mth2-28o14, complete s... 40 5.2
23emb|AL591045.5| Human DNA sequence from clone RP11-155H6 on chro... 40 5.2
24emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chr... 40 5.2
25emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chr... 40 5.2
26emb|BX842656.1| Bdellovibrio bacteriovorus complete genome, stra... 40 5.2
27gb|BC050311.1| Homo sapiens leucine-rich PPR-motif containing, m... 40 5.2
28gb|AY289212.1| Homo sapiens leucine-rich PPR motif-containing pr... 40 5.2
29gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, comp... 40 5.2
30dbj|AK125781.1| Homo sapiens cDNA FLJ43793 fis, clone TESTI40000... 40 5.2
31gb|M92439.1|HUM130LEU Homo sapiens leucine-rich PPR-motif contai... 40 5.2
32gb|AC008871.5| Homo sapiens chromosome 5 clone CTD-2197I11, comp... 40 5.2
33gb|AC093668.4| Homo sapiens BAC clone RP11-514P8 from 7, complet... 40 5.2
34gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nippon... 40 5.2
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
36dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
37gb|AC087884.18| Homo sapiens 12 BAC RP11-416A17 (Roswell Park Ca... 40 5.2
38gb|AC008179.2| Homo sapiens BAC clone RP11-576F1 from 2, complet... 40 5.2
39gb|AC019064.6| Homo sapiens BAC clone RP11-153O16 from 2, comple... 40 5.2
40gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence 40 5.2
41gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, com... 40 5.2
42emb|AL512360.2|CNS07EF9 Human chromosome 14 DNA sequence BAC R-7... 40 5.2
43gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
44gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
45emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327... 40 5.2 
>dbj|AK066699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073F20, full
            insert sequence
          Length = 2221

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                        
Query: 296  attataccttgaacatttcaccgaanagtccttccagaggattctgttgccgtacaccat 355
            |||||||| ||||||| ||||| || |||||||||| ||   ||||   |||||  ||||
Sbjct: 1887 attataccctgaacatatcaccaaaaagtccttccaaagcgctctggctccgtattccat 1828

                                           
Query: 356  aaaattttgcagctatttcatccaataactc 386
            |||||||||| ||||||||||| ||||||||
Sbjct: 1827 aaaattttgcggctatttcatctaataactc 1797
to top
>gb|BT017292.1| Zea mays clone EL01N0315B08.c mRNA sequence
          Length = 1511

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 355  taaaattttgcagctatttcatccaataactc 386
            ||||||||||||||||||||||||| ||||||
Sbjct: 1046 taaaattttgcagctatttcatccagtaactc 1015
to top
>gb|AY107014.1| Zea mays PCO129760 mRNA sequence
          Length = 826

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 355 taaaattttgcagctatttcatccaataactc 386
           ||||||||||||||||||||||||| ||||||
Sbjct: 503 taaaattttgcagctatttcatccagtaactc 472
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                           
Query: 300     taccttgaacatttcaccgaanagtccttccagaggattctgttgccgtacaccataaaa 359
               |||| ||||||| ||||| || |||||||||| ||   ||||   |||||  ||||||||
Sbjct: 3341347 taccctgaacatatcaccaaaaagtccttccaaagcgctctggctccgtattccataaaa 3341288

                                         
Query: 360     ttttgcagctatttcatccaataact 385
               |||||| ||||||||||| |||||||
Sbjct: 3341287 ttttgcggctatttcatctaataact 3341262
to top
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0701D05
          Length = 172161

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                         
Query: 300   taccttgaacatttcaccgaanagtccttccagaggattctgttgccgtacaccataaaa 359
             |||| ||||||| ||||| || |||||||||| ||   ||||   |||||  ||||||||
Sbjct: 19717 taccctgaacatatcaccaaaaagtccttccaaagcgctctggctccgtattccataaaa 19658

                                       
Query: 360   ttttgcagctatttcatccaataact 385
             |||||| ||||||||||| |||||||
Sbjct: 19657 ttttgcggctatttcatctaataact 19632
to top
>dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1189A09
          Length = 167761

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                          
Query: 300    taccttgaacatttcaccgaanagtccttccagaggattctgttgccgtacaccataaaa 359
              |||| ||||||| ||||| || |||||||||| ||   ||||   |||||  ||||||||
Sbjct: 158976 taccctgaacatatcaccaaaaagtccttccaaagcgctctggctccgtattccataaaa 158917

                                        
Query: 360    ttttgcagctatttcatccaataact 385
              |||||| ||||||||||| |||||||
Sbjct: 158916 ttttgcggctatttcatctaataact 158891
to top
>gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosome 17, complete sequence
          Length = 184079

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 80     gaaagaaaagaacaacatcaaaacc 104
              |||||||||||| ||||||||||||
Sbjct: 130689 gaaagaaaagaagaacatcaaaacc 130713
to top
>gb|AC132944.3| Mus musculus BAC clone RP24-284N8 from chromosome 3, complete sequence
          Length = 145784

