ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart08a11 |
|---|---|
| Clone Library Name | barley_pub |
>YFBT_ECOLI (P77625) Phosphatase yfbT (EC 3.1.3.-)| Length = 216 Score = 32.7 bits (73), Expect = 0.52 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -3 Query: 458 EIAKLDPKKTVFFDDSPRNIASGKSAGFHTVIVGSSALVP---GADVALESIHNI 303 ++ L P++ V +D+P + SG +AG H + V + A P D+ L S+ I Sbjct: 149 QLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQI 203
>YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-)| Length = 199 Score = 32.3 bits (72), Expect = 0.67 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -3 Query: 470 QAVVEIAKLDPKKTVFFDDSPRNIASGKSAGFHTVIVGSSALVP 339 Q V++ P TVFFDD+ NI G +++V +P Sbjct: 148 QHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTTIP 191
>YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-)| Length = 199 Score = 32.3 bits (72), Expect = 0.67 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -3 Query: 470 QAVVEIAKLDPKKTVFFDDSPRNIASGKSAGFHTVIVGSSALVP 339 Q V++ P TVFFDD+ NI G +++V +P Sbjct: 148 QHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTTIP 191
>P1254_THEMA (Q9X0Y1) Phosphorylated carbohydrates phosphatase TM1254 (EC| 3.1.3.-) Length = 216 Score = 30.4 bits (67), Expect = 2.6 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Frame = -3 Query: 464 VVEIAKLDPKKTVFFDDSPRNIASGKSAGF-------HTVIVGSSALVPGADVALESIHN 306 V+E + P+K V F+DS + + KSAG H++ G + L GA VAL Sbjct: 149 VLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGA-VALVKPEE 207 Query: 305 IREALPEL 282 I L E+ Sbjct: 208 ILNVLKEV 215
>GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18) (PGPase2)| (PGP 2) Length = 226 Score = 30.4 bits (67), Expect = 2.6 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = -3 Query: 446 LDPKKTVFFDDSPRNIASGKSAGFHTVIVGSSALVP-------GADVALESIHNIREAL 291 +DP + +F D R+I SG+ AG T V + P GADV ++ + + L Sbjct: 161 IDPSRVLFIGDDLRDIESGRDAGTKTAAVRYGYIHPEDNPAHWGADVIVDHPRELIDVL 219
>YDX1_SCHPO (O14165) Hypothetical protein C4C5.01 in chromosome I| Length = 246 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -3 Query: 446 LDPKKTVFFDDSPRNIASGKSAGFHTVIVGSSALVP-GADVALESIHNIREALPELWE 276 L P + + F+DS + S K+AG H + V +A+ D E + + E LP L E Sbjct: 175 LTPSQCIAFEDSIPGVKSAKAAGMHVIWVPDAAIKNLVGDQLNEIVDSQCETLPSLSE 232
>GPP1_YEAST (P41277) (DL)-glycerol-3-phosphatase 1 (EC 3.1.3.-)| Length = 249 Score = 29.6 bits (65), Expect = 4.4 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 7/59 (11%) Frame = -3 Query: 455 IAKLDPKKT--VFFDDSPRNIASGKSAGFHTVIVGSS-----ALVPGADVALESIHNIR 300 I + DP K+ V F+D+P IA+GK+AG V + ++ G D+ +++ +IR Sbjct: 163 INEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEKGCDIIVKNHESIR 221
>TTBK2_MOUSE (Q3UVR3) Tau-tubulin kinase 2| Length = 1243 Score = 29.3 bits (64), Expect = 5.7 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 17/65 (26%) Frame = -1 Query: 484 PSSPCKPWWRSPSSTPR-----RQCSSTTARATSPRENRQASIP------------SS*G 356 P SP P RSPS++PR R SS+ +RA P ++++S P S Sbjct: 1140 PKSPVVPR-RSPSASPRSSSLPRTSSSSPSRAGRPHHDQRSSSPHLGRSKSPPSHSGSSS 1198 Query: 355 ARRSC 341 +RRSC Sbjct: 1199 SRRSC 1203
>PGMB_BACSU (O06995) Putative beta-phosphoglucomutase (EC 5.4.2.6) (Beta-PGM)| Length = 226 Score = 29.3 bits (64), Expect = 5.7 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = -3 Query: 446 LDPKKTVFFDDSPRNIASGKSAGFHTVIVGSSALVPGADVALESIHNIR-EALPELWE 276 + P +D+ I++ KSAG V VG + GAD+ + ++ E L E WE Sbjct: 160 VSPADCAAIEDAEAGISAIKSAGMFAVGVGQGQPMLGADLVVRQTSDLTLELLHEEWE 217
