Clone Name | rbart08b10 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_194553.1| Oryza sativa (japonica cultivar-group) putative peroxidase (OSJNBa0015O22.19), mRNA Length = 1011 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Minus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 944 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 885 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 884 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 825 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 824 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 765 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 764 ggcgtcgtcgggtccaggtcgtt 742
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Plus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 635077 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635136 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 635137 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 635196 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 635197 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 635256 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 635257 ggcgtcgtcgggtccaggtcgtt 635279 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaag 291 |||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 461759 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461803
>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete sequence Length = 189349 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Plus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 102685 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 102744 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 102745 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 102804 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 102805 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 102864 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 102865 ggcgtcgtcgggtccaggtcgtt 102887
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Plus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 635077 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635136 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 635137 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 635196 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 635197 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 635256 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 635257 ggcgtcgtcgggtccaggtcgtt 635279 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaag 291 |||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 461759 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461803
>dbj|AK104730.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C06, full insert sequence Length = 1447 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Minus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 1003 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 944 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 943 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 884 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 883 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 824 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 823 ggcgtcgtcgggtccaggtcgtt 801
>dbj|AK104633.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C08, full insert sequence Length = 1382 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Minus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 938 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 879 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 878 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 819 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 818 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 759 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 758 ggcgtcgtcgggtccaggtcgtt 736
>dbj|AK061462.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B11, full insert sequence Length = 1447 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Minus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 1003 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 944 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 943 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 884 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 883 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 824 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 823 ggcgtcgtcgggtccaggtcgtt 801