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 14    atcatcttacaacaatctgaaaaga 38
             |||||||||||||||||| ||||||
Sbjct: 22270 atcatcttacaacaatctcaaaaga 22294
to top
>gb|AC159893.2| Mus musculus BAC clone RP23-365N23 from chromosome 9, complete sequence
          Length = 196765

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 206   cttcctgtgcgttttgtttcctgggtgac 234
             |||||||||| ||||||||||||| ||||
Sbjct: 45562 cttcctgtgccttttgtttcctggttgac 45590
to top
>gb|U23521.1| Caenorhabditis elegans cosmid F41C3, complete sequence
          Length = 38897

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 356   aaaattttgcagctatttcat 376
             |||||||||||||||||||||
Sbjct: 13949 aaaattttgcagctatttcat 13929
to top
>dbj|AK029824.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930595M18 product:hypothetical
            RNA-binding region RNP-1  (RNA recognition motif)/RING
            finger containing protein, full insert sequence
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   tacaacaatctgaaaagagaa 41
            |||||||||||||||||||||
Sbjct: 1182 tacaacaatctgaaaagagaa 1202
to top
>gb|AC020637.9|AC020637 Homo sapiens 12 BAC RP11-530H22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177317

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     tacaacaatctgaaaagagaa 41
              |||||||||||||||||||||
Sbjct: 121859 tacaacaatctgaaaagagaa 121879
to top
>ref|NM_173435.1| Mus musculus RIKEN cDNA 4930595M18 gene (4930595M18Rik), mRNA
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   tacaacaatctgaaaagagaa 41
            |||||||||||||||||||||
Sbjct: 1182 tacaacaatctgaaaagagaa 1202
to top
>emb|BX470101.6| Mouse DNA sequence from clone RP23-217L21 on chromosome X, complete
              sequence
          Length = 161169

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 21     tacaacaatctgaaaagagaa 41
              |||||||||||||||||||||
Sbjct: 160224 tacaacaatctgaaaagagaa 160204
to top
>gb|AC174644.2| Mus musculus BAC clone RP23-432C18 from chromosome 9, complete sequence
          Length = 199707

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 206   cttcctgtgcgttttgtttcctgggtgac 234
             |||||||||| ||||||||||||| ||||
Sbjct: 97405 cttcctgtgccttttgtttcctggttgac 97433
to top
>gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosome 17, complete
             sequence
          Length = 180189

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 80    gaaagaaaagaacaacatcaaaacc 104
             |||||||||||| ||||||||||||
Sbjct: 63822 gaaagaaaagaagaacatcaaaacc 63846
to top
>emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chromosome X, complete
            sequence
          Length = 140246

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   tacaacaatctgaaaagagaa 41
            |||||||||||||||||||||
Sbjct: 1055 tacaacaatctgaaaagagaa 1035
to top
>ref|NM_133259.2| Homo sapiens leucine-rich PPR-motif containing (LRPPRC), mRNA
          Length = 5095

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  caattataccttgaacattt 313
            ||||||||||||||||||||
Sbjct: 1436 caattataccttgaacattt 1417
to top
>ref|XM_531800.2| PREDICTED: Canis familiaris similar to leucine-rich PPR
            motif-containing protein (LOC474572), mRNA
          Length = 4627

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  caattataccttgaacattt 313
            ||||||||||||||||||||
Sbjct: 1378 caattataccttgaacattt 1359
to top
>gb|BC026034.1| Homo sapiens leucine-rich PPR-motif containing, mRNA (cDNA clone
            IMAGE:4904213), containing frame-shift errors
          Length = 1918

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  caattataccttgaacattt 313
            ||||||||||||||||||||
Sbjct: 1409 caattataccttgaacattt 1390
to top
>gb|AC073517.6| Homo sapiens BAC clone RP11-163E9 from 7, complete sequence
          Length = 67706

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    agaaaagaacaacatcaaaa 102
             ||||||||||||||||||||
Sbjct: 18550 agaaaagaacaacatcaaaa 18531
to top
>gb|AC140549.12| Medicago truncatula clone mth2-28o14, complete sequence
          Length = 139778

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    aaagaaaagaacaacatcaa 100
             ||||||||||||||||||||
Sbjct: 91926 aaagaaaagaacaacatcaa 91945
to top
>emb|AL591045.5| Human DNA sequence from clone RP11-155H6 on chromosome 6 Contains part
             of the MAP3K4 gene for mitogen-activated protein kinase
             kinase kinase 4 (MTK1, MEKK4, MAPKKK4, KIAA0213, homolog
             of yeast SSK2/SSK22 MAP kinase kinase kinase), complete
             sequence
          Length = 27353

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    aatctgaaaagagaaattct 46
             ||||||||||||||||||||
Sbjct: 20798 aatctgaaaagagaaattct 20779
to top
>emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 141628

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    caaaagtattattctggcca 271
              ||||||||||||||||||||
Sbjct: 119314 caaaagtattattctggcca 119333
to top
>emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chromosome 13 Contains a
              novel FLJ31073 containing gene, six novel genes and a CpG
              island, complete sequence
          Length = 176930

