Clone Name | rbart08c12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483413.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 101 bits (51), Expect = 2e-18 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 353 gaggacgagcttggacttggaggcgaggttgccgggggcgaaagcgtgcttgtcggg-gc 411 |||||||||||||| |||||||||||||||| | ||| |||| |||||||||||||| || Sbjct: 579 gaggacgagcttggccttggaggcgaggttggccgggccgaacgcgtgcttgtcgggcgc 520 Query: 412 cccggcggtgacggaggtgccgacctgccatatatggttgacggccttcat 462 ||| |||||||||||| |||||||||||| | ||||| |||| |||||| Sbjct: 519 gccgccggtgacggaggagccgacctgccacacctggttcacggacttcat 469
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 101 bits (51), Expect = 2e-18 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 353 gaggacgagcttggacttggaggcgaggttgccgggggcgaaagcgtgcttgtcggg-gc 411 |||||||||||||| |||||||||||||||| | ||| |||| |||||||||||||| || Sbjct: 26079968 gaggacgagcttggccttggaggcgaggttggccgggccgaacgcgtgcttgtcgggcgc 26079909 Query: 412 cccggcggtgacggaggtgccgacctgccatatatggttgacggccttcat 462 ||| |||||||||||| |||||||||||| | ||||| |||| |||||| Sbjct: 26079908 gccgccggtgacggaggagccgacctgccacacctggttcacggacttcat 26079858
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 101 bits (51), Expect = 2e-18 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 353 gaggacgagcttggacttggaggcgaggttgccgggggcgaaagcgtgcttgtcggg-gc 411 |||||||||||||| |||||||||||||||| | ||| |||| |||||||||||||| || Sbjct: 23899 gaggacgagcttggccttggaggcgaggttggccgggccgaacgcgtgcttgtcgggcgc 23840 Query: 412 cccggcggtgacggaggtgccgacctgccatatatggttgacggccttcat 462 ||| |||||||||||| |||||||||||| | ||||| |||| |||||| Sbjct: 23839 gccgccggtgacggaggagccgacctgccacacctggttcacggacttcat 23789
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 253 gcgccgtggtcgccgccgcgccggcg 278 |||||||||||||||||| ||||||| Sbjct: 32899558 gcgccgtggtcgccgccgtgccggcg 32899533 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 gcgacggcgaaggcgaggtc 332 |||||||||||||||||||| Sbjct: 8170863 gcgacggcgaaggcgaggtc 8170882
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 gcgccgtggtcgccgccgcgccggcg 278 |||||||||||||||||| ||||||| Sbjct: 90617 gcgccgtggtcgccgccgtgccggcg 90642
>gb|AC110792.3| Homo sapiens BAC clone RP11-571I18 from 4, complete sequence Length = 170202 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 129 gctaattatagtactcattcat 150 |||||||||||||||||||||| Sbjct: 145581 gctaattatagtactcattcat 145602
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 253 gcgccgtggtcgccgccgcgccggcg 278 |||||||||||||||||| ||||||| Sbjct: 32990068 gcgccgtggtcgccgccgtgccggcg 32990043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 gcgacggcgaaggcgaggtc 332 |||||||||||||||||||| Sbjct: 8168698 gcgacggcgaaggcgaggtc 8168717
>ref|XM_467243.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1566 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 cggccgcggccgcggccgacg 234 ||||||||||||||||||||| Sbjct: 275 cggccgcggccgcggccgacg 255
>ref|XM_519771.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ20421 (LOC464189), mRNA Length = 866 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 ccgcggccgcggccgacgggg 237 ||||||||||||||||||||| Sbjct: 319 ccgcggccgcggccgacgggg 339
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 cgacacgccggccgcggccgc 226 ||||||||||||||||||||| Sbjct: 2300426 cgacacgccggccgcggccgc 2300446
>ref|NM_191086.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 642 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cgccgacacgccggccgcggccgcg 227 ||||||| ||||||||||||||||| Sbjct: 423 cgccgacgcgccggccgcggccgcg 399
>gb|BT018781.1| Zea mays clone EL01N0526F09.d mRNA sequence Length = 2283 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 acgccggccgcggccgcggcc 230 ||||||||||||||||||||| Sbjct: 340 acgccggccgcggccgcggcc 320
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 cacgccggccgcggccgcggc 229 ||||||||||||||||||||| Sbjct: 1251823 cacgccggccgcggccgcggc 1251843 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 gccgtggtcgccgccgcgccggcg 278 |||||| ||||||||||||||||| Sbjct: 119176 gccgtgctcgccgccgcgccggcg 119153
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 cacgccggccgcggccgcggc 229 ||||||||||||||||||||| Sbjct: 2253540 cacgccggccgcggccgcggc 2253520 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 gccgtggtcgccgccgcgccggcg 278 |||||| ||||||||||||||||| Sbjct: 582107 gccgtgctcgccgccgcgccggcg 582130
>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic sequence Length = 346809 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 249880 catgcccactgccacctccgc 249900
>gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B070201/HLA-Cw07020103 genomic sequence Length = 341361 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 252935 catgcccactgccacctccgc 252955
>gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic sequence Length = 265420 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 253041 catgcccactgccacctccgc 253061
>gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic sequence Length = 338517 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 249248 catgcccactgccacctccgc 249268
>gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B15010101/HLA-Cw030401 genomic sequence Length = 351341 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 264873 catgcccactgccacctccgc 264893
>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic sequence Length = 363675 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 264651 catgcccactgccacctccgc 264671
>gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic sequence Length = 328871 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 250232 catgcccactgccacctccgc 250252
>gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic sequence Length = 338544 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 260938 catgcccactgccacctccgc 260958
>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic sequence Length = 336776 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 243750 catgcccactgccacctccgc 243770
>gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic sequence Length = 342745 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 241548 catgcccactgccacctccgc 241568
>emb|CR938714.3| Human DNA sequence from clone DAMC-338G21 on chromosome 6, complete sequence Length = 10602 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 1311 catgcccactgccacctccgc 1291
>emb|AL773544.5| Human DNA sequence from clone DAQB-185I1 on chromosome 6 Contains the C6orf15 gene for chromosome 6 open reading frame 15, the CDSN gene for corneodesmosin, the PSORS1C1 gene for psoriasis susceptibility 1 candidate 1, the PSORS1C2 gene for psoriasis susceptibility 1 candidate 2, the POLR2LP pseudogene for polymerase (RNA) II (DNA directed) polypeptide L, the C6orf18 gene for chromosome 6 open reading frame 18, the TCF19 gene for transcription factor 19 (SC1), the POU5F1 gene for POU domain, class 5, transcription factor 1, the PSORS1C3 gene for psoriasis susceptibility 1 candidate 3, and 1 CpG island, complete sequence Length = 113388 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 47901 catgcccactgccacctccgc 47881
>emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on chromosome 6 contains the gene for STG protein, the CDSN gene for corneodesmosin, the gene for SEEK1 protein, the gene for SPR1 protein, the gene for HCR, the TCF19 gene for transcription factor 19, the POU5F1 gene for POU domain, class 5, transcription factor 1, a putative novel transcript and four CpG islands, complete sequence Length = 204298 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 65576 catgcccactgccacctccgc 65556
>emb|AL662867.5| Human DNA sequence from clone XXbac-34D1 on chromosome 6 contains the genes for STG protein, SEEK1 protein, SPR1 protein and the CDSN gene for corneodesmosin, complete sequence Length = 70288 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 55489 catgcccactgccacctccgc 55469
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 cacgccggccgcggccgcggc 229 ||||||||||||||||||||| Sbjct: 2121169 cacgccggccgcggccgcggc 2121189 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 gccgtggtcgccgccgcgccggcg 278 |||||| ||||||||||||||||| Sbjct: 390697 gccgtgctcgccgccgcgccggcg 390720
>emb|CR936880.3| Human DNA sequence from clone DAMC-257B19 on chromosome 6, complete sequence Length = 6810 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 6182 catgcccactgccacctccgc 6162
>emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chromosome 6, complete sequence Length = 135396 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 117610 catgcccactgccacctccgc 117590
>emb|CR753819.5| Human DNA sequence from clone DADB-141O4 on chromosome 6, complete sequence Length = 81418 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 47354 catgcccactgccacctccgc 47334
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 cgccgccgcgccggcgtcgct 283 ||||||||||||||||||||| Sbjct: 4609755 cgccgccgcgccggcgtcgct 4609775
