>ref|XM_474251.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 930

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 348 cccttccgctgttcggtctcgccatgggcaaagtggcagcgctcgccaaacgtgcaggta 407
           ||||||||||| ||| |||||||||| || |||||||| || ||||| ||||||||||| 
Sbjct: 920 cccttccgctgctcgttctcgccatgagcgaagtggcatcggtcgccgaacgtgcaggtt 861

                           
Query: 408 cccttgaggaagttct 423
           ||||| | ||||||||
Sbjct: 860 cccttcacgaagttct 845

>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                         
Query: 348   cccttccgctgttcggtctcgccatgggcaaagtggcagcgctcgccaaacgtgcaggta 407
             ||||||||||| ||| |||||||||| || |||||||| || ||||| ||||||||||| 
Sbjct: 70614 cccttccgctgctcgttctcgccatgagcgaagtggcatcggtcgccgaacgtgcaggtt 70555

                             
Query: 408   cccttgaggaagttct 423
             ||||| | ||||||||
Sbjct: 70554 cccttcacgaagttct 70539

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                            
Query: 348      cccttccgctgttcggtctcgccatgggcaaagtggcagcgctcgccaaacgtgcaggta 407
                ||||||||||| ||| |||||||||| || |||||||| || ||||| ||||||||||| 
Sbjct: 34019718 cccttccgctgctcgttctcgccatgagcgaagtggcatcggtcgccgaacgtgcaggtt 34019659

                                
Query: 408      cccttgaggaagttct 423
                ||||| | ||||||||
Sbjct: 34019658 cccttcacgaagttct 34019643

>dbj|AK121951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K04, full
            insert sequence
          Length = 1349

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 348  cccttccgctgttcggtctcgccatgggcaaagtggcagcgctcgccaaacgtgcaggta 407
            ||||||||||| ||| |||||||||| || |||||||| || ||||| ||||||||||| 
Sbjct: 1042 cccttccgctgctcgttctcgccatgagcgaagtggcatcggtcgccgaacgtgcaggtt 983

                            
Query: 408  cccttgaggaagttct 423
            ||||| | ||||||||
Sbjct: 982  cccttcacgaagttct 967

>gb|AY112248.1| Zea mays CL633_5 mRNA sequence
          Length = 1172

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 352 tccgctgttcggtctcgccatgggcaaagtggcagcgctcgccaaacgtgcaggtaccct 411
           ||||||| ||| |||||||||||||||||||||| |||||||| || || || | |||||
Sbjct: 954 tccgctgctcgttctcgccatgggcaaagtggcaccgctcgccgaaagtacaagcaccct 895

                       
Query: 412 tgaggaagttct 423
           | | ||||||||
Sbjct: 894 tcacgaagttct 883

>gb|AY103670.1| Zea mays PCO086234 mRNA sequence
          Length = 1256

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 352 tccgctgttcggtctcgccatgggcaaagtggcagcgctcgccaaacgtgcaggtaccct 411
           ||||||| || |||||||||||||| |||||||| || || ||||| || |||| |||||
Sbjct: 989 tccgctgctccgtctcgccatgggcgaagtggcaccggtcaccaaaagtacaggcaccct 930

                       
Query: 412 tgaggaagttct 423
           | | ||||||||
Sbjct: 929 tcaagaagttct 918

>ref|XM_846161.1| PREDICTED: Canis familiaris similar to CTD small phosphatase-like
           protein (CTDSP-like) (Small C-terminal domain
           phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear
           LIM interactor-interacting factor 1) (NLI-interacting
           factor 1) (NIF-like protein) (RBSP3) (YA22 protein) (...
           (LOC608986), mRNA
          Length = 1315

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 280 tagtcacagtagcagcacaagaaggagctgaggat 314
           ||||||| | ||||||| |||||||||||||||||
Sbjct: 314 tagtcacggaagcagcagaagaaggagctgaggat 280

>ref|NM_121135.1| Arabidopsis thaliana nucleic acid binding / transcription factor/
           zinc ion binding AT5G10970 mRNA, complete cds
          Length = 819

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 279 atagtcacagtagcagcacaagaag 303
           |||| ||||||||||||||||||||
Sbjct: 112 atagacacagtagcagcacaagaag 136

