ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_185062.1| Oryza sativa (japonica cultivar-group), mRNA 291 1e-75
2dbj|AK104412.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 1e-75
3dbj|AK068388.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 1e-75
4dbj|AK067446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 1e-75
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 258 2e-65
6gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genom... 258 2e-65
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 258 2e-65
8dbj|AK066623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 6e-62
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
10dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
11gb|AY108894.1| Zea mays PCO139297 mRNA sequence 214 2e-52
12dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone... 52 0.002
13emb|BX293560.3| Human DNA sequence from clone RP11-40F8 on chrom... 48 0.028
14ref|XM_468258.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.43
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
16dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
17dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
18gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete... 42 1.7
19gb|AC119111.5| Rattus norvegicus 1 BAC CH230-300G8 (Children's H... 40 6.7
20emb|AL683819.19| Mouse DNA sequence from clone RP23-126J10 on ch... 40 6.7
21gb|AC103077.6| Rattus norvegicus BAC CH230-224J5 (Children's Ho... 40 6.7
22emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 i... 40 6.7
23gb|AC101922.12| Mus musculus chromosome 3, clone RP24-182A8, com... 40 6.7
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
25dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
26gb|AC130926.4| Rattus norvegicus BAC CH230-39O11 (Children's Ho... 40 6.7
27gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, compl... 40 6.7
28gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, compl... 40 6.7
29emb|AL691438.16| Mouse DNA sequence from clone RP23-243L4 on chr... 40 6.7
30gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone... 40 6.7

>ref|NM_185062.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1636

 Score =  291 bits (147), Expect = 1e-75
 Identities = 237/267 (88%)
 Strand = Plus / Minus

                                                                       
Query: 226 tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285
           |||| ||||||||||||| ||   ||||||||||  ||||||||||||| || |||||||
Sbjct: 898 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 839

                                                                       
Query: 286 aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345
             ||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||
Sbjct: 838 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 779

                                                                       
Query: 346 attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405
           |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | |
Sbjct: 778 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 719

                                                                       
Query: 406 ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465
           | |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 718 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 659

                                      
Query: 466 cccccttaactgaaagtggaatgtcag 492
           |||||||||||||||||||||| ||||
Sbjct: 658 cccccttaactgaaagtggaatatcag 632



 Score =  105 bits (53), Expect = 1e-19
 Identities = 102/115 (88%), Gaps = 5/115 (4%)
 Strand = Plus / Minus

                                                                        
Query: 62   aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121
            ||||||||||||||||| | | ||||||||| |||||||||||||| |||||||||||||
Sbjct: 1058 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 999

                                                                   
Query: 122  tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176
            |||||||   ||||||||| |||||||| ||| ||||| ||||| ||||||||||
Sbjct: 998  tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 949



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 45/48 (93%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                            
Query: 1    attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatg 48
            ||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 1113 attgcttaccatatccttgcaa-tcaaagcacctttgaacaaaagatg 1067



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>dbj|AK104412.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H10, full
            insert sequence
          Length = 1134

 Score =  291 bits (147), Expect = 1e-75
 Identities = 237/267 (88%)
 Strand = Plus / Minus

                                                                        
Query: 226  tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285
            |||| ||||||||||||| ||   ||||||||||  ||||||||||||| || |||||||
Sbjct: 1004 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 945

                                                                        
Query: 286  aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345
              ||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||
Sbjct: 944  tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 885

                                                                        
Query: 346  attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405
            |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | |
Sbjct: 884  attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 825

                                                                        
Query: 406  ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465
            | |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 824  ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 765

                                       
Query: 466  cccccttaactgaaagtggaatgtcag 492
            |||||||||||||||||||||| ||||
Sbjct: 764  cccccttaactgaaagtggaatatcag 738



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 74/83 (89%), Gaps = 5/83 (6%)
 Strand = Plus / Minus

                                                                        
Query: 94   agtggagaggatcttttaggtcttttcctgcctccttgttgttagtggatcaaaaccagc 153
            |||||||||||||| ||||||||||||||||||||   ||||||||| |||||||| |||
Sbjct: 1132 agtggagaggatctcttaggtcttttcctgcctcc---ttgttagtgaatcaaaacgagc 1076