>dbj|AB202103.1| Homo sapiens C6orf15, C6orf16, CDSN, C6orf17 genes for chromosome 6 open reading frame 15, chromosome 6 open reading frame 16, corneodesmosin, chromosome 6 open reading frame 17, complete cds Length = 30921 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 16179 catgcccactgccacctccgc 16159
>gb|AE005910.1| Caulobacter crescentus CB15 section 236 of 359 of the complete genome Length = 13852 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 cgccgccgcgccggcgtcgct 283 ||||||||||||||||||||| Sbjct: 9566 cgccgccgcgccggcgtcgct 9586
>ref|XM_397369.2| PREDICTED: Apis mellifera similar to MGC80272 protein (LOC413930), mRNA Length = 1956 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 aattggaacattatattgttc 92 ||||||||||||||||||||| Sbjct: 1620 aattggaacattatattgttc 1640
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 cggccgcggccgcggccgacg 234 ||||||||||||||||||||| Sbjct: 28408937 cggccgcggccgcggccgacg 28408917 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gtggtcgccgccgcgccggc 277 |||||||||||||||||||| Sbjct: 24451311 gtggtcgccgccgcgccggc 24451292
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cgccgacacgccggccgcggccgcg 227 ||||||| ||||||||||||||||| Sbjct: 34794987 cgccgacgcgccggccgcggccgcg 34794963 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 gggcgacggcgaaggcgaggtcgc 334 |||||| ||||||||||||||||| Sbjct: 2500961 gggcgagggcgaaggcgaggtcgc 2500938
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1148D12 Length = 132060 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cgccgacacgccggccgcggccgcg 227 ||||||| ||||||||||||||||| Sbjct: 110227 cgccgacgcgccggccgcggccgcg 110203
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 816010 catgcccactgccacctccgc 816030
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454H12 Length = 161004 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cgccgacacgccggccgcggccgcg 227 ||||||| ||||||||||||||||| Sbjct: 54159 cgccgacgcgccggccgcggccgcg 54135
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 cggccgcggccgcggccgacg 234 ||||||||||||||||||||| Sbjct: 33058 cggccgcggccgcggccgacg 33038
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 cgccggccgcggccgcggccg 231 ||||||||||||||||||||| Sbjct: 5725502 cgccggccgcggccgcggccg 5725482 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgtggtcgccgccgcgccgg 276 |||||||||||||||||||| Sbjct: 5726222 cgtggtcgccgccgcgccgg 5726203 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ccgacacgccggccgcggcc 224 |||||||||||||||||||| Sbjct: 3783188 ccgacacgccggccgcggcc 3783169
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 gtcgccgccgcgccggcgtcg 281 ||||||||||||||||||||| Sbjct: 100743 gtcgccgccgcgccggcgtcg 100763
>dbj|AK060695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D07, full insert sequence Length = 1566 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 cggccgcggccgcggccgacg 234 ||||||||||||||||||||| Sbjct: 275 cggccgcggccgcggccgacg 255
>gb|U39958.1|ZMU39958 Zea mays NADP-malic enzyme root isoform mRNA, complete cds Length = 2310 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 acgccggccgcggccgcggcc 230 ||||||||||||||||||||| Sbjct: 322 acgccggccgcggccgcggcc 302
>gb|AY315822.1| Zea mays non-photosynthetic NADP-malic enzyme mRNA, complete cds Length = 1935 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 acgccggccgcggccgcggcc 230 ||||||||||||||||||||| Sbjct: 233 acgccggccgcggccgcggcc 213
>gb|AC004195.1|AC004195 Homo sapiens clone UWGC:y24c027 from 6p21, complete sequence Length = 40878 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 39326 catgcccactgccacctccgc 39346
>gb|AC006163.1|AC006163 Homo sapiens clone UWGC:y24c203 from 6p21, complete sequence Length = 44379 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 1443 catgcccactgccacctccgc 1463
>dbj|AB088114.1| Homo sapiens STG, S, SPR1, SEEK1 genes Length = 30911 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 16177 catgcccactgccacctccgc 16157
>dbj|AB023060.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:TY1C2, complete sequence Length = 39196 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 catgcccactgccacctccgc 130 ||||||||||||||||||||| Sbjct: 22875 catgcccactgccacctccgc 22895
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gggcgacggcgaaggcgagg 330 |||||||||||||||||||| Sbjct: 44356 gggcgacggcgaaggcgagg 44337
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gcgggcgacggcgaaggcga 328 |||||||||||||||||||| Sbjct: 2212668 gcgggcgacggcgaaggcga 2212687