>tpe|BN000654.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx125 gene for class III peroxidase 125 precursor, exons 1-3 Length = 2806 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Minus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 2739 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 2680 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 2679 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 2620 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 2619 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 2560 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 2559 ggcgtcgtcgggtccaggtcgtt 2537
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 125 bits (63), Expect = 1e-25 Identities = 168/203 (82%) Strand = Plus / Plus Query: 253 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 312 ||||| |||||||| || | ||||||||| | |||||||||| |||||||| ||||| Sbjct: 635074 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635133 Query: 313 ctgtcgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagcccctggtca 372 | ||||||||| |||||||||||||| | ||| || | ||||||||| ||||||| Sbjct: 635134 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 635193 Query: 373 gactgctggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 432 ||||| ||||||||||||| ||||||| ||| ||| |||||| ||||||||| |||| Sbjct: 635194 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 635253 Query: 433 ggcgtcgtcgggtcgaggtcgtt 455 |||||||||||||| |||||||| Sbjct: 635254 ggcgtcgtcgggtccaggtcgtt 635276 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaag 291 |||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 461756 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461800
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 360 gagcccctggtcagactgctggaagccgcggttcacctcgaggttcgtgaagtagttctt 419 |||| ||||||| ||||| ||||||||||||||||||||| ||| | |||||||||||| Sbjct: 7094782 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 7094841 Query: 420 gtcgaagttgtcaggcgtcgtcgggtcgaggtcgttcag 458 ||||||| ||| ||||| |||||||| ||||||||||| Sbjct: 7094842 gtcgaaggcgtccggcgtggtcgggtccaggtcgttcag 7094880 Score = 44.1 bits (22), Expect = 0.43 Identities = 70/86 (81%) Strand = Plus / Plus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 306 ||||||||||| |||| ||| || | |||||||| |||||||||| | ||||||| Sbjct: 7094675 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 7094734 Query: 307 gcgaacctgtcgacgatcggcgccgt 332 ||||| |||| |||||||| |||||| Sbjct: 7094735 gcgaagctgttgacgatcgccgccgt 7094760
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 360 gagcccctggtcagactgctggaagccgcggttcacctcgaggttcgtgaagtagttctt 419 |||| ||||||| ||||| ||||||||||||||||||||| ||| | |||||||||||| Sbjct: 7092677 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 7092736 Query: 420 gtcgaagttgtcaggcgtcgtcgggtcgaggtcgttcag 458 ||||||| ||| ||||| |||||||| ||||||||||| Sbjct: 7092737 gtcgaaggcgtccggcgtggtcgggtccaggtcgttcag 7092775 Score = 44.1 bits (22), Expect = 0.43 Identities = 70/86 (81%) Strand = Plus / Plus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 306 ||||||||||| |||| ||| || | |||||||| |||||||||| | ||||||| Sbjct: 7092570 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 7092629 Query: 307 gcgaacctgtcgacgatcggcgccgt 332 ||||| |||| |||||||| |||||| Sbjct: 7092630 gcgaagctgttgacgatcgccgccgt 7092655
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence Length = 136098 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 360 gagcccctggtcagactgctggaagccgcggttcacctcgaggttcgtgaagtagttctt 419 |||| ||||||| ||||| ||||||||||||||||||||| ||| | |||||||||||| Sbjct: 99556 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 99497 Query: 420 gtcgaagttgtcaggcgtcgtcgggtcgaggtcgttcag 458 ||||||| ||| ||||| |||||||| ||||||||||| Sbjct: 99496 gtcgaaggcgtccggcgtggtcgggtccaggtcgttcag 99458 Score = 44.1 bits (22), Expect = 0.43 Identities = 70/86 (81%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 306 ||||||||||| |||| ||| || | |||||||| |||||||||| | ||||||| Sbjct: 99663 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 99604 Query: 307 gcgaacctgtcgacgatcggcgccgt 332 ||||| |||| |||||||| |||||| Sbjct: 99603 gcgaagctgttgacgatcgccgccgt 99578