>ref|XM_867393.1| PREDICTED: Bos taurus similar to CTD small phosphatase-like protein
           (CTDSP-like) (Small C-terminal domain phosphatase 3)
           (Small CTD phosphatase 3) (SCP3) (Nuclear LIM
           interactor-interacting factor 1) (NLI-interacting factor
           1) (NIF-like protein) (RBSP3) (YA22 protein) (...,
           transcript variant 2 (LOC538425), mRNA
          Length = 1114

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 290 agcagcacaagaaggagctgaggat 314
           ||||||| |||||||||||||||||
Sbjct: 164 agcagcagaagaaggagctgaggat 140

>ref|XM_618630.2| PREDICTED: Bos taurus similar to CTD small phosphatase-like protein
           (CTDSP-like) (Small C-terminal domain phosphatase 3)
           (Small CTD phosphatase 3) (SCP3) (Nuclear LIM
           interactor-interacting factor 1) (NLI-interacting factor
           1) (NIF-like protein) (RBSP3) (YA22 protein) (...,
           transcript variant 1 (LOC538425), mRNA
          Length = 1081

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 290 agcagcacaagaaggagctgaggat 314
           ||||||| |||||||||||||||||
Sbjct: 164 agcagcagaagaaggagctgaggat 140

>ref|XM_880104.1| PREDICTED: Bos taurus similar to CTD small phosphatase-like protein
           (CTDSP-like) (Small C-terminal domain phosphatase 3)
           (Small CTD phosphatase 3) (SCP3) (Nuclear LIM
           interactor-interacting factor 1) (NLI-interacting factor
           1) (NIF-like protein) (RBSP3) (YA22 protein) (...,
           transcript variant 4 (LOC538425), mRNA
          Length = 1147

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 290 agcagcacaagaaggagctgaggat 314
           ||||||| |||||||||||||||||
Sbjct: 164 agcagcagaagaaggagctgaggat 140

>gb|BC040811.1| Mus musculus RNA binding motif protein 28, mRNA (cDNA clone MGC:49120
            IMAGE:4015830), complete cds
          Length = 2563

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1792 gaaggagctgaggatccaacgcagc 1816

>gb|BC023293.1| Mus musculus RNA binding motif protein 28, mRNA (cDNA clone
           IMAGE:3984003), partial cds
          Length = 1451

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 300 gaaggagctgaggatccaccgcagc 324
           |||||||||||||||||| ||||||
Sbjct: 596 gaaggagctgaggatccaacgcagc 620

>gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-65N7, complete
             sequence
          Length = 190328

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 300   gaaggagctgaggatccaccgcagc 324
             |||||||||||||||||| ||||||
Sbjct: 37518 gaaggagctgaggatccaacgcagc 37494

>gb|DQ465034.1| Mustela putorius furo smooth muscle SCP3-like protein mRNA,
           complete cds
          Length = 1114

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 290 agcagcacaagaaggagctgaggat 314
           ||||||| |||||||||||||||||
Sbjct: 184 agcagcagaagaaggagctgaggat 160

>gb|BC024602.1| Mus musculus, clone IMAGE:4017616, mRNA
          Length = 2496

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1728 gaaggagctgaggatccaacgcagc 1752

>emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project)
          Length = 96379

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 279   atagtcacagtagcagcacaagaag 303
             |||| ||||||||||||||||||||
Sbjct: 20519 atagacacagtagcagcacaagaag 20543

>emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project)
          Length = 98473

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 279   atagtcacagtagcagcacaagaag 303
             |||| ||||||||||||||||||||
Sbjct: 77007 atagacacagtagcagcacaagaag 77031

>ref|NM_026650.1| Mus musculus RNA binding motif protein 28 (Rbm28), transcript variant
            1, mRNA
          Length = 1968

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1153 gaaggagctgaggatccaacgcagc 1177

>ref|NM_133925.1| Mus musculus RNA binding motif protein 28 (Rbm28), transcript variant
            2, mRNA
          Length = 2117

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1221 gaaggagctgaggatccaacgcagc 1245

>dbj|AK156773.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830048N20 product:hypothetical
            RNA-binding region RNP-1  (RNA recognition motif)
            containing protein, full insert sequence
          Length = 3517

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1784 gaaggagctgaggatccaacgcagc 1808

>dbj|AK161670.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730478I16 product:hypothetical
            RNA-binding region RNP-1  (RNA recognition motif)
            containing protein, full insert sequence
          Length = 2708