>gb|AY596558.1| Saccharum officinarum clone SCVPRT2074F10, complete sequence Length = 1366 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gcgccgtggtcgccgccgcgccgg 276 ||||| |||||||||||||||||| Sbjct: 1285 gcgccctggtcgccgccgcgccgg 1308
>gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, complete sequence Length = 204795 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 tgcccactgccacctccgctaatt 135 |||||||||||||||| ||||||| Sbjct: 45179 tgcccactgccacctctgctaatt 45156
>emb|CR533578.7| Zebrafish DNA sequence from clone CH211-216F21 in linkage group 16, complete sequence Length = 214872 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 acattatattgttcaggaaa 98 |||||||||||||||||||| Sbjct: 214586 acattatattgttcaggaaa 214567
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgcgccggcgtcgcttccgg 288 |||||||||||||||||||| Sbjct: 754369 cgcgccggcgtcgcttccgg 754388
>emb|AL359075.15| Human DNA sequence from clone RP11-568K15 on chromosome 1 Contains the 5' end of a gene for regucalcin gene promotor region related protein (RGPR), DKFZp686C2486, complete sequence Length = 119859 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aagaaccagcttttatttca 22 |||||||||||||||||||| Sbjct: 44611 aagaaccagcttttatttca 44630
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 gccgtggtcgccgccgcgccggcg 278 ||||||||||||||||||| |||| Sbjct: 88862 gccgtggtcgccgccgcgcaggcg 88839
>gb|AC129292.4| Mus musculus chromosome 5 clone RP24-507A8, complete sequence Length = 186200 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 tgcccactgccacctccgctaatt 135 |||||||||||||||| ||||||| Sbjct: 120072 tgcccactgccacctctgctaatt 120049
>emb|AL133259.24| Human DNA sequence from clone RP1-258E1 on chromosome 6 Contains the 3' end of the CD83 gene for CD83 antigen (activated B lymphocytes, immunoglobulin superfamily), complete sequence Length = 72979 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tccccatgcccactgccacc 125 |||||||||||||||||||| Sbjct: 26783 tccccatgcccactgccacc 26764
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cgccggccgcggccgcggcc 230 |||||||||||||||||||| Sbjct: 390433 cgccggccgcggccgcggcc 390414
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 gccggcgccgacacgccggccgcg 221 |||||||||||| ||||||||||| Sbjct: 184178 gccggcgccgacgcgccggccgcg 184201
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 gccggcgccgacacgccggccgcg 221 |||||||||||| ||||||||||| Sbjct: 112261 gccggcgccgacgcgccggccgcg 112238
>emb|AJ009858.2|PAE9858 Pseudomonas aeruginosa exaB gene (partial), exaA, exaD, exaE genes and ORF3 DNA Length = 4915 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gggcgacggcgaaggcgagg 330 |||||||||||||||||||| Sbjct: 521 gggcgacggcgaaggcgagg 502
>gb|DQ068068.1| Uncultured bacterium BAC17H8, complete sequence Length = 135294 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 gcggaagccgctttgcccga 352 |||||||||||||||||||| Sbjct: 23962 gcggaagccgctttgcccga 23943
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cgccggccgcggccgcggcc 230 |||||||||||||||||||| Sbjct: 453309 cgccggccgcggccgcggcc 453290
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 tgcccactgccacctccgct 131 |||||||||||||||||||| Sbjct: 821009 tgcccactgccacctccgct 821028
>gb|AC079054.6| Homo sapiens chromosome 8, clone RP11-158A14, complete sequence Length = 175834 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aagaaccagcttttatttca 22 |||||||||||||||||||| Sbjct: 10092 aagaaccagcttttatttca 10073
>gb|S40610.1| IgA H=immunoglobulin alpha heavy chain [chickens, mRNA, 1866 nt] Length = 1866 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 cgcggccgcggccgacgggg 237 |||||||||||||||||||| Sbjct: 1158 cgcggccgcggccgacgggg 1177
>gb|AY219357.1| Phanerochaete allantospora small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 25S ribosomal RNA gene, partial sequence Length = 565 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 gacgagcttggacttggagg 375 |||||||||||||||||||| Sbjct: 379 gacgagcttggacttggagg 398
>gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone BACR07M14, complete sequence Length = 181950 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ttttatttcaatcgaaaata 32 |||||||||||||||||||| Sbjct: 62481 ttttatttcaatcgaaaata 62462
>ref|XM_394134.2| PREDICTED: Apis mellifera similar to CG9151-PA, isoform A (LOC410657), mRNA Length = 1095 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gccggccgcggccgcggccg 231 |||||||||||||||||||| Sbjct: 594 gccggccgcggccgcggccg 575
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gggcgacggcgaaggcgagg 330 |||||||||||||||||||| Sbjct: 27679798 gggcgacggcgaaggcgagg 27679779
