ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BTBD7_HUMAN (Q9P203) BTB/POZ domain-containing protein 7 30 2.4
2UXUA_HAEI8 (Q4QPI9) Mannonate dehydratase (EC 4.2.1.8) (D-mannon... 29 3.1
3UXUA_MANSM (Q65V66) Mannonate dehydratase (EC 4.2.1.8) (D-mannon... 28 6.9

>BTBD7_HUMAN (Q9P203) BTB/POZ domain-containing protein 7|
          Length = 1132

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 70  LSRVPERHTHSTRSKRRGAQVTEFQNGP 153
           LS +P+RHTH++R K    Q T+ +  P
Sbjct: 912 LSCIPQRHTHTSRKKHTLEQKTDTRENP 939



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>UXUA_HAEI8 (Q4QPI9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)|
          Length = 394

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 11  TSLPVVRDTSPESRRTHVTSFLESQKGTLIPLGQNVG 121
           T L   +D SPE  RTH+  FL      ++P+ Q VG
Sbjct: 195 TQLDRYKDISPEKFRTHLAYFLNE----IVPVAQEVG 227



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>UXUA_MANSM (Q65V66) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)|
          Length = 394

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 29  RDTSPESRRTHVTSFLESQKGTLIPLGQNVG 121
           +D SPE  RTH+  FL      +IP+ Q VG
Sbjct: 201 KDISPEKFRTHLAYFLNE----IIPVAQEVG 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,121,675
Number of Sequences: 219361
Number of extensions: 329743
Number of successful extensions: 813
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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