ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart08a10 |
|---|---|
| Clone Library Name | barley_pub |
>APGM_METKA (P58813) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) Length = 422 Score = 39.7 bits (91), Expect = 0.003 Identities = 29/99 (29%), Positives = 38/99 (38%) Frame = -1 Query: 422 TPVEYGDHSFEPVPFAICRLRDFVGAIGEDNVMNTPLDDFPLPSVKSGEDLTDDSEPAER 243 TPV GDH+ +PVP AI + A R Sbjct: 359 TPVAVGDHTADPVPVAIW------------------------------------TADARR 382 Query: 242 KPEERKAFSGDKVCEYTEIAAARGCLGRFPGSEMMGIIK 126 P E EY EI+AARGCLGRF G ++ +++ Sbjct: 383 DPVE----------EYDEISAARGCLGRFSGLHLLNVLR 411
>PBP2_ECOLI (P0AD65) Penicillin-binding protein 2 (PBP-2)| Length = 633 Score = 31.2 bits (69), Expect = 1.0 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = -1 Query: 335 DNVMNTPLDDFPLPSVKSGEDLTDDSEPAERKPEERK-AFSGDKV-CEYTEIAAARGCLG 162 DNV T L +++S DLTDD A RK R F+ V TE+ AR + Sbjct: 96 DNVQQT------LDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVN 149 Query: 161 --RFPGSEMMGIIKKF 120 RFPG E+ G +++ Sbjct: 150 QYRFPGVEVKGYKRRY 165
>PBP2_ECOL6 (P0AD66) Penicillin-binding protein 2 (PBP-2)| Length = 633 Score = 31.2 bits (69), Expect = 1.0 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = -1 Query: 335 DNVMNTPLDDFPLPSVKSGEDLTDDSEPAERKPEERK-AFSGDKV-CEYTEIAAARGCLG 162 DNV T L +++S DLTDD A RK R F+ V TE+ AR + Sbjct: 96 DNVQQT------LDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVN 149 Query: 161 --RFPGSEMMGIIKKF 120 RFPG E+ G +++ Sbjct: 150 QYRFPGVEVKGYKRRY 165
>PBP2_ECO57 (P0AD67) Penicillin-binding protein 2 (PBP-2)| Length = 633 Score = 31.2 bits (69), Expect = 1.0 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = -1 Query: 335 DNVMNTPLDDFPLPSVKSGEDLTDDSEPAERKPEERK-AFSGDKV-CEYTEIAAARGCLG 162 DNV T L +++S DLTDD A RK R F+ V TE+ AR + Sbjct: 96 DNVQQT------LDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVN 149 Query: 161 --RFPGSEMMGIIKKF 120 RFPG E+ G +++ Sbjct: 150 QYRFPGVEVKGYKRRY 165
>AUR1_SCHPO (Q10142) Aureobasidin A resistance protein homolog| Length = 422 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 18 FYSYRIKLVLCRLSL-RHYYKDQVQG*ALIILCF 116 FY Y + L C + L HY+ D V G L I+CF Sbjct: 277 FYGYVLWLCWCTMYLTHHYFVDLVGGMCLAIICF 310
>SCRB1_MOUSE (Q61009) Scavenger receptor class B member 1 (SRB1) (SR-BI)| Length = 509 Score = 25.4 bits (54), Expect(2) = 3.1 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 183 SNLGVFTHFIATKSFTLLRLAFRW 254 SN GVFT F ++F+ + L +W Sbjct: 214 SNSGVFTVFTGVQNFSRIHLVDKW 237 Score = 22.7 bits (47), Expect(2) = 3.1 Identities = 6/16 (37%), Positives = 12/16 (75%) Frame = +1 Query: 370 HIANGTGSKLWSPYST 417 ++ NGT ++W+P+ T Sbjct: 252 NMINGTSGQMWAPFMT 267
>ADA15_HUMAN (Q13444) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) Length = 814 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 320 TPLDDFPLPSVKSGEDLTDDSEPAERKPEERKAFSGD 210 +PL +PLP++ E+ +SE A R+P E + D Sbjct: 16 SPLPSWPLPNIGGTEEQQAESEKAPREPLEPQVLQDD 52
