Clone Name | rbart08c04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_185062.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1636 Score = 291 bits (147), Expect = 1e-75 Identities = 237/267 (88%) Strand = Plus / Minus Query: 226 tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285 |||| ||||||||||||| || |||||||||| ||||||||||||| || ||||||| Sbjct: 898 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 839 Query: 286 aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345 ||||||||||||||||| |||||||| || |||| ||||||||||||||| || |||| Sbjct: 838 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 779 Query: 346 attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405 |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | | Sbjct: 778 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 719 Query: 406 ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465 | |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 718 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 659 Query: 466 cccccttaactgaaagtggaatgtcag 492 |||||||||||||||||||||| |||| Sbjct: 658 cccccttaactgaaagtggaatatcag 632 Score = 105 bits (53), Expect = 1e-19 Identities = 102/115 (88%), Gaps = 5/115 (4%) Strand = Plus / Minus Query: 62 aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121 ||||||||||||||||| | | ||||||||| |||||||||||||| ||||||||||||| Sbjct: 1058 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 999 Query: 122 tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176 ||||||| ||||||||| |||||||| ||| ||||| ||||| |||||||||| Sbjct: 998 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 949 Score = 63.9 bits (32), Expect = 5e-07 Identities = 45/48 (93%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 1 attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatg 48 ||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 1113 attgcttaccatatccttgcaa-tcaaagcacctttgaacaaaagatg 1067
>dbj|AK104412.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H10, full insert sequence Length = 1134 Score = 291 bits (147), Expect = 1e-75 Identities = 237/267 (88%) Strand = Plus / Minus Query: 226 tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285 |||| ||||||||||||| || |||||||||| ||||||||||||| || ||||||| Sbjct: 1004 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 945 Query: 286 aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345 ||||||||||||||||| |||||||| || |||| ||||||||||||||| || |||| Sbjct: 944 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 885 Query: 346 attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405 |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | | Sbjct: 884 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 825 Query: 406 ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465 | |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 824 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 765 Query: 466 cccccttaactgaaagtggaatgtcag 492 |||||||||||||||||||||| |||| Sbjct: 764 cccccttaactgaaagtggaatatcag 738 Score = 73.8 bits (37), Expect = 5e-10 Identities = 74/83 (89%), Gaps = 5/83 (6%) Strand = Plus / Minus Query: 94 agtggagaggatcttttaggtcttttcctgcctccttgttgttagtggatcaaaaccagc 153 |||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||| Sbjct: 1132 agtggagaggatctcttaggtcttttcctgcctcc---ttgttagtgaatcaaaacgagc 1076 Query: 154 agttttcatcttaacactttgat 176 ||||| ||||| |||||||||| Sbjct: 1075 tgtttt-atctt-acactttgat 1055
>dbj|AK068388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145C08, full insert sequence Length = 1214 Score = 291 bits (147), Expect = 1e-75 Identities = 237/267 (88%) Strand = Plus / Minus Query: 226 tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285 |||| ||||||||||||| || |||||||||| ||||||||||||| || ||||||| Sbjct: 1103 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 1044 Query: 286 aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345 ||||||||||||||||| |||||||| || |||| ||||||||||||||| || |||| Sbjct: 1043 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 984 Query: 346 attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405 |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | | Sbjct: 983 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 924 Query: 406 ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465 | |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 923 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 864 Query: 466 cccccttaactgaaagtggaatgtcag 492 |||||||||||||||||||||| |||| Sbjct: 863 cccccttaactgaaagtggaatatcag 837 Score = 48.1 bits (24), Expect = 0.028 Identities = 58/66 (87%), Gaps = 5/66 (7%) Strand = Plus / Minus Query: 111 aggtcttttcctgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacac 170 |||||||||||||||||| ||||||||| |||||||| ||| ||||| ||||| |||| Sbjct: 1214 aggtcttttcctgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acac 1160 Query: 171 tttgat 176 |||||| Sbjct: 1159 tttgat 1154
