>RFBE_SHIFL (P37781) Putative O-antigen transporter|
          Length = 418

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
 Frame = +1

Query: 67  IFLVRNNNVKITHLLSSTASVFECTRCFGSFKLNCQN---ILYVGREGVRPLQMHVCACM 237
           I + R+N+ + T ++S++ S      CFG+F L   +   + Y+   GV    + +   +
Sbjct: 65  IAIHRDNHHERTKVISTSTSFLVLFSCFGAFLLLIFSDGIVNYLKISGVEHSDIQLAFKL 124

Query: 238 HA-CMPSMVYSSATTILIAGDSFLPVTSVAKLTGSPYLGPLP 360
            A C+P  + +   + ++ GD    + ++ K   S  +  +P
Sbjct: 125 LAICIPLFILNQLWSAILEGDEKFGIVNIQKSISSSCIAGIP 166

>MMRN1_HUMAN (Q13201) Multimerin-1 precursor (Endothelial cell multimerin 1)|
            (EMILIN-4) (Elastin microfibril interface located protein
            4) (Elastin microfibril interfacer 4)
          Length = 1228

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 332  VNFATLVTGKNESPAIKMVVADE*TMDGMHACMHAHTCICNGRT 201
            VN  T++ G+ +     ++  +E +    H C +  TCI NGRT
Sbjct: 1019 VNLTTVLIGRTQRNTDNIIYPEEYSSCSRHPCQNGGTCI-NGRT 1061

>HBB_LEPPA (P02138) Hemoglobin beta subunit (Hemoglobin beta chain)|
           (Beta-globin)
          Length = 147

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 76  VRNNNVKITHLLSSTASVFECTRCFGSFKLNCQNILYVGRE 198
           +++NN    H     A++ ECTR FG+ K +  N+ ++  E
Sbjct: 54  IKHNNKVSAHGRKVLAAIIECTRHFGNIKGHLANLSHLHSE 94

>HSP1_COTJA (P14402) Sperm histone (Protamine)|
          Length = 56

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 360 RQRPQVRRARQLRHARHGQERISCDQDGRRRR 265
           R+R + RR R  R  R+G+ R S    GRRRR
Sbjct: 13  RRRRRSRRRRSSRRRRYGRSRRSYRSVGRRRR 44

>THIX_YEAST (Q08485) Putative thiamine transporter YOR071C|
          Length = 598

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
 Frame = +1

Query: 121 ASVFECTRCFGSFKL-----NCQNILYVGREGVRPLQMHV------CACMH-ACMPSMVY 264
           A  F C  CF   ++     NC     +   G+ P  + +      CAC+  AC+P   Y
Sbjct: 330 AGAFFCGLCFTMSQMSSTISNCGFATGMDMAGLLPKYVDIKRGALFCACISWACLPWNFY 389

Query: 265 SSATTILIAGDSF 303
           +S++T L    SF
Sbjct: 390 NSSSTFLTVMSSF 402

>LCMT2_HUMAN (O60294) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)|
           (p21WAF1/CIP1 promoter-interacting protein)
          Length = 686

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 333 RQLRHARHGQERISCDQDGRRRRVNHGWHAC 241
           RQL    HG ER    +  RRR +  GW AC
Sbjct: 236 RQLNSPLHGLERFPDVEAQRRRFLQAGWTAC 266

>HRCA_SYNEL (Q8DKU4) Heat-inducible transcription repressor hrcA|
          Length = 352

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 323 ATLVTGKNESPA-IKMVVADE*TMDGMHACMHAHTCICNGRTP 198
           A L+T  +++P+ +++ +  E T+  M  C   ++C C G +P
Sbjct: 274 APLITTDSQAPSQVQIRIGSENTLAPMQCCTLVYSCYCYGDSP 316

