ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATS5_BOVIN (Q9TT92) ADAMTS-5 (EC 3.4.24.-) (A disintegrin and me... 33 0.41
2ATS5_MOUSE (Q9R001) ADAMTS-5 precursor (EC 3.4.24.-) (A disinteg... 33 0.41
3ATS5_HUMAN (Q9UNA0) ADAMTS-5 precursor (EC 3.4.24.-) (A disinteg... 33 0.41

>ATS5_BOVIN (Q9TT92) ADAMTS-5 (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 5) (ADAM-TS
           5) (ADAM-TS5) (Aggrecanase-2) (ADMP-2) (ADAM-TS 11)
           (Fragment)
          Length = 207

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = -3

Query: 252 EPSVCPGRDLCDLTWCSLL-------LEKKPSATKSLLCGR 151
           E SVCPG D+C   WC+++       L KK  A +   CG+
Sbjct: 102 EYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGK 142



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>ATS5_MOUSE (Q9R001) ADAMTS-5 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 5) (ADAM-TS
           5) (ADAM-TS5) (Aggrecanase-2) (ADMP-2) (Implantin)
          Length = 930

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = -3

Query: 252 EPSVCPGRDLCDLTWCSLL-------LEKKPSATKSLLCGR 151
           E SVCPG D+C   WC+++       L KK  A +   CG+
Sbjct: 504 EYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGK 544



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>ATS5_HUMAN (Q9UNA0) ADAMTS-5 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 5) (ADAM-TS
           5) (ADAM-TS5) (Aggrecanase-2) (ADMP-2) (ADAM-TS 11)
          Length = 930

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = -3

Query: 252 EPSVCPGRDLCDLTWCSLL-------LEKKPSATKSLLCGR 151
           E SVCPG D+C   WC+++       L KK  A +   CG+
Sbjct: 504 EYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGK 544


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,612,628
Number of Sequences: 219361
Number of extensions: 1520093
Number of successful extensions: 3555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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