ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC072287.1| Xenopus laevis similar to phosphoenolpyruvate car... 40 1.9
2gb|BC044042.1| Xenopus laevis similar to phosphoenolpyruvate car... 40 1.9
3emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4,... 38 7.7
4gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete se... 38 7.7
5gb|CP000134.1| Rhizobium etli CFN 42 plasmid p42a, complete sequ... 38 7.7
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
8gb|AC068273.5| Homo sapiens BAC clone RP11-89O10 from 2, complet... 38 7.7
9dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
10dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
11emb|BX537257.4| Mouse DNA sequence from clone RP23-89C2 on chrom... 38 7.7
12dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
13gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cance... 38 7.7
14gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromoso... 38 7.7
15gb|AF538364.1| Rhizobium etli plasmid p42a putative integrase In... 38 7.7
16emb|AL928611.9| Mouse DNA sequence from clone RP23-263O5 on chro... 38 7.7

>gb|BC072287.1| Xenopus laevis similar to phosphoenolpyruvate carboxykinase 2
           (mitochondrial), mRNA (cDNA clone MGC:82439
           IMAGE:4681571), complete cds
          Length = 2368

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 17  ctgccggtcgtaagagatac 36
           ||||||||||||||||||||
Sbjct: 924 ctgccggtcgtaagagatac 943



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>gb|BC044042.1| Xenopus laevis similar to phosphoenolpyruvate carboxykinase 2
           (mitochondrial), mRNA (cDNA clone IMAGE:5572142),
           partial cds
          Length = 2311

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 17  ctgccggtcgtaagagatac 36
           ||||||||||||||||||||
Sbjct: 866 ctgccggtcgtaagagatac 885



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>emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE
          Length = 108871

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    cacactcattccactcggt 109
             |||||||||||||||||||
Sbjct: 35923 cacactcattccactcggt 35905



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>gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete sequence
          Length = 136675

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    cacactcattccactcggt 109
             |||||||||||||||||||
Sbjct: 61550 cacactcattccactcggt 61568



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>gb|CP000134.1| Rhizobium etli CFN 42 plasmid p42a, complete sequence
          Length = 194229

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 2    aggccggccacttcgctgc 20
            |||||||||||||||||||
Sbjct: 1808 aggccggccacttcgctgc 1826



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 128     aagtaactgaatttcagaa 146
               |||||||||||||||||||
Sbjct: 1147037 aagtaactgaatttcagaa 1147019



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 36       ctagtccagagtccagacg 54
                |||||||||||||||||||
Sbjct: 27623582 ctagtccagagtccagacg 27623600



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>gb|AC068273.5| Homo sapiens BAC clone RP11-89O10 from 2, complete sequence
          Length = 181016

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    acatcctttctagagtccc 83
             |||||||||||||||||||
Sbjct: 80244 acatcctttctagagtccc 80262



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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1203H11
          Length = 156561

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   aagtaactgaatttcagaa 146
             |||||||||||||||||||
Sbjct: 60274 aagtaactgaatttcagaa 60256



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>dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0778G11
          Length = 59211

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    ctagtccagagtccagacg 54
             |||||||||||||||||||
Sbjct: 27765 ctagtccagagtccagacg 27783



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>emb|BX537257.4| Mouse DNA sequence from clone RP23-89C2 on chromosome 2, complete
            sequence
          Length = 79633

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 84   agaaaggcacactcattcc 102
            |||||||||||||||||||
Sbjct: 9596 agaaaggcacactcattcc 9614



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>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091F23
          Length = 147699

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   aagtaactgaatttcagaa 146
             |||||||||||||||||||
Sbjct: 14116 aagtaactgaatttcagaa 14098



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>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195726

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 74     ctagagtcccagaaaggca 92
              |||||||||||||||||||
Sbjct: 132958 ctagagtcccagaaaggca 132976



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>gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromosome ul, complete sequence
          Length = 210984

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 127    caagtaactgaatttcaga 145
              |||||||||||||||||||
Sbjct: 121330 caagtaactgaatttcaga 121348



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>gb|AF538364.1| Rhizobium etli plasmid p42a putative integrase IntA (intA) gene,
           complete cds
          Length = 1322

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 2   aggccggccacttcgctgc 20
           |||||||||||||||||||
Sbjct: 853 aggccggccacttcgctgc 835



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>emb|AL928611.9| Mouse DNA sequence from clone RP23-263O5 on chromosome 2, complete
              sequence
          Length = 199317

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 29     agagatactagtccagagt 47
              |||||||||||||||||||
Sbjct: 127415 agagatactagtccagagt 127433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 809,227
Number of Sequences: 3902068
Number of extensions: 809227
Number of successful extensions: 49929
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49873
Number of HSP's gapped (non-prelim): 56
length of query: 159
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 137
effective length of database: 17,147,199,772
effective search space: 2349166368764
effective search space used: 2349166368764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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