                                   
Query: 154  agttttcatcttaacactttgat 176
             ||||| ||||| ||||||||||
Sbjct: 1075 tgtttt-atctt-acactttgat 1055



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>dbj|AK068388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145C08, full
            insert sequence
          Length = 1214

 Score =  291 bits (147), Expect = 1e-75
 Identities = 237/267 (88%)
 Strand = Plus / Minus

                                                                        
Query: 226  tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285
            |||| ||||||||||||| ||   ||||||||||  ||||||||||||| || |||||||
Sbjct: 1103 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 1044

                                                                        
Query: 286  aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345
              ||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||
Sbjct: 1043 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 984

                                                                        
Query: 346  attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405
            |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | |
Sbjct: 983  attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 924

                                                                        
Query: 406  ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465
            | |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 923  ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 864

                                       
Query: 466  cccccttaactgaaagtggaatgtcag 492
            |||||||||||||||||||||| ||||
Sbjct: 863  cccccttaactgaaagtggaatatcag 837



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 58/66 (87%), Gaps = 5/66 (7%)
 Strand = Plus / Minus

                                                                        
Query: 111  aggtcttttcctgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacac 170
            ||||||||||||||||||   ||||||||| |||||||| ||| ||||| ||||| ||||
Sbjct: 1214 aggtcttttcctgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acac 1160

                  
Query: 171  tttgat 176
            ||||||
Sbjct: 1159 tttgat 1154



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>dbj|AK067446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106A12, full
            insert sequence
          Length = 1174

 Score =  291 bits (147), Expect = 1e-75
 Identities = 237/267 (88%)
 Strand = Plus / Minus

                                                                        
Query: 226  tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285
            |||| ||||||||||||| ||   ||||||||||  ||||||||||||| || |||||||
Sbjct: 1005 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 946

                                                                        
Query: 286  aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345
              ||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||
Sbjct: 945  tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 886

                                                                        
Query: 346  attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405
            |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | |
Sbjct: 885  attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 826

                                                                        
Query: 406  ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465
            | |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 825  ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 766

                                       
Query: 466  cccccttaactgaaagtggaatgtcag 492
            |||||||||||||||||||||| ||||
Sbjct: 765  cccccttaactgaaagtggaatatcag 739



 Score =  105 bits (53), Expect = 1e-19
 Identities = 102/115 (88%), Gaps = 5/115 (4%)
 Strand = Plus / Minus

                                                                        
Query: 62   aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121
            ||||||||||||||||| | | ||||||||| |||||||||||||| |||||||||||||
Sbjct: 1165 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 1106

                                                                   
Query: 122  tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176
            |||||||   ||||||||| |||||||| ||| ||||| ||||| ||||||||||
Sbjct: 1105 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 1056



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  258 bits (130), Expect = 2e-65
 Identities = 217/246 (88%)
 Strand = Plus / Minus

                                                                            
Query: 226      tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285
                |||| ||||||||||||| ||   ||||||||||  ||||||||||||| || |||||||
Sbjct: 32932850 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 32932791

                                                                            
Query: 286      aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345
                  ||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||
Sbjct: 32932790 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 32932731

                                                                            
Query: 346      attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405
                |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | |
Sbjct: 32932730 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 32932671

                                                                            
Query: 406      ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465
                | |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 32932670 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 32932611

                      
Query: 466      ccccct 471
                ||||||
Sbjct: 32932610 ccccct 32932605



 Score =  105 bits (53), Expect = 1e-19
 Identities = 102/115 (88%), Gaps = 5/115 (4%)
 Strand = Plus / Minus

                                                                            
Query: 62       aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121
                ||||||||||||||||| | | ||||||||| |||||||||||||| |||||||||||||
Sbjct: 32933010 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 32932951

                                                                       
Query: 122      tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176
                |||||||   ||||||||| |||||||| ||| ||||| ||||| ||||||||||
Sbjct: 32932950 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 32932901



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 45/48 (93%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                                
Query: 1        attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatg 48
                ||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 32933065 attgcttaccatatccttgcaa-tcaaagcacctttgaacaaaagatg 32933019