>dbj|AK104936.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G10, full insert sequence Length = 1202 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 360 gagcccctggtcagactgctggaagccgcggttcacctcgaggttcgtgaagtagttctt 419 |||| ||||||| ||||| ||||||||||||||||||||| ||| | |||||||||||| Sbjct: 942 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 883 Query: 420 gtcgaagttgtcaggcgtcgtcgggtcgaggtcgttcag 458 ||||||| ||| ||||| |||||||| ||||||||||| Sbjct: 882 gtcgaaggcgtccggcgtggtcgggtccaggtcgttcag 844 Score = 44.1 bits (22), Expect = 0.43 Identities = 70/86 (81%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 306 ||||||||||| |||| ||| || | |||||||| |||||||||| | ||||||| Sbjct: 1049 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 990 Query: 307 gcgaacctgtcgacgatcggcgccgt 332 ||||| |||| |||||||| |||||| Sbjct: 989 gcgaagctgttgacgatcgccgccgt 964
>dbj|AK068353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142D12, full insert sequence Length = 1201 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 360 gagcccctggtcagactgctggaagccgcggttcacctcgaggttcgtgaagtagttctt 419 |||| ||||||| ||||| ||||||||||||||||||||| ||| | |||||||||||| Sbjct: 943 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 884 Query: 420 gtcgaagttgtcaggcgtcgtcgggtcgaggtcgttcag 458 ||||||| ||| ||||| |||||||| ||||||||||| Sbjct: 883 gtcgaaggcgtccggcgtggtcgggtccaggtcgttcag 845 Score = 44.1 bits (22), Expect = 0.43 Identities = 70/86 (81%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 306 ||||||||||| |||| ||| || | |||||||| |||||||||| | ||||||| Sbjct: 1050 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 991 Query: 307 gcgaacctgtcgacgatcggcgccgt 332 ||||| |||| |||||||| |||||| Sbjct: 990 gcgaagctgttgacgatcgccgccgt 965
>tpe|BN000568.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx39 gene for class III peroxidase 39 precursor, exons 1-4 Length = 2005 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 360 gagcccctggtcagactgctggaagccgcggttcacctcgaggttcgtgaagtagttctt 419 |||| ||||||| ||||| ||||||||||||||||||||| ||| | |||||||||||| Sbjct: 1834 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 1775 Query: 420 gtcgaagttgtcaggcgtcgtcgggtcgaggtcgttcag 458 ||||||| ||| ||||| |||||||| ||||||||||| Sbjct: 1774 gtcgaaggcgtccggcgtggtcgggtccaggtcgttcag 1736 Score = 44.1 bits (22), Expect = 0.43 Identities = 70/86 (81%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 306 ||||||||||| |||| ||| || | |||||||| |||||||||| | ||||||| Sbjct: 1941 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 1882 Query: 307 gcgaacctgtcgacgatcggcgccgt 332 ||||| |||| |||||||| |||||| Sbjct: 1881 gcgaagctgttgacgatcgccgccgt 1856
>gb|AY110228.1| Zea mays CL32412_1 mRNA sequence Length = 1199 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 232 tccgtgaccggcctaatgttccccatcttgatcatagaattcgcgaagctactgaagaag 291 ||||||| |||| | ||||||||||| |||||||| || | ||||||||| ||||||| Sbjct: 260 tccgtgagcggcttgatgttccccatgttgatcatggactgcgcgaagctcgcgaagaag 319 Query: 292 gcgtcctggctgcccgcgaacctgtcgacgatcggcgccgt 332 |||| |||||| |||||||| ||||||||| |||||||| Sbjct: 320 tcgtcttggctggccgcgaactggtcgacgatgggcgccgt 360 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 422 cgaagttgtcaggcgtcgtcgggtcgaggtcgttcaggg 460 ||||| |||| || ||||||||||| ||||||||||||| Sbjct: 450 cgaaggtgtccggggtcgtcgggtccaggtcgttcaggg 488
>gb|AY106507.1| Zea mays PCO076057 mRNA sequence Length = 902 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctg 303 ||||| ||||| |||||||| || | ||||||||| |||||||||||| |||||||| Sbjct: 602 atgttgcccatgttgatcatggactgcgcgaagctgctgaagaaggcggcctggctg 546 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Minus Query: 380 ggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtcaggcgtcg 439 ||||||| ||||||||||| ||||| ||| |||||| |||||||| || ||||||| Sbjct: 470 ggaagccccggttcacctccaggttggtgtagtagtggttgtcgaacaggttcggcgtcg 411 Query: 440 tcgggtcgaggtcgttcaggg 460 | ||||| |||||||| |||| Sbjct: 410 tggggtccaggtcgttgaggg 390
>ref|NM_120756.2| Arabidopsis thaliana peroxidase AT5G06730 mRNA, complete cds Length = 1392 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 244 ctaatgttccccatcttgatcataga 269 |||||||||||||||||||||||||| Sbjct: 1013 ctaatgttccccatcttgatcataga 988
>gb|AY519360.1| Arabidopsis thaliana peroxidase ATP29a gene, complete cds Length = 1414 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 244 ctaatgttccccatcttgatcataga 269 |||||||||||||||||||||||||| Sbjct: 1287 ctaatgttccccatcttgatcataga 1262
