ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GTR5_RABIT (P46408) Solute carrier family 2, facilitated glucose... 28 9.1
2PHLB_MYCTU (P95246) Phospholipase C 2 precursor (EC 3.1.4.3) 28 9.1

>GTR5_RABIT (P46408) Solute carrier family 2, facilitated glucose transporter|
           member 5 (Glucose transporter type 5, small intestine)
           (Fructose transporter)
          Length = 486

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 127 GLVRIR*GCCCYXMCWYIXHQVWDFWYKTCG*CCIYYYHLVF 2
           GLV +R  C    + W +   V   W +  G   IYYY  ++
Sbjct: 258 GLVSVRALCAMRGLAWQLISVVPLMWQQLSGVNAIYYYDQIY 299



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>PHLB_MYCTU (P95246) Phospholipase C 2 precursor (EC 3.1.4.3)|
          Length = 521

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  IPKIPHLMXNIPTHTVAATALPYSYQSPLSL 139
           +PK+P  + N    TV  TA+PY    P S+
Sbjct: 475 LPKLPQCVPNAVLGTVTKTAIPYRVPFPQSM 505


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,708,635
Number of Sequences: 219361
Number of extensions: 251521
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 80,573,946
effective HSP length: 24
effective length of database: 75,309,282
effective search space used: 1807422768
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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