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1814 gaaggagctgaggatccaacgcagc 1838

>dbj|AK167050.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0028O10 product:hypothetical
            RNA-binding region RNP-1  (RNA recognition motif)
            containing protein, full insert sequence
          Length = 2603

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1849 gaaggagctgaggatccaacgcagc 1873

>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 226538

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 300   gaaggagctgaggatccaccgcagc 324
             |||||||||||||||||| ||||||
Sbjct: 78487 gaaggagctgaggatccaacgcagc 78511

>gb|BC027123.1| Mus musculus RNA binding motif protein 28, mRNA (cDNA clone MGC:38664
            IMAGE:5356457), complete cds
          Length = 1968

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1153 gaaggagctgaggatccaacgcagc 1177

>gb|BC018373.1| Mus musculus RNA binding motif protein 28, mRNA (cDNA clone MGC:12075
            IMAGE:3708613), complete cds
          Length = 2117

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  gaaggagctgaggatccaccgcagc 324
            |||||||||||||||||| ||||||
Sbjct: 1221 gaaggagctgaggatccaacgcagc 1245

>gb|AC147437.2| Gallus gallus BAC clone CH261-80L21 from chromosome unknown, complete
              sequence
          Length = 221338

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     gataaaatgccagaaaactga 31
              |||||||||||||||||||||
Sbjct: 192936 gataaaatgccagaaaactga 192916

>emb|AL929571.10| Mouse DNA sequence from clone RP23-313G3 on chromosome 2, complete
             sequence
          Length = 88123

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   aaaagctgaatctaaatcaca 218
             |||||||||||||||||||||
Sbjct: 52419 aaaagctgaatctaaatcaca 52439

>gb|AC121151.11| Mus musculus chromosome 17, clone RP24-342C2, complete sequence
          Length = 205467

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    gataaaatgccagaaaactg 30
             ||||||||||||||||||||
Sbjct: 64319 gataaaatgccagaaaactg 64300

>gb|AC125121.4| Mus musculus BAC clone RP24-267O4 from chromosome 6, complete sequence
          Length = 162573

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 265   caagggagaacagaatagtcacag 288
             |||||||||||| |||||||||||
Sbjct: 44244 caagggagaacaaaatagtcacag 44221

>gb|AC120120.2| Homo sapiens chromosome 5 clone RP11-458K15, complete sequence
          Length = 126549

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 211   aaatcacaatccatggaaccaaatacaa 238
             |||| ||||| |||||||||||||||||
Sbjct: 55505 aaatgacaattcatggaaccaaatacaa 55478

>gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 109988

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  acaatccatggaaccaaata 235
            ||||||||||||||||||||
Sbjct: 5755 acaatccatggaaccaaata 5736

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 353     ccgctgttcggtctcgccatgggc 376
               |||||| |||||||||||||||||
Sbjct: 4622969 ccgctgctcggtctcgccatgggc 4622992

>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a
              novel gene and the 3' end of a gene that is a possible
              ortholog of human dynein axonemal heavy polypeptide 9
              (DNAH9), complete sequence
          Length = 190066

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     ccagaaaactgacttgagaa 39
              ||||||||||||||||||||
Sbjct: 117046 ccagaaaactgacttgagaa 117027

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 353     ccgctgttcggtctcgccatgggc 376
               |||||| |||||||||||||||||
Sbjct: 2067662 ccgctgctcggtctcgccatgggc 2067639

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     agcgtccggaagcatattcc 191
               ||||||||||||||||||||
Sbjct: 5435659 agcgtccggaagcatattcc 5435640

>emb|BX649618.9| Mouse DNA sequence from clone RP23-159M13 on chromosome X, complete
             sequence
          Length = 111079

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ataaaatgccagaaaactga 31
             ||||||||||||||||||||
Sbjct: 55356 ataaaatgccagaaaactga 55337

>gb|M76981.1|SOYGLYMAX Glycine max vspA gene, complete cds
          Length = 3346

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   agaaaactgacttgagaatt 41
            ||||||||||||||||||||
Sbjct: 2468 agaaaactgacttgagaatt 2449


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,083,838
Number of Sequences: 3902068
Number of extensions: 3083838
Number of successful extensions: 50680
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50593
Number of HSP's gapped (non-prelim): 87
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)