Clone Name | rbart08b02 |
---|---|
Clone Library Name | barley_pub |
>gb|BC072287.1| Xenopus laevis similar to phosphoenolpyruvate carboxykinase 2 (mitochondrial), mRNA (cDNA clone MGC:82439 IMAGE:4681571), complete cds Length = 2368 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ctgccggtcgtaagagatac 36 |||||||||||||||||||| Sbjct: 924 ctgccggtcgtaagagatac 943
>gb|BC044042.1| Xenopus laevis similar to phosphoenolpyruvate carboxykinase 2 (mitochondrial), mRNA (cDNA clone IMAGE:5572142), partial cds Length = 2311 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ctgccggtcgtaagagatac 36 |||||||||||||||||||| Sbjct: 866 ctgccggtcgtaagagatac 885
>emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE Length = 108871 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 cacactcattccactcggt 109 ||||||||||||||||||| Sbjct: 35923 cacactcattccactcggt 35905
>gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete sequence Length = 136675 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cacactcattccactcggt 109 ||||||||||||||||||| Sbjct: 61550 cacactcattccactcggt 61568
>gb|CP000134.1| Rhizobium etli CFN 42 plasmid p42a, complete sequence Length = 194229 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aggccggccacttcgctgc 20 ||||||||||||||||||| Sbjct: 1808 aggccggccacttcgctgc 1826
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 128 aagtaactgaatttcagaa 146 ||||||||||||||||||| Sbjct: 1147037 aagtaactgaatttcagaa 1147019
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ctagtccagagtccagacg 54 ||||||||||||||||||| Sbjct: 27623582 ctagtccagagtccagacg 27623600
>gb|AC068273.5| Homo sapiens BAC clone RP11-89O10 from 2, complete sequence Length = 181016 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 acatcctttctagagtccc 83 ||||||||||||||||||| Sbjct: 80244 acatcctttctagagtccc 80262
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1203H11 Length = 156561 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 128 aagtaactgaatttcagaa 146 ||||||||||||||||||| Sbjct: 60274 aagtaactgaatttcagaa 60256
>dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0778G11 Length = 59211 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ctagtccagagtccagacg 54 ||||||||||||||||||| Sbjct: 27765 ctagtccagagtccagacg 27783
>emb|BX537257.4| Mouse DNA sequence from clone RP23-89C2 on chromosome 2, complete sequence Length = 79633 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 agaaaggcacactcattcc 102 ||||||||||||||||||| Sbjct: 9596 agaaaggcacactcattcc 9614
>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091F23 Length = 147699 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 128 aagtaactgaatttcagaa 146 ||||||||||||||||||| Sbjct: 14116 aagtaactgaatttcagaa 14098
>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195726 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 ctagagtcccagaaaggca 92 ||||||||||||||||||| Sbjct: 132958 ctagagtcccagaaaggca 132976
>gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromosome ul, complete sequence Length = 210984 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 caagtaactgaatttcaga 145 ||||||||||||||||||| Sbjct: 121330 caagtaactgaatttcaga 121348
>gb|AF538364.1| Rhizobium etli plasmid p42a putative integrase IntA (intA) gene, complete cds Length = 1322 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 aggccggccacttcgctgc 20 ||||||||||||||||||| Sbjct: 853 aggccggccacttcgctgc 835
>emb|AL928611.9| Mouse DNA sequence from clone RP23-263O5 on chromosome 2, complete sequence Length = 199317 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 agagatactagtccagagt 47 ||||||||||||||||||| Sbjct: 127415 agagatactagtccagagt 127433 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 809,227 Number of Sequences: 3902068 Number of extensions: 809227 Number of successful extensions: 49929 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49873 Number of HSP's gapped (non-prelim): 56 length of query: 159 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 137 effective length of database: 17,147,199,772 effective search space: 2349166368764 effective search space used: 2349166368764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)