>ZN416_HUMAN (Q9BWM5) Zinc finger protein 416|
          Length = 594

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 109 LSSTASVFECTRCFGSFKLNCQNILY-VGREGVRPLQMHVC 228
           + +TA  +EC +C  SF L C  I + +   G RP +   C
Sbjct: 403 IHTTARPYECGQCGKSFSLKCGLIQHQLIHSGARPFECDEC 443

>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1239

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = -2

Query: 360  RQRPQVRRARQLRHARHGQERISCDQDGRRRRVNHGWHACMHACAHVHLQWPY 202
            + RP  R   Q +  R    R +C  +G    V   W    H C H H   P+
Sbjct: 1114 QSRPSCRHVAQTQSLRLPSYREAC-VEGVPAGVAATWQPRQHVCLHTHTHLPF 1165

>HRCA_MYCMO (Q6KIH9) Heat-inducible transcription repressor hrcA|
          Length = 332

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = -3

Query: 347 KYGEPVNFATLVTGKN---ESPAIKMVVADE*TMDGMHACMHAHTCICNGRTPSLPTYKM 177
           K G+PV+   L++       S  I+ ++AD   ++        HT   +GR PS+  YK 
Sbjct: 20  KSGQPVSSKQLISEYKLAVSSATIRNIMAD---LENEGFLEKTHTS--SGRIPSISGYKF 74

Query: 176 F*QFNLKLPKHLVHSKTEAVLDNK 105
           F + +      L+ SK + +   +
Sbjct: 75  FAEHSKSKTNELLESKLKEIFSKR 98

>ATX10_RAT (Q9ER24) Ataxin-10 (Spinocerebellar ataxia type 10 protein homolog)|
           (Neuronal beta-catenin-like protein)
          Length = 475

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 52  ENAQAIFLVRNNNVKITHLLSSTASVFECTRCFGSFKLNC 171
           ++ QA+ L   +  ++ HL SS   + EC RC  +  + C
Sbjct: 56  KSTQAVELACRDPSQVEHLASSLQLITECFRCLRNACIEC 95

>3BHS5_MOUSE (Q61694) 3 beta-hydroxysteroid dehydrogenase type 5 (3|
           beta-hydroxysteroid dehydrogenase type V) (3Beta-HSD V)
           (NADPH-dependent 3-beta-hydroxy-delta(5)-steroid
           dehydrogenase) (EC 1.1.1.-) (3-beta-hydroxy-5-ene
           steroid dehydrogenase) (Progeste
          Length = 372

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +1

Query: 172 QNILYVGREGVRPLQMHVCACMHACMPSMVYSSATTILIAG 294
           Q IL V  +G    Q+ + AC+ A +P+ +YSS  ++L+AG
Sbjct: 94  QTILDVNLKGT---QLLLDACVEASVPTFIYSS--SVLVAG 129

>US02_BHV1S (Q08099) Protein US2 homolog|
          Length = 220

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 175 NILYVGREGVRPLQMHVCACMHACMPSMVYSSATTILI 288
           N+L  GR G RP  M V        P   + +ATT L+
Sbjct: 104 NLLNSGRAGARPFHMWVFGAADLYAPIFAHIAATTRLV 141

>MSH6_ARATH (O04716) DNA mismatch repair protein MSH6-1 (AtMsh6-1)|
          Length = 1324

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 244 CMPSMVYSSATTILIAGDSFLP 309
           C PS  YSS   IL  G SFLP
Sbjct: 616 CQPSSAYSSEGKILGDGSSFLP 637

>POP3_SCHPO (O74184) WD-repeat protein pop3 (WD-repeat protein wat1)|
          Length = 314

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 327 LRHARHGQERISCDQDGRRRRVNHGWHACMH 235
           L H   G E +SCDQ GR R  + G ++C H
Sbjct: 131 LIHPNQG-ELLSCDQSGRVRAWDLGENSCTH 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,620,224
Number of Sequences: 219361
Number of extensions: 878971
Number of successful extensions: 2472
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2469
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)