>gb|AF308446.1|AF308446 Paracoccus pantotrophus cytochrome c biogenesis protein CcdA (ccdA) and enoyl coenzyme A hydratase-like protein genes, complete cds; and unknown gene Length = 2774 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 244 cggcagaaggcgccgtggtcgccgccgcgccg 275 |||||| | ||||||| ||||||||||||||| Sbjct: 369 cggcagcaagcgccgtcgtcgccgccgcgccg 400
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 gcgacggcgaaggcgaggtc 332 |||||||||||||||||||| Sbjct: 102293 gcgacggcgaaggcgaggtc 102312
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 gggcgacggcgaaggcgaggtcgc 334 |||||| ||||||||||||||||| Sbjct: 55382 gggcgagggcgaaggcgaggtcgc 55359
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 aggcgccgtggtcgccgccg 270 |||||||||||||||||||| Sbjct: 5276358 aggcgccgtggtcgccgccg 5276377 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gccggcgtcgcttccggacgggcc 295 |||||||||||| ||||||||||| Sbjct: 5158963 gccggcgtcgctgccggacgggcc 5158940
>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160095 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aagaaccagcttttatttca 22 |||||||||||||||||||| Sbjct: 156374 aagaaccagcttttatttca 156393
>gb|AE004624.1| Pseudomonas aeruginosa PAO1, section 185 of 529 of the complete genome Length = 11533 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gggcgacggcgaaggcgagg 330 |||||||||||||||||||| Sbjct: 11273 gggcgacggcgaaggcgagg 11292
>gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 199945 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttatttcaatcgaaaataggaaa 37 ||||||||||| |||||||||||| Sbjct: 38200 tttatttcaatggaaaataggaaa 38223
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1792_D02 Length = 141649 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gtggtcgccgccgcgccggc 277 |||||||||||||||||||| Sbjct: 79517 gtggtcgccgccgcgccggc 79498
>dbj|AK122091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124C04, full insert sequence Length = 2036 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gggcgacggcgaaggcgagg 330 |||||||||||||||||||| Sbjct: 1069 gggcgacggcgaaggcgagg 1050
>dbj|AK067862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124K11, full insert sequence Length = 1441 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gggcgacggcgaaggcgagg 330 |||||||||||||||||||| Sbjct: 637 gggcgacggcgaaggcgagg 618
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 gccggcgccgacacgccggccgcg 221 |||||||||| ||||||||||||| Sbjct: 2633319 gccggcgccggcacgccggccgcg 2633342 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gacacgccggccgcggccgc 226 |||||||||||||||||||| Sbjct: 747012 gacacgccggccgcggccgc 747031
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full insert sequence Length = 3250 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcgacggcgaaggcgaggtc 332 |||||||||||||||||||| Sbjct: 1153 gcgacggcgaaggcgaggtc 1134
>emb|AL512348.8| Human DNA sequence from clone RP11-361M3 on chromosome 1, complete sequence Length = 173447 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aagaaccagcttttatttca 22 |||||||||||||||||||| Sbjct: 65845 aagaaccagcttttatttca 65826
>gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15 of 118 of the complete sequence Length = 228314 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ttttatttcaatcgaaaata 32 |||||||||||||||||||| Sbjct: 40876 ttttatttcaatcgaaaata 40857
>gb|AF068264.1|AF068264 Pseudomonas aeruginosa quinoprotein ethanol dehydrogenase (exaA) gene, partial cds; cytochrome c550 precursor (exaB), NAD+ dependent acetaldehyde dehydrogenase (exaC), and pyrroloquinoline quinone synthesis A (pqqA) genes, complete cds; and pyrroloquinoline quinone synthesis B (pqqB) gene, partial cds Length = 3152 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gggcgacggcgaaggcgagg 330 |||||||||||||||||||| Sbjct: 82 gggcgacggcgaaggcgagg 101
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cgccggccgcggccgcggcc 230 |||||||||||||||||||| Sbjct: 4718914 cgccggccgcggccgcggcc 4718895
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ttcaggaaatgcttcctccc 109 |||||||||||||||||||| Sbjct: 1763465 ttcaggaaatgcttcctccc 1763446 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,945,512 Number of Sequences: 3902068 Number of extensions: 3945512 Number of successful extensions: 104036 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99832 Number of HSP's gapped (non-prelim): 4201 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)