>dbj|AK067446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106A12, full insert sequence Length = 1174 Score = 291 bits (147), Expect = 1e-75 Identities = 237/267 (88%) Strand = Plus / Minus Query: 226 tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285 |||| ||||||||||||| || |||||||||| ||||||||||||| || ||||||| Sbjct: 1005 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 946 Query: 286 aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345 ||||||||||||||||| |||||||| || |||| ||||||||||||||| || |||| Sbjct: 945 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 886 Query: 346 attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405 |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | | Sbjct: 885 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 826 Query: 406 ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465 | |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 825 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 766 Query: 466 cccccttaactgaaagtggaatgtcag 492 |||||||||||||||||||||| |||| Sbjct: 765 cccccttaactgaaagtggaatatcag 739 Score = 105 bits (53), Expect = 1e-19 Identities = 102/115 (88%), Gaps = 5/115 (4%) Strand = Plus / Minus Query: 62 aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121 ||||||||||||||||| | | ||||||||| |||||||||||||| ||||||||||||| Sbjct: 1165 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 1106 Query: 122 tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176 ||||||| ||||||||| |||||||| ||| ||||| ||||| |||||||||| Sbjct: 1105 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 1056
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 258 bits (130), Expect = 2e-65 Identities = 217/246 (88%) Strand = Plus / Minus Query: 226 tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285 |||| ||||||||||||| || |||||||||| ||||||||||||| || ||||||| Sbjct: 32932850 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 32932791 Query: 286 aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345 ||||||||||||||||| |||||||| || |||| ||||||||||||||| || |||| Sbjct: 32932790 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 32932731 Query: 346 attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405 |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | | Sbjct: 32932730 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 32932671 Query: 406 ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465 | |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 32932670 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 32932611 Query: 466 ccccct 471 |||||| Sbjct: 32932610 ccccct 32932605 Score = 105 bits (53), Expect = 1e-19 Identities = 102/115 (88%), Gaps = 5/115 (4%) Strand = Plus / Minus Query: 62 aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121 ||||||||||||||||| | | ||||||||| |||||||||||||| ||||||||||||| Sbjct: 32933010 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 32932951 Query: 122 tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176 ||||||| ||||||||| |||||||| ||| ||||| ||||| |||||||||| Sbjct: 32932950 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 32932901 Score = 63.9 bits (32), Expect = 5e-07 Identities = 45/48 (93%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 1 attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatg 48 ||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 32933065 attgcttaccatatccttgcaa-tcaaagcacctttgaacaaaagatg 32933019 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 469 ccttaactgaaagtggaatgtcag 492 ||||||||||||||||||| |||| Sbjct: 32931417 ccttaactgaaagtggaatatcag 32931394