>TTBK2_HUMAN (Q6IQ55) Tau-tubulin kinase 2 (EC 2.7.11.1)| Length = 1244 Score = 29.3 bits (64), Expect = 5.7 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 17/65 (26%) Frame = -1 Query: 484 PSSPCKPWWRSPSSTPR-----RQCSSTTARATSPRENRQASIP------------SS*G 356 P SP P RSPS++PR R SS+ +RA P ++++S P S Sbjct: 1141 PKSPVVPR-RSPSASPRSSSLPRTSSSSPSRAGRPHHDQRSSSPHLGRSKSPPSHSGSSS 1199 Query: 355 ARRSC 341 +RRSC Sbjct: 1200 SRRSC 1204
>GPP2_YEAST (P40106) (DL)-glycerol-3-phosphatase 2 (EC 3.1.3.-)| Length = 250 Score = 29.3 bits (64), Expect = 5.7 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 7/59 (11%) Frame = -3 Query: 455 IAKLDPKKT--VFFDDSPRNIASGKSAGFHTVIVGSS-----ALVPGADVALESIHNIR 300 I + DP K+ V F+D+P IA+GK+AG + + ++ G D+ +++ +IR Sbjct: 164 INEQDPSKSKVVVFEDAPAGIAAGKAAGCKIIGIATTFDLDFLKEKGCDIIVKNHESIR 222
>VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1)| Length = 523 Score = 28.9 bits (63), Expect = 7.5 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 Query: 35 FRSHHQHTSSRPVHNTYAFISH 100 + SHH H+ P+HNT ++ S+ Sbjct: 371 YNSHHHHSLHHPLHNTTSYFSN 392
>DPOL_ADE07 (P05664) DNA polymerase (EC 2.7.7.7)| Length = 1122 Score = 28.9 bits (63), Expect = 7.5 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -3 Query: 449 KLDPKKTVFFDDSPRNIASGKSAGFHTVIVGSSALVPGADVALESIHNI-REALPE 285 KLD KK VF D ++ G SAG TV + SS+ + +++ E + RE LP+ Sbjct: 774 KLDNKKIVFSDQMDESLIKGISAG--TVNIKSSSFLETDNLSAEVMPAFEREYLPQ 827
>MED1_YEAST (Q12321) RNA polymerase II mediator complex subunit 1| Length = 566 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -1 Query: 481 SSPCKPWWRSPSSTPRRQCSSTTARATS-PRENRQASIPSS*GARRSCPGRTWR 323 SS +P +++P ST + +S+T+ PR NR S+ + RRS ++ R Sbjct: 368 SSELEPDYQAPFSTSTKDKNSSTSNTEPIPRSNRHGSVVEASRRRRSSTNKSKR 421
>K0406_MOUSE (Q91V83) Protein KIAA0406 homolog| Length = 1085 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -3 Query: 368 VIVGSSALVPGADVALESIHNIREALPELWEAGGD 264 V+VGS AL AD+ ES+H++ +LP L D Sbjct: 363 VVVGSRAL---ADILSESLHSLATSLPRLMNTQDD 394
>DPOL_ADE04 (P87503) DNA polymerase (EC 2.7.7.7)| Length = 1193 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -3 Query: 449 KLDPKKTVFFDDSPRNIASGKSAGFHTVIVGSSALVPGADVALESIHNI-REALPE 285 KLD KK VF D + G SAG TV + SS+ + +++ E + RE LP+ Sbjct: 845 KLDNKKIVFSDQMDEGLLKGISAG--TVNIKSSSFLETDNLSAEVMPAFEREYLPQ 898
>ATC3_YEAST (P39524) Probable phospholipid-transporting ATPase DRS2 (EC| 3.6.3.1) Length = 1355 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 368 VIVGSSALVPGA-DVALESIHNIREALPELWEAGGDHVEAAVGI 240 +++G++A+ D E+IH ++EA ++W GD E A+ I Sbjct: 802 ILIGATAIEDKLQDGVPETIHTLQEAGIKIWVLTGDRQETAINI 845
>MEAA_METEX (Q49115) Protein meaA| Length = 688 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/53 (39%), Positives = 27/53 (50%) Frame = -3 Query: 401 IASGKSAGFHTVIVGSSALVPGADVALESIHNIREALPELWEAGGDHVEAAVG 243 +A K G H ++G S L G+ V L +RE +L EAG DHV VG Sbjct: 574 VAKAKERGAH--VIGLSVL-SGSHVPL-----VREVKAKLREAGLDHVPVVVG 618 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,409,843 Number of Sequences: 219361 Number of extensions: 1008705 Number of successful extensions: 3974 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3760 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3930 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