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 469      ccttaactgaaagtggaatgtcag 492
                ||||||||||||||||||| ||||
Sbjct: 32931417 ccttaactgaaagtggaatatcag 32931394



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>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete
             sequence
          Length = 151479

 Score =  258 bits (130), Expect = 2e-65
 Identities = 217/246 (88%)
 Strand = Plus / Plus

                                                                         
Query: 226   tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285
             |||| ||||||||||||| ||   ||||||||||  ||||||||||||| || |||||||
Sbjct: 57325 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 57384

                                                                         
Query: 286   aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345
               ||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||
Sbjct: 57385 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 57444

                                                                         
Query: 346   attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405
             |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | |
Sbjct: 57445 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 57504

                                                                         
Query: 406   ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465
             | |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 57505 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 57564

                   
Query: 466   ccccct 471
             ||||||
Sbjct: 57565 ccccct 57570



 Score =  105 bits (53), Expect = 1e-19
 Identities = 102/115 (88%), Gaps = 5/115 (4%)
 Strand = Plus / Plus

                                                                         
Query: 62    aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121
             ||||||||||||||||| | | ||||||||| |||||||||||||| |||||||||||||
Sbjct: 57165 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 57224

                                                                    
Query: 122   tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176
             |||||||   ||||||||| |||||||| ||| ||||| ||||| ||||||||||
Sbjct: 57225 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 57274



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 45/48 (93%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                             
Query: 1     attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatg 48
             ||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 57110 attgcttaccatatccttgcaa-tcaaagcacctttgaacaaaagatg 57156



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 469   ccttaactgaaagtggaatgtcag 492
             ||||||||||||||||||| ||||
Sbjct: 58758 ccttaactgaaagtggaatatcag 58781



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  258 bits (130), Expect = 2e-65
 Identities = 217/246 (88%)
 Strand = Plus / Minus

                                                                            
Query: 226      tgctgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtg 285
                |||| ||||||||||||| ||   ||||||||||  ||||||||||||| || |||||||
Sbjct: 33023360 tgctattactatactaggaaggagtgttgggttcgtgcttcactggttgtccatcctgtg 33023301

                                                                            
Query: 286      aatgttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttgg 345
                  ||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||
Sbjct: 33023300 tttgttgtgtgtcatagattgccatggcgagcgagattggcatcatgcagagtgctttgg 33023241

                                                                            
Query: 346      attggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttct 405
                |||||||||||||||| || || |||||||| || |||||||||||||| |||||| | |
Sbjct: 33023240 attggagaaattgcatcgctgccccgatgtcttcttccatcagcttcgctacctgtcttt 33023181

                                                                            
Query: 406      ccgtgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgctt 465
                | |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 33023180 ctgtgccatccgttgaccacttttcccaaatctgttggttgcccccactatcgcttgctt 33023121

                      
Query: 466      ccccct 471
                ||||||
Sbjct: 33023120 ccccct 33023115



 Score =  105 bits (53), Expect = 1e-19
 Identities = 102/115 (88%), Gaps = 5/115 (4%)
 Strand = Plus / Minus

                                                                            
Query: 62       aggtgacatcatataccgtcgatacaacttccagtggagaggatcttttaggtcttttcc 121
                ||||||||||||||||| | | ||||||||| |||||||||||||| |||||||||||||
Sbjct: 33023520 aggtgacatcatataccattggtacaacttcaagtggagaggatctcttaggtcttttcc 33023461

                                                                       
Query: 122      tgcctccttgttgttagtggatcaaaaccagcagttttcatcttaacactttgat 176
                |||||||   ||||||||| |||||||| ||| ||||| ||||| ||||||||||
Sbjct: 33023460 tgcctcc---ttgttagtgaatcaaaacgagctgtttt-atctt-acactttgat 33023411



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 45/48 (93%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                                
Query: 1        attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatg 48
                ||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 33023575 attgcttaccatatccttgcaa-tcaaagcacctttgaacaaaagatg 33023529