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 258 bits (130), Expect = 2e-65 Identities = 217/246 (88%) Strand = Plus / Plus Query: 226 tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285 |||| ||||||||||||| || |||||||||| ||||||||||||| || ||||||| Sbjct: 57325 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 57384 Query: 286 aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345 ||||||||||||||||| |||||||| || |||| ||||||||||||||| || |||| Sbjct: 57385 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 57444 Query: 346 attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405 |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | | Sbjct: 57445 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 57504 Query: 406 ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465 | |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 57505 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 57564 Query: 466 ccccct 471 |||||| Sbjct: 57565 ccccct 57570 Score = 105 bits (53), Expect = 1e-19 Identities = 102/115 (88%), Gaps = 5/115 (4%) Strand = Plus / Plus Query: 62 aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121 ||||||||||||||||| | | ||||||||| |||||||||||||| ||||||||||||| Sbjct: 57165 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 57224 Query: 122 tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176 ||||||| ||||||||| |||||||| ||| ||||| ||||| |||||||||| Sbjct: 57225 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 57274 Score = 63.9 bits (32), Expect = 5e-07 Identities = 45/48 (93%), Gaps = 1/48 (2%) Strand = Plus / Plus Query: 1 attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatg 48 ||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 57110 attgcttaccatatccttgcaa-tcaaagcacctttgaacaaaagatg 57156 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 469 ccttaactgaaagtggaatgtcag 492 ||||||||||||||||||| |||| Sbjct: 58758 ccttaactgaaagtggaatatcag 58781
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 258 bits (130), Expect = 2e-65 Identities = 217/246 (88%) Strand = Plus / Minus Query: 226 tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285 |||| ||||||||||||| || |||||||||| ||||||||||||| || ||||||| Sbjct: 33023360 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 33023301 Query: 286 aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345 ||||||||||||||||| |||||||| || |||| ||||||||||||||| || |||| Sbjct: 33023300 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 33023241 Query: 346 attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405 |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | | Sbjct: 33023240 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 33023181 Query: 406 ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465 | |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 33023180 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 33023121 Query: 466 ccccct 471 |||||| Sbjct: 33023120 ccccct 33023115 Score = 105 bits (53), Expect = 1e-19 Identities = 102/115 (88%), Gaps = 5/115 (4%) Strand = Plus / Minus Query: 62 aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121 ||||||||||||||||| | | ||||||||| |||||||||||||| ||||||||||||| Sbjct: 33023520 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 33023461 Query: 122 tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176 ||||||| ||||||||| |||||||| ||| ||||| ||||| |||||||||| Sbjct: 33023460 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 33023411 Score = 63.9 bits (32), Expect = 5e-07 Identities = 45/48 (93%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 1 attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatg 48 ||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 33023575 attgcttaccatatccttgcaa-tcaaagcacctttgaacaaaagatg 33023529 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 469 ccttaactgaaagtggaatgtcag 492 ||||||||||||||||||| |||| Sbjct: 33021927 ccttaactgaaagtggaatatcag 33021904
>dbj|AK066623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073L03, full insert sequence Length = 1102 Score = 246 bits (124), Expect = 6e-62 Identities = 229/264 (86%) Strand = Plus / Minus Query: 229 tgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtgaat 288 ||||||||||||| | || ||||||||||||||||||||| || |||||||| |||| Sbjct: 421 tgttactatactatgaaggagtgttgggttcaggcttcactgagtgtccgtcctgcgaat 362 Query: 289 gttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttggatt 348 | |||||||||||||| ||||| |||||||||| |||||||||||| || || ||||||| Sbjct: 361 gctgtgtgtcatagatcgccatcgcaagagagattggcatcatgcatagtgctttggatt 302 Query: 349 ggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttctccg 408 |||| ||||||||||| || |||||||| || |||||||||||||| ||||| || || | Sbjct: 301 ggaggaattgcattgctgctccgatgtcttcttccatcagcttcgctacctgcttttctg 242 Query: 409 tgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgcttccc 468 ||||||| ||||||||||||||||| ||||| ||||||| |||||| || ||||| |||| Sbjct: 241 tgccatcggttgaccacttttcccaaatctgttgtttgctcccactgtcacttgcctccc 182 Query: 469 ccttaactgaaagtggaatgtcag 492 |||||||||| | |||||| |||| Sbjct: 181 ccttaactgagattggaatatcag 158