>emb|Y11794.1|ATP29A A.thaliana mRNA for peroxidase ATP29a, partial Length = 753 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 244 ctaatgttccccatcttgatcataga 269 |||||||||||||||||||||||||| Sbjct: 317 ctaatgttccccatcttgatcataga 292
>gb|BT008584.1| Arabidopsis thaliana clone U51349 putative peroxidase (At5g06730) mRNA, complete cds Length = 1108 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 244 ctaatgttccccatcttgatcataga 269 |||||||||||||||||||||||||| Sbjct: 950 ctaatgttccccatcttgatcataga 925
>emb|BX831603.1|CNS0A10N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH18ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1372 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 244 ctaatgttccccatcttgatcataga 269 |||||||||||||||||||||||||| Sbjct: 996 ctaatgttccccatcttgatcataga 971
>gb|AY088509.1| Arabidopsis thaliana clone 7360 mRNA, complete sequence Length = 1351 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 244 ctaatgttccccatcttgatcataga 269 |||||||||||||||||||||||||| Sbjct: 1007 ctaatgttccccatcttgatcataga 982
>dbj|AP002032.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15 Length = 71277 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 244 ctaatgttccccatcttgatcataga 269 |||||||||||||||||||||||||| Sbjct: 30587 ctaatgttccccatcttgatcataga 30612
>dbj|AK118827.1| Arabidopsis thaliana At5g06730 mRNA for putative peroxidase, complete cds, clone: RAFL21-16-B10 Length = 1296 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 244 ctaatgttccccatcttgatcataga 269 |||||||||||||||||||||||||| Sbjct: 1013 ctaatgttccccatcttgatcataga 988
>ref|NM_194528.1| Oryza sativa (japonica cultivar-group) putative copia-type polyprotein (OSJNBa0065H03.10), mRNA Length = 4053 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaag 291 |||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 3986 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 3942
>gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0065H03, complete sequence Length = 141017 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaag 291 |||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 65933 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 65977
>tpe|BN000653.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx124 gene for class III peroxidase 124 precursor, exons 1-2 Length = 6789 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaattcgcgaagctactgaagaag 291 |||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 6722 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 6678
>dbj|AP006408.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT23O19, TM0297b, complete sequence Length = 43490 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 245 taatgttccccatcttgatcatagaatt 272 |||| ||||||||||||||||||||||| Sbjct: 22628 taatattccccatcttgatcatagaatt 22601
>dbj|AK042057.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630054P20 product:unclassifiable, full insert sequence Length = 1823 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 52 atgaaatgtttacatattggtt 73 |||||||||||||||||||||| Sbjct: 1394 atgaaatgtttacatattggtt 1373
>emb|BX470219.6| Zebrafish DNA sequence from clone DKEYP-104C8 in linkage group 9, complete sequence Length = 177086 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 ttccacatcagagaacaagcat 49 |||||||||||||||||||||| Sbjct: 39159 ttccacatcagagaacaagcat 39138
>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195726 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 52 atgaaatgtttacatattggtt 73 |||||||||||||||||||||| Sbjct: 122482 atgaaatgtttacatattggtt 122503
>emb|AL935140.6| Zebrafish DNA sequence from clone DKEYP-122E7 in linkage group 9, complete sequence Length = 83763 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 41 aacaagcatgcatgaaatgtttacat 66 ||||| |||||||||||||||||||| Sbjct: 76651 aacaaacatgcatgaaatgtttacat 76676
>gb|AC145968.3| Pan troglodytes BAC clone RP43-12H15 from 7, complete sequence Length = 192898 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tgtatatgtatatccaaacat 168 ||||||||||||||||||||| Sbjct: 140214 tgtatatgtatatccaaacat 140234
>gb|AC092021.4| Homo sapiens BAC clone RP11-420H12 from 7, complete sequence Length = 37083 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tgtatatgtatatccaaacat 168 ||||||||||||||||||||| Sbjct: 23371 tgtatatgtatatccaaacat 23351