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 469      ccttaactgaaagtggaatgtcag 492
                ||||||||||||||||||| ||||
Sbjct: 33021927 ccttaactgaaagtggaatatcag 33021904



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>dbj|AK066623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073L03, full
           insert sequence
          Length = 1102

 Score =  246 bits (124), Expect = 6e-62
 Identities = 229/264 (86%)
 Strand = Plus / Minus

                                                                       
Query: 229 tgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtgaat 288
           ||||||||||||| | ||   |||||||||||||||||||||  || |||||||| ||||
Sbjct: 421 tgttactatactatgaaggagtgttgggttcaggcttcactgagtgtccgtcctgcgaat 362

                                                                       
Query: 289 gttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttggatt 348
           | |||||||||||||| ||||| |||||||||| |||||||||||| || || |||||||
Sbjct: 361 gctgtgtgtcatagatcgccatcgcaagagagattggcatcatgcatagtgctttggatt 302

                                                                       
Query: 349 ggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttctccg 408
           |||| ||||||||||| || |||||||| || |||||||||||||| ||||| || || |
Sbjct: 301 ggaggaattgcattgctgctccgatgtcttcttccatcagcttcgctacctgcttttctg 242

                                                                       
Query: 409 tgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgcttccc 468
           ||||||| ||||||||||||||||| ||||| ||||||| |||||| || ||||| ||||
Sbjct: 241 tgccatcggttgaccacttttcccaaatctgttgtttgctcccactgtcacttgcctccc 182

                                   
Query: 469 ccttaactgaaagtggaatgtcag 492
           |||||||||| | |||||| ||||
Sbjct: 181 ccttaactgagattggaatatcag 158



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  228 bits (115), Expect = 1e-56
 Identities = 211/243 (86%)
 Strand = Plus / Minus

                                                                           
Query: 229     tgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtgaat 288
               ||||||||||||| | ||   |||||||||||||||||||||  || |||||||| ||||
Sbjct: 4373663 tgttactatactatgaaggagtgttgggttcaggcttcactgagtgtccgtcctgcgaat 4373604

                                                                           
Query: 289     gttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttggatt 348
               | |||||||||||||| ||||| |||||||||| |||||||||||| || || |||||||
Sbjct: 4373603 gctgtgtgtcatagatcgccatcgcaagagagattggcatcatgcatagtgctttggatt 4373544

                                                                           
Query: 349     ggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttctccg 408
               |||| ||||||||||| || |||||||| || |||||||||||||| ||||| || || |
Sbjct: 4373543 ggaggaattgcattgctgctccgatgtcttcttccatcagcttcgctacctgcttttctg 4373484

                                                                           
Query: 409     tgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgcttccc 468
               ||||||| ||||||||||||||||| ||||| ||||||| |||||| || ||||| ||||
Sbjct: 4373483 tgccatcggttgaccacttttcccaaatctgttgtttgctcccactgtcacttgcctccc 4373424

                  
Query: 469     cct 471
               |||
Sbjct: 4373423 cct 4373421



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>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1506_G02
          Length = 106742

 Score =  228 bits (115), Expect = 1e-56
 Identities = 211/243 (86%)
 Strand = Plus / Minus

                                                                         
Query: 229   tgttactatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtgaat 288
             ||||||||||||| | ||   |||||||||||||||||||||  || |||||||| ||||
Sbjct: 13512 tgttactatactatgaaggagtgttgggttcaggcttcactgagtgtccgtcctgcgaat 13453

                                                                         
Query: 289   gttgtgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttggatt 348
             | |||||||||||||| ||||| |||||||||| |||||||||||| || || |||||||
Sbjct: 13452 gctgtgtgtcatagatcgccatcgcaagagagattggcatcatgcatagtgctttggatt 13393

                                                                         
Query: 349   ggagaaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttctccg 408
             |||| ||||||||||| || |||||||| || |||||||||||||| ||||| || || |
Sbjct: 13392 ggaggaattgcattgctgctccgatgtcttcttccatcagcttcgctacctgcttttctg 13333