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 228 bits (115), Expect = 1e-56 Identities = 211/243 (86%) Strand = Plus / Minus Query: 229 tgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtgaat 288 ||||||||||||| | || ||||||||||||||||||||| || |||||||| |||| Sbjct: 4373663 tgttactatactatgaaggagtgttgggttcaggcttcactgagtgtccgtcctgcgaat 4373604 Query: 289 gttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttggatt 348 | |||||||||||||| ||||| |||||||||| |||||||||||| || || ||||||| Sbjct: 4373603 gctgtgtgtcatagatcgccatcgcaagagagattggcatcatgcatagtgctttggatt 4373544 Query: 349 ggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttctccg 408 |||| ||||||||||| || |||||||| || |||||||||||||| ||||| || || | Sbjct: 4373543 ggaggaattgcattgctgctccgatgtcttcttccatcagcttcgctacctgcttttctg 4373484 Query: 409 tgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgcttccc 468 ||||||| ||||||||||||||||| ||||| ||||||| |||||| || ||||| |||| Sbjct: 4373483 tgccatcggttgaccacttttcccaaatctgttgtttgctcccactgtcacttgcctccc 4373424 Query: 469 cct 471 ||| Sbjct: 4373423 cct 4373421
>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1506_G02 Length = 106742 Score = 228 bits (115), Expect = 1e-56 Identities = 211/243 (86%) Strand = Plus / Minus Query: 229 tgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtgaat 288 ||||||||||||| | || ||||||||||||||||||||| || |||||||| |||| Sbjct: 13512 tgttactatactatgaaggagtgttgggttcaggcttcactgagtgtccgtcctgcgaat 13453 Query: 289 gttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttggatt 348 | |||||||||||||| ||||| |||||||||| |||||||||||| || || ||||||| Sbjct: 13452 gctgtgtgtcatagatcgccatcgcaagagagattggcatcatgcatagtgctttggatt 13393 Query: 349 ggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttctccg 408 |||| ||||||||||| || |||||||| || |||||||||||||| ||||| || || | Sbjct: 13392 ggaggaattgcattgctgctccgatgtcttcttccatcagcttcgctacctgcttttctg 13333 Query: 409 tgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgcttccc 468 ||||||| ||||||||||||||||| ||||| ||||||| |||||| || ||||| |||| Sbjct: 13332 tgccatcggttgaccacttttcccaaatctgttgtttgctcccactgtcacttgcctccc 13273 Query: 469 cct 471 ||| Sbjct: 13272 cct 13270
>gb|AY108894.1| Zea mays PCO139297 mRNA sequence Length = 1054 Score = 214 bits (108), Expect = 2e-52 Identities = 216/252 (85%) Strand = Plus / Plus Query: 233 actatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtgaatgttg 292 ||||||||||| || |||||||||| || || |||||||| |||||||| |||||||| Sbjct: 662 actatactaggaaggagtgttgggttctggttttactggttgtccgtcctgcgaatgttg 721 Query: 293 tgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttggattggag 352 ||||||||||| |||||||| || |||| |||||||||||||| || ||||| ||||| Sbjct: 722 cgtgtcatagattgccatggcgagcgagatgggcatcatgcagagtgctttggactggag 781 Query: 353 aaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttctccgtgcc 412 |||||||| || || || ||||| || ||||||||||| || | |||| | || ||||| Sbjct: 782 gaattgcatcgctgccccaatgtcttcttccatcagctttgcgatctgtctttctgtgcc 841 Query: 413 atccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgcttccccctt 472 |||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||| Sbjct: 842 gtccgttgaccacttctcccaaatctgctgtttgctcccactatcacttgcttccccctt 901 Query: 473 aactgaaagtgg 484 |||||||||||| Sbjct: 902 aactgaaagtgg 913 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/144 (85%), Gaps = 8/144 (5%) Strand = Plus / Plus Query: 1 attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatggaaaaggggtag 60 ||||||||||||||||||| || |||||||||||||||||||||||| | |||||| Sbjct: 433 attgcttaccatatccttgcaa-ttaaagcacctttgaacaaaagatcggaaaggg---a 488 Query: 61 taggtgacatcatatacc-gtcgatacaacttccagtggagaggatcttttaggtctttt 119 ||| || |||||||||| | | ||||||||| |||||||||||||||||||||||||| Sbjct: 489 aaggggatatcatataccatttggtacaacttcaagtggagaggatcttttaggtctttt 548 Query: 120 ---cctgcctccttgttgttagtg 140 |||||||||| ||||||||| Sbjct: 549 ttccctgcctcctccttgttagtg 572
>dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375a, complete sequence Length = 58157 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 324 ggcatcatgcagagcgccttggattggagaaattgcattgcagcaccgatgtcctcgtcc 383 ||||| |||||||| ||||| ||||| ||||||||||| ||||| || | | || ||| Sbjct: 38828 ggcatgatgcagagtgcctttgattgaagaaattgcatggcagccccaacattttcttcc 38887 Query: 384 atcagcttcgcaacctgtttctccgtgccatccgttgaccacttttccca 433 || ||||| || |||||||| || || ||||| |||||||||| ||||| Sbjct: 38888 ataagcttagctacctgtttttctgtaccatcatttgaccacttgtccca 38937