>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence Length = 117113 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 atccaagaccatgccacactt 146 ||||||||||||||||||||| Sbjct: 58645 atccaagaccatgccacactt 58625
>emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O18 on chromosome 1p32.3-34.1 Contains GSSs, complete sequence Length = 101453 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tgtatatgtatatccaaacat 168 ||||||||||||||||||||| Sbjct: 4204 tgtatatgtatatccaaacat 4224
>gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome 13, complete sequence Length = 157586 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 cacacttgtgtatatgtatat 160 ||||||||||||||||||||| Sbjct: 112981 cacacttgtgtatatgtatat 113001
>emb|AL928671.6| Zebrafish DNA sequence from clone CH211-39M14, complete sequence Length = 173481 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 aaatgtttacatattggttga 75 ||||||||||||||||||||| Sbjct: 116711 aaatgtttacatattggttga 116731
>gb|AC109298.19| Mus musculus chromosome 3, clone RP24-271A4, complete sequence Length = 191546 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 tgacttgagcccctggtcag 373 |||||||||||||||||||| Sbjct: 148079 tgacttgagcccctggtcag 148060
>gb|AY857760.1| Triticum monococcum peroxidase 6 (POX6) mRNA, complete cds Length = 1308 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcat 266 |||||||||||||||||||| Sbjct: 971 atgttccccatcttgatcat 952
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 cctgtcgacgatcggcgccg 331 |||||||||||||||||||| Sbjct: 2838062 cctgtcgacgatcggcgccg 2838043
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cggcgccgtcgtccccgccg 343 |||||||||||||||||||| Sbjct: 1647365 cggcgccgtcgtccccgccg 1647384
>gb|AC008308.9| Drosophila melanogaster clone BACR10M16, complete sequence Length = 196423 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 tgtgtatatgtatatccaaa 165 |||||||||||||||||||| Sbjct: 142117 tgtgtatatgtatatccaaa 142136
>gb|AY521529.1| Brassica napus acid isoperoxidase (podA) mRNA, partial cds Length = 762 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 235 gtgaccggcctaatgttccccatcttgatcat 266 |||| ||| |||||||||||||| |||||||| Sbjct: 749 gtgaacggactaatgttccccattttgatcat 718
>gb|AY227666.1| Lycopersicon esculentum myo inositol monophosphatase isoform 1 (IMP-1) gene, complete cds Length = 5874 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aatgtttacatattggttga 75 |||||||||||||||||||| Sbjct: 2433 aatgtttacatattggttga 2452
>emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1-55f11, COMPLETE SEQUENCE Length = 102868 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaa 270 ||||||||||||||||||| |||| Sbjct: 91904 atgttccccatcttgatcaaagaa 91881 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaa 270 ||||||||||||||||||| |||| Sbjct: 65786 atgttccccatcttgatcaaagaa 65763
>gb|AC099681.4| Homo sapiens BAC clone RP11-310H4 from 7, complete sequence Length = 97787 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 tgtgtatatgtatatccaaacatg 169 |||||||||||||||| ||||||| Sbjct: 48384 tgtgtatatgtatatcaaaacatg 48361
>gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, complete sequence Length = 134552 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 aatacaaatttcagtctatt 29 |||||||||||||||||||| Sbjct: 51635 aatacaaatttcagtctatt 51654
>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence Length = 83007 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 atgttccccatcttgatcatagaa 270 ||||||||||||||||||| |||| Sbjct: 73196 atgttccccatcttgatcaaagaa 73219 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 atgttccccatcttgatcatagaa 270 ||||||||||||||||||| |||| Sbjct: 47078 atgttccccatcttgatcaaagaa 47101
>emb|AL607130.8| Human DNA sequence from clone RP11-80C17 on chromosome 10, complete sequence Length = 10455 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 ttgtgtatatgtatatccaaacat 168 ||||||||||||||||| |||||| Sbjct: 9047 ttgtgtatatgtatatcaaaacat 9024
>emb|AL158840.14| Human DNA sequence from clone RP11-181B18 on chromosome 1 Contains part of gene KIAA1365 and a novel gene, complete sequence Length = 87665 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 gcatgcatgaaatgtttacatatt 69 ||||||||||||||||| |||||| Sbjct: 40661 gcatgcatgaaatgtttccatatt 40684