                                                                         
Query: 409   tgccatccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgcttccc 468
             ||||||| ||||||||||||||||| ||||| ||||||| |||||| || ||||| ||||
Sbjct: 13332 tgccatcggttgaccacttttcccaaatctgttgtttgctcccactgtcacttgcctccc 13273

                
Query: 469   cct 471
             |||
Sbjct: 13272 cct 13270



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>gb|AY108894.1| Zea mays PCO139297 mRNA sequence
          Length = 1054

 Score =  214 bits (108), Expect = 2e-52
 Identities = 216/252 (85%)
 Strand = Plus / Plus

                                                                       
Query: 233 actatactaggcagtgttgttgggttcaggcttcactggttggccgtcctgtgaatgttg 292
           ||||||||||| ||   |||||||||| || || |||||||| |||||||| ||||||||
Sbjct: 662 actatactaggaaggagtgttgggttctggttttactggttgtccgtcctgcgaatgttg 721

                                                                       
Query: 293 tgtgtcatagatagccatggcaagagagactggcatcatgcagagcgccttggattggag 352
            ||||||||||| |||||||| || ||||  |||||||||||||| || ||||| |||||
Sbjct: 722 cgtgtcatagattgccatggcgagcgagatgggcatcatgcagagtgctttggactggag 781

                                                                       
Query: 353 aaattgcattgcagcaccgatgtcctcgtccatcagcttcgcaacctgtttctccgtgcc 412
            |||||||| || || || ||||| || ||||||||||| || | |||| | || |||||
Sbjct: 782 gaattgcatcgctgccccaatgtcttcttccatcagctttgcgatctgtctttctgtgcc 841

                                                                       
Query: 413 atccgttgaccacttttcccatatctgctgtttgcccccactatcgcttgcttccccctt 472
            |||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct: 842 gtccgttgaccacttctcccaaatctgctgtttgctcccactatcacttgcttccccctt 901

                       
Query: 473 aactgaaagtgg 484
           ||||||||||||
Sbjct: 902 aactgaaagtgg 913



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/144 (85%), Gaps = 8/144 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcttaccatatccttgaaaattaaagcacctttgaacaaaagatggaaaaggggtag 60
           ||||||||||||||||||| || |||||||||||||||||||||||| | ||||||    
Sbjct: 433 attgcttaccatatccttgcaa-ttaaagcacctttgaacaaaagatcggaaaggg---a 488

                                                                       
Query: 61  taggtgacatcatatacc-gtcgatacaacttccagtggagaggatcttttaggtctttt 119
            ||| || ||||||||||  | | ||||||||| ||||||||||||||||||||||||||
Sbjct: 489 aaggggatatcatataccatttggtacaacttcaagtggagaggatcttttaggtctttt 548

                                   
Query: 120 ---cctgcctccttgttgttagtg 140
              ||||||||||  |||||||||
Sbjct: 549 ttccctgcctcctccttgttagtg 572



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>dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375a,
             complete sequence
          Length = 58157

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 89/110 (80%)
 Strand = Plus / Plus

                                                                         
Query: 324   ggcatcatgcagagcgccttggattggagaaattgcattgcagcaccgatgtcctcgtcc 383
             ||||| |||||||| ||||| ||||| ||||||||||| ||||| || |  |  || |||
Sbjct: 38828 ggcatgatgcagagtgcctttgattgaagaaattgcatggcagccccaacattttcttcc 38887

                                                               
Query: 384   atcagcttcgcaacctgtttctccgtgccatccgttgaccacttttccca 433
             || ||||| || |||||||| || || |||||  |||||||||| |||||
Sbjct: 38888 ataagcttagctacctgtttttctgtaccatcatttgaccacttgtccca 38937



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>emb|BX293560.3| Human DNA sequence from clone RP11-40F8 on chromosome X Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 155656

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 472   taactgaaagtggaatgtcagaaa 495
             ||||||||||||||||||||||||
Sbjct: 63617 taactgaaagtggaatgtcagaaa 63640



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>ref|XM_468258.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1392

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 372  atgtcctcgtccatcagcttcgcaacctgtttctccgt 409
            |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 1088 atgtcctcctccatcagcttcgccacctgctgctccgt 1051