>emb|BX293560.3| Human DNA sequence from clone RP11-40F8 on chromosome X Contains a novel gene and the 3' end of a novel gene, complete sequence Length = 155656 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 472 taactgaaagtggaatgtcagaaa 495 |||||||||||||||||||||||| Sbjct: 63617 taactgaaagtggaatgtcagaaa 63640
>ref|XM_468258.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1392 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 372 atgtcctcgtccatcagcttcgcaacctgtttctccgt 409 |||||||| |||||||||||||| ||||| | |||||| Sbjct: 1088 atgtcctcctccatcagcttcgccacctgctgctccgt 1051
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 372 atgtcctcgtccatcagcttcgcaacctgtttctccgt 409 |||||||| |||||||||||||| ||||| | |||||| Sbjct: 33855965 atgtcctcctccatcagcttcgccacctgctgctccgt 33855928
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 372 atgtcctcgtccatcagcttcgcaacctgtttctccgt 409 |||||||| |||||||||||||| ||||| | |||||| Sbjct: 72543 atgtcctcctccatcagcttcgccacctgctgctccgt 72506
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_E04 Length = 133621 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 372 atgtcctcgtccatcagcttcgcaacctgtttctccgt 409 |||||||| |||||||||||||| ||||| | |||||| Sbjct: 14928 atgtcctcctccatcagcttcgccacctgctgctccgt 14891
>gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete sequence Length = 152747 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 taggcagtgttgttgggttcaggct 264 |||||||||||||||| |||||||| Sbjct: 53411 taggcagtgttgttggcttcaggct 53435
>gb|AC119111.5| Rattus norvegicus 1 BAC CH230-300G8 (Children's Hospital Oakland Research Institute) complete sequence Length = 195920 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ctttgaacaaaagatggaaa 52 |||||||||||||||||||| Sbjct: 188357 ctttgaacaaaagatggaaa 188338
>emb|AL683819.19| Mouse DNA sequence from clone RP23-126J10 on chromosome 11 Contains part of the Car10 gene for carbonic anhydrase 10, complete sequence Length = 134741 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ccttgaaaattaaagcacct 34 |||||||||||||||||||| Sbjct: 15523 ccttgaaaattaaagcacct 15542
>gb|AC103077.6| Rattus norvegicus BAC CH230-224J5 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 200930 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ctttgaacaaaagatggaaa 52 |||||||||||||||||||| Sbjct: 102798 ctttgaacaaaagatggaaa 102779
>emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 in linkage group 22, complete sequence Length = 195552 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gagactggcatcatgcagag 337 |||||||||||||||||||| Sbjct: 61489 gagactggcatcatgcagag 61470
>gb|AC101922.12| Mus musculus chromosome 3, clone RP24-182A8, complete sequence Length = 173400 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gatggaaaaggggtagtagg 64 |||||||||||||||||||| Sbjct: 149489 gatggaaaaggggtagtagg 149470
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaattaaagcacctttgaac 40 |||||||||||||||||||| Sbjct: 8625336 aaattaaagcacctttgaac 8625317
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaattaaagcacctttgaac 40 |||||||||||||||||||| Sbjct: 137247 aaattaaagcacctttgaac 137228
>gb|AC130926.4| Rattus norvegicus BAC CH230-39O11 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 217219 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ctttgaacaaaagatggaaa 52 |||||||||||||||||||| Sbjct: 160742 ctttgaacaaaagatggaaa 160761
>gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, complete sequence Length = 217366 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gatggaaaaggggtagtagg 64 |||||||||||||||||||| Sbjct: 165864 gatggaaaaggggtagtagg 165883
>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence Length = 223030 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 cttaactgaaagtggaatgt 489 |||||||||||||||||||| Sbjct: 187926 cttaactgaaagtggaatgt 187945
>emb|AL691438.16| Mouse DNA sequence from clone RP23-243L4 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2, complete sequence Length = 197300 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 aaaggggtagtaggtgacat 70 |||||||||||||||||||| Sbjct: 143195 aaaggggtagtaggtgacat 143214
>gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone rp23-141k23, complete sequence Length = 188804 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cttaactgaaagtggaatgt 489 |||||||||||||||||||| Sbjct: 165372 cttaactgaaagtggaatgt 165353 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,510,157 Number of Sequences: 3902068 Number of extensions: 4510157 Number of successful extensions: 79442 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79256 Number of HSP's gapped (non-prelim): 181 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)