>emb|AL158837.14| Human DNA sequence from clone RP11-102C16 on chromosome 1 Contains the gene for a novel protein (FLJ14904, FLJ29032, DKFZp434L0217), a novel gene, the GPA33 gene for glycoprotein A33 (transmembrane), the gene for novel protein (FLJ37495) and three CpG islands, complete sequence Length = 148849 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 atgcatgaaatgtttacata 67 |||||||||||||||||||| Sbjct: 45845 atgcatgaaatgtttacata 45864
>emb|AL136359.13| Human DNA sequence from clone RP11-24H2 on chromosome 13 Contains a pseudogene similar to part of protocadherin 8 (PCDH8), a novel gene and a CpG island, complete sequence Length = 176056 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 aatgttccccatcttgatca 265 |||||||||||||||||||| Sbjct: 160417 aatgttccccatcttgatca 160398
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 cctgtcgacgatcggcgccg 331 |||||||||||||||||||| Sbjct: 69538 cctgtcgacgatcggcgccg 69519
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 cctgtcgacgatcggcgccg 331 |||||||||||||||||||| Sbjct: 298371 cctgtcgacgatcggcgccg 298352
>emb|BX072578.10| Zebrafish DNA sequence from clone CH211-286A10 in linkage group 5, complete sequence Length = 183498 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 gcatgcatgaaatgtttaca 65 |||||||||||||||||||| Sbjct: 162877 gcatgcatgaaatgtttaca 162858
>gb|AC073173.7| Homo sapiens chromosome 10 clone RP11-183D3, complete sequence Length = 114611 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 ttgtgtatatgtatatccaaacat 168 ||||||||||||||||| |||||| Sbjct: 592 ttgtgtatatgtatatcaaaacat 569
>gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, complete sequence Length = 193872 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 acacttgtgtatatgtatat 160 |||||||||||||||||||| Sbjct: 111695 acacttgtgtatatgtatat 111714
>gb|AF479623.1| Ficus carica peroxidase mRNA, complete cds Length = 1267 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 cctaatgttccccatcttgatcat 266 |||||| ||||||||||||||||| Sbjct: 947 cctaatattccccatcttgatcat 924
>gb|U36763.1|MBU36763 Mycobacterium bovis fatty acid synthase gene, complete cds Length = 8391 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 cctgtcgacgatcggcgccg 331 |||||||||||||||||||| Sbjct: 6399 cctgtcgacgatcggcgccg 6418
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ctgtcgacgatcggcgccgt 332 |||||||||||||||||||| Sbjct: 2245582 ctgtcgacgatcggcgccgt 2245563
>gb|AC018683.4|AC018683 Homo sapiens BAC clone RP11-423P14 from 4, complete sequence Length = 201907 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 tgtgtatatgtatatccaaacatg 169 ||||||||||||||| |||||||| Sbjct: 136591 tgtgtatatgtatatacaaacatg 136568
>gb|AC009344.8|AC009344 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone BACR20N14, complete sequence Length = 173634 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tgtgtatatgtatatccaaa 165 |||||||||||||||||||| Sbjct: 147543 tgtgtatatgtatatccaaa 147524
>dbj|AB178953.2| Nicotiana tabacum NtPOX1 mRNA for peroxidase, complete cds Length = 1339 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gttccccatcttgatcatag 268 |||||||||||||||||||| Sbjct: 1054 gttccccatcttgatcatag 1035
>gb|AY917594.1| Uncultured bacterium clone 1921a-06 16S ribosomal RNA gene, partial sequence Length = 783 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 gggcatctctgggagaggaa 500 |||||||||||||||||||| Sbjct: 175 gggcatctctgggagaggaa 194
>gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71 of 118 of the complete sequence Length = 235707 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tgtgtatatgtatatccaaa 165 |||||||||||||||||||| Sbjct: 215832 tgtgtatatgtatatccaaa 215813
>gb|AC144762.3| Mus musculus BAC clone RP24-95D6 from 3, complete sequence Length = 198005 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tgtgtatatgtatatccaaa 165 |||||||||||||||||||| Sbjct: 135235 tgtgtatatgtatatccaaa 135216
>gb|U16727.1|MTU16727 Medicago truncatula peroxidase precursor (rip1) gene, complete cds Length = 3060 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 atgttccccatcttgatcatagaa 270 ||||||||||||||||||| |||| Sbjct: 2608 atgttccccatcttgatcaaagaa 2585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,072,436 Number of Sequences: 3902068 Number of extensions: 4072436 Number of successful extensions: 90360 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89948 Number of HSP's gapped (non-prelim): 412 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)