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     ggaaagaaaagaacaacatc 98
              ||||||||||||||||||||
Sbjct: 143665 ggaaagaaaagaacaacatc 143646
to top
>emb|BX842656.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 11/11
          Length = 307337

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     aaagaaaagaacaacatcaa 100
              ||||||||||||||||||||
Sbjct: 306092 aaagaaaagaacaacatcaa 306073
to top
>gb|BC050311.1| Homo sapiens leucine-rich PPR-motif containing, mRNA (cDNA clone
            MGC:48347 IMAGE:4827456), complete cds
          Length = 4313

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  caattataccttgaacattt 313
            ||||||||||||||||||||
Sbjct: 1387 caattataccttgaacattt 1368
to top
>gb|AY289212.1| Homo sapiens leucine-rich PPR motif-containing protein mRNA, complete
            cds
          Length = 5095

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  caattataccttgaacattt 313
            ||||||||||||||||||||
Sbjct: 1436 caattataccttgaacattt 1417
to top
>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence
          Length = 167898

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tgcaggaaagaaaagaacaa 94
              ||||||||||||||||||||
Sbjct: 142820 tgcaggaaagaaaagaacaa 142839
to top
>dbj|AK125781.1| Homo sapiens cDNA FLJ43793 fis, clone TESTI4000014, highly  similar
            to 130 kDa leucine-rich protein
          Length = 5069

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  caattataccttgaacattt 313
            ||||||||||||||||||||
Sbjct: 1407 caattataccttgaacattt 1388
to top
>gb|M92439.1|HUM130LEU Homo sapiens leucine-rich PPR-motif containing protein (LRPPRC) mRNA,
            complete cds
          Length = 4782

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  caattataccttgaacattt 313
            ||||||||||||||||||||
Sbjct: 1060 caattataccttgaacattt 1041
to top
>gb|AC008871.5| Homo sapiens chromosome 5 clone CTD-2197I11, complete sequence
          Length = 174138

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     gaaagcatcaaaaccttgca 78
              ||||||||||||||||||||
Sbjct: 120512 gaaagcatcaaaaccttgca 120493
to top
>gb|AC093668.4| Homo sapiens BAC clone RP11-514P8 from 7, complete sequence
          Length = 200771

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    agaaaagaacaacatcaaaa 102
             ||||||||||||||||||||
Sbjct: 27396 agaaaagaacaacatcaaaa 27415
to top
>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0065C16, from Chromosome 10, complete sequence
          Length = 146391

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   tgtagtttcatgttaaatgtacta 167
             ||||||| ||||||||||||||||
Sbjct: 10177 tgtagttacatgttaaatgtacta 10154
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 75       tgcaggaaagaaaagaacaa 94
                ||||||||||||||||||||
Sbjct: 25976065 tgcaggaaagaaaagaacaa 25976084
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 144     tgtagtttcatgttaaatgtacta 167
               ||||||| ||||||||||||||||
Sbjct: 8510613 tgtagttacatgttaaatgtacta 8510636
to top
>gb|AC087884.18| Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 196742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    atgttaaatgtactaactcc 172
              ||||||||||||||||||||
Sbjct: 102248 atgttaaatgtactaactcc 102229
to top
>gb|AC008179.2| Homo sapiens BAC clone RP11-576F1 from 2, complete sequence
          Length = 181745

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    acaccataaaattttgcagc 368
              ||||||||||||||||||||
Sbjct: 114091 acaccataaaattttgcagc 114072
to top
>gb|AC019064.6| Homo sapiens BAC clone RP11-153O16 from 2, complete sequence
          Length = 92049

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  acccactgttgatctcccac 252
            ||||||||||||||||||||
Sbjct: 8275 acccactgttgatctcccac 8256
to top
>gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence
          Length = 177993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    agaaaagaacaacatcaaaa 102
             ||||||||||||||||||||
Sbjct: 38671 agaaaagaacaacatcaaaa 38690
to top
>gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, complete sequence
          Length = 185368

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tgcaggaaagaaaagaacaa 94
             ||||||||||||||||||||
Sbjct: 36432 tgcaggaaagaaaagaacaa 36451
to top
>emb|AL512360.2|CNS07EF9 Human chromosome 14 DNA sequence BAC R-737F10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192972

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     caatctgaaaagagaaattc 45
              ||||||||||||||||||||
Sbjct: 147488 caatctgaaaagagaaattc 147507
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 144     tgtagtttcatgttaaatgtacta 167
               ||||||| ||||||||||||||||
Sbjct: 8515712 tgtagttacatgttaaatgtacta 8515735
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 75       tgcaggaaagaaaagaacaa 94
                ||||||||||||||||||||
Sbjct: 25904241 tgcaggaaagaaaagaacaa 25904260
to top
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 161806

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     tgcaggaaagaaaagaacaa 94
              ||||||||||||||||||||
Sbjct: 135606 tgcaggaaagaaaagaacaa 135587


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,797,840
Number of Sequences: 3902068
Number of extensions: 4797840
Number of successful extensions: 100217
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100036
Number of HSP's gapped (non-prelim): 181
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top