ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VP39_NPVOP (P17500) Major capsid protein 32 0.87
2ZN462_HUMAN (Q96JM2) Zinc finger protein 462 28 9.6

>VP39_NPVOP (P17500) Major capsid protein|
          Length = 351

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 152 EDMHTRTCSTCTINRTGLWALDDHCKLL*VAIDDQHMPIGNPSIIKPNDQEL 307
           ED+  R C+TC IN TGL A   + +L        + P+ +  IIK     L
Sbjct: 222 EDLRLRNCNTCVINNTGLVATVTNTEL--------YNPVRSSDIIKTRPNRL 265



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>ZN462_HUMAN (Q96JM2) Zinc finger protein 462|
          Length = 1412

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 122 EPNPPRLLIMEDMHTRTCSTCTINRTGLWALDDH 223
           +P+PP L +  +  T  C  C      +W + +H
Sbjct: 199 DPSPPSLTMPAEAKTYRCRDCVFEAVSIWDITNH 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,930,329
Number of Sequences: 219361
Number of extensions: 1299629
Number of successful extensions: 3096
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3096
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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