ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 43 5e-04
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 37 0.039
3GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 36 0.051
4APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 30 3.7
5Y2559_MYCTU (Q50739) Hypothetical protein Rv2559c/MT2636 30 4.8
6CSP_PLAFA (P02893) Circumsporozoite protein precursor (CS) 29 6.3
7GLGC_CLOCE (Q9L385) Glucose-1-phosphate adenylyltransferase (EC ... 29 8.2
8YT41_CAEEL (Q11069) Hypothetical protein B0416.1 in chromosome X 29 8.2
9CSP_PLAFT (P13814) Circumsporozoite protein precursor (CS) 29 8.2
10OAR_MYXXA (P38370) Protein oar precursor 29 8.2

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
 Frame = -2

Query: 460 YNYNMSSSCGLP----GATV-----CDDPDAHVSWDGIHLTEAPYRFI 344
           YNYN    CG+     G  V     CD+PD  V WDG+H T+A  +FI
Sbjct: 310 YNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFI 357



to top

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
 Frame = -2

Query: 460 YNYNMSSSCG-----------LPGATVCDDPDAHVSWDGIHLTEAPYRFIANTWLKGPYA 314
           YN+++++ CG           + G+  C  P   V+WDG H TEA   +  +    G ++
Sbjct: 312 YNFSVTAPCGDTVTADDGTKIVVGSCAC--PSVRVNWDGAHYTEAANEYFFDQISTGAFS 369

Query: 313 HPPL 302
            PP+
Sbjct: 370 DPPV 373



to top

>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 36.2 bits (82), Expect = 0.051
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 406 DPDAHVSWDGIHLTEAPYRFIANTWLK 326
           D +  +SWDG+HL+E  Y  IAN W K
Sbjct: 109 DRNTDISWDGLHLSEIGYTKIANIWYK 135



to top

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 436 CGLPGATVCDDPDAHVSWDGIHLTEAPYRFIANTWLKGPYAH 311
           C    + +C +  +++ WDG+H T+  Y+ I    +K  Y H
Sbjct: 490 CKKSTSKICPNTSSYLFWDGVHPTQRAYKTINKVLIK-EYLH 530



to top

>Y2559_MYCTU (Q50739) Hypothetical protein Rv2559c/MT2636|
          Length = 452

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
 Frame = +3

Query: 363 SVRWMPSQLTCASGSSHTVAPGSPHDELM-------L*LYGPP 470
           +VR  P+ L    G  H +APGSP   L+       + LYGPP
Sbjct: 32  AVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPP 74



to top

>CSP_PLAFA (P02893) Circumsporozoite protein precursor (CS)|
          Length = 412

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 327 LSQVLAMKR*GASVRWMPSQLTCASGSSHTVAPGS---PHDEL 446
           + Q L   +   S  W P  +TC +G    + PGS   P DEL
Sbjct: 331 IEQYLKKIKNSISTEWSPCSVTCGNGIQVRIKPGSANKPKDEL 373



to top

>GLGC_CLOCE (Q9L385) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)|
           (ADP-glucose synthase) (ADP-glucose pyrophosphorylase)
           (ADPGlc PPase)
          Length = 426

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = +2

Query: 224 SLVMDHHVMCVNN--NESI---DHVVADDA--GEGWMRVGALEPGVGDEAVGRLGEVDAI 382
           S++M +  +C N   N SI     ++ + A  GEG       +PG+ D  +  +GE  +I
Sbjct: 328 SIIMSNSRVCKNAYINRSIISEQAIIGEKARLGEGPDVPNEYKPGIYDSGITVVGEKSSI 387

Query: 383 PADVRVG 403
           PAD  +G
Sbjct: 388 PADPVIG 394



to top

>YT41_CAEEL (Q11069) Hypothetical protein B0416.1 in chromosome X|
          Length = 1203

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 430 LPGATVCDDPDAHVSWDGIHLTEAPYRFIANTWLK--GPYA-HPPLASVVRDDMVY*FVV 260
           LP   V ++P  + S+  +  T  P      T L   GP+  + P ASV +DD V+   V
Sbjct: 496 LPRYPVDNNPHTYYSYAPVTTTPIPATSSWTTVLPDFGPFGVYNPKASVTKDDTVFSSPV 555

Query: 259 INTH 248
           + TH
Sbjct: 556 VETH 559



to top

>CSP_PLAFT (P13814) Circumsporozoite protein precursor (CS)|
          Length = 424

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 327 LSQVLAMKR*GASVRWMPSQLTCASGSSHTVAPGS---PHDEL 446
           + Q L   +   S  W P  +TC +G    + PGS   P DEL
Sbjct: 343 IEQYLKKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDEL 385



to top

>OAR_MYXXA (P38370) Protein oar precursor|
          Length = 1061

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = -2

Query: 457 NYNMSSSCGLPGATVCDDPDAHVSWDGIHLTEAPYRFIANTWLKGPYAHPPLASVVRD 284
           N N   + G  G T  D PD         +  A Y  +ANT L   Y H  + SV+ D
Sbjct: 741 NVNRFYTGGTVGGTPVD-PDIKAQSSDEIVVGAEYEVLANTRLGASYTHKDMNSVIED 797


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,392,006
Number of Sequences: 219361
Number of extensions: 1339936
Number of successful extensions: 3300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3299
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top