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 372      atgtcctcgtccatcagcttcgcaacctgtttctccgt 409
                |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 33855965 atgtcctcctccatcagcttcgccacctgctgctccgt 33855928



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>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1695_H09
          Length = 114721

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 372   atgtcctcgtccatcagcttcgcaacctgtttctccgt 409
             |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 72543 atgtcctcctccatcagcttcgccacctgctgctccgt 72506



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>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_E04
          Length = 133621

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 372   atgtcctcgtccatcagcttcgcaacctgtttctccgt 409
             |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 14928 atgtcctcctccatcagcttcgccacctgctgctccgt 14891



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>gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete sequence
          Length = 152747

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 240   taggcagtgttgttgggttcaggct 264
             |||||||||||||||| ||||||||
Sbjct: 53411 taggcagtgttgttggcttcaggct 53435



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>gb|AC119111.5| Rattus norvegicus 1 BAC CH230-300G8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 195920

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     ctttgaacaaaagatggaaa 52
              ||||||||||||||||||||
Sbjct: 188357 ctttgaacaaaagatggaaa 188338



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>emb|AL683819.19| Mouse DNA sequence from clone RP23-126J10 on chromosome 11 Contains
             part of the Car10 gene for carbonic anhydrase 10, complete
             sequence
          Length = 134741

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    ccttgaaaattaaagcacct 34
             ||||||||||||||||||||
Sbjct: 15523 ccttgaaaattaaagcacct 15542



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>gb|AC103077.6| Rattus norvegicus  BAC CH230-224J5 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 200930

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     ctttgaacaaaagatggaaa 52
              ||||||||||||||||||||
Sbjct: 102798 ctttgaacaaaagatggaaa 102779



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>emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 in linkage group 22,
             complete sequence
          Length = 195552

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   gagactggcatcatgcagag 337
             ||||||||||||||||||||
Sbjct: 61489 gagactggcatcatgcagag 61470



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>gb|AC101922.12| Mus musculus chromosome 3, clone RP24-182A8, complete sequence
          Length = 173400

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     gatggaaaaggggtagtagg 64
              ||||||||||||||||||||
Sbjct: 149489 gatggaaaaggggtagtagg 149470



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 21      aaattaaagcacctttgaac 40
               ||||||||||||||||||||
Sbjct: 8625336 aaattaaagcacctttgaac 8625317



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>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0087F21
          Length = 187401

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     aaattaaagcacctttgaac 40
              ||||||||||||||||||||
Sbjct: 137247 aaattaaagcacctttgaac 137228



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>gb|AC130926.4| Rattus norvegicus  BAC CH230-39O11 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 217219

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ctttgaacaaaagatggaaa 52
              ||||||||||||||||||||
Sbjct: 160742 ctttgaacaaaagatggaaa 160761



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>gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, complete sequence
          Length = 217366

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     gatggaaaaggggtagtagg 64
              ||||||||||||||||||||
Sbjct: 165864 gatggaaaaggggtagtagg 165883



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>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence
          Length = 223030

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 470    cttaactgaaagtggaatgt 489
              ||||||||||||||||||||
Sbjct: 187926 cttaactgaaagtggaatgt 187945



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>emb|AL691438.16| Mouse DNA sequence from clone RP23-243L4 on chromosome 4 Contains part of
              the Astn2 gene for astrotactin 2, complete sequence
          Length = 197300

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     aaaggggtagtaggtgacat 70
              ||||||||||||||||||||
Sbjct: 143195 aaaggggtagtaggtgacat 143214



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>gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone rp23-141k23, complete
              sequence
          Length = 188804

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 470    cttaactgaaagtggaatgt 489
              ||||||||||||||||||||
Sbjct: 165372 cttaactgaaagtggaatgt 165353


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,510,157
Number of Sequences: 3902068
Number of extensions: 4510157
Number of successful extensions: 79442
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79256
Number of HSP's gapped (non-prelim): 181
length of query: 496
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 474
effective length of database: 17,147,199,772
effective search space: 8127772691928
effective search space used: 8127772691928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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