>HDAC1_STRPU (P56518) Histone deacetylase 1 (HD1)| Length = 576 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = -1 Query: 317 PLDDFPLPSVKSGEDLTDDS-------EPAERKPEERKAFSGDKVCEYTEIAA 180 P+D P P K ED + S +PAE++P E +A D V +++A Sbjct: 481 PMDTTPAPPPKKSEDKPEASKPTEVKAKPAEKEPGEGEASPADLVVPVPKVSA 533
>APGM1_METTH (O27628) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1) (BPG-independent PGAM 1) (aPGAM 1) Length = 409 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -1 Query: 275 DLTDDSEP-AERKPEERKAFSGDKVCEYTEIAAARGCLGRFPGSEMMGIIKKFMKAK 108 D T D P A PE R D V ++E AAA G L R GS++M I+ M K Sbjct: 352 DHTGDPVPIAITGPEVRV----DDVTSFSERAAAAGGLCRIRGSDVMDILLDLMNKK 404
>YGK8_YEAST (P53139) Hypothetical 16.0 kDa protein in TAF60-MLC1 intergenic| region Length = 140 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Frame = -1 Query: 338 EDNVMNTPLDDFPLPSV--KSGEDLTDDSEPAERK--PEERKAFSGDKVCEYTEIAAARG 171 +D T L +P V K G LTD S+P++ K P+E + +K + T +G Sbjct: 44 KDKKKKTQLKSTTVPVVQRKEGSKLTDTSDPSKNKVSPKEAARLAAEKRFQETNEKYNKG 103 Query: 170 CLGR 159 LG+ Sbjct: 104 ELGK 107
>IXR1_YEAST (P33417) Intrastrand crosslink recognition protein| (Structure-specific recognition protein) (SSRP) Length = 597 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 290 PKAAGNRRGGCSSHCPPQLLPRNLSAGISQTGQVRSCGLRTQQE 421 P +AGN G ++ P LLP NL ++ Q L+ QQ+ Sbjct: 257 PSSAGNAAGNANTATHPGLLPPNLQPQLTHHQQQMQQQLQLQQQ 300
>SCRB1_BOVIN (O18824) Scavenger receptor class B member 1 (SRB1) (SR-BI)| Length = 509 Score = 23.9 bits (50), Expect(2) = 8.5 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +3 Query: 183 SNLGVFTHFIATKSFTLLRLAFRW 254 S+ G+FT F K+F+ + L +W Sbjct: 214 SDSGLFTVFTGVKNFSRIHLVDKW 237 Score = 22.7 bits (47), Expect(2) = 8.5 Identities = 6/16 (37%), Positives = 12/16 (75%) Frame = +1 Query: 370 HIANGTGSKLWSPYST 417 ++ NGT ++W+P+ T Sbjct: 252 NMINGTSGQMWAPFMT 267
>KUP_CORGL (Q8NSG3) Probable potassium transport system protein kup| Length = 624 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +1 Query: 25 PIGLSWFCVVYPFVIIT 75 PI ++WFCVV P +I+T Sbjct: 247 PIRVAWFCVVMPALILT 263
>APGM_METMA (Q8PX04) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) Length = 397 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Frame = -1 Query: 422 TPVEYGDHSFEPVPFAICRL----RDFVGAIGEDNVMN 321 TP+ H+ +P+PFAI R D V A E++V N Sbjct: 342 TPISVKTHTRDPIPFAIYRTDKPETDNVEAFDEESVKN 379
>IGA4_HAEIN (P45386) Immunoglobulin A1 protease precursor (EC 3.4.21.72) (IGA1| protease) Length = 1849 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 277 SPDLTEGSGKSSRGVFITLSSPIAPTKSLSRHIANGTG 390 S DLT+G K + G ITL + T +L+ HI G G Sbjct: 379 SVDLTDGKDKPNHGKSITLKG--SGTLTLNNHIDQGAG 414
>RL37A_YEAST (P49166) 60S ribosomal protein L37-A (L35) (YP55)| Length = 87 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = -3 Query: 399 QLRTCPVCDMPAERFRGSNWGGQCDEHPPRRFPAAFG*VR------RRFN**FRT 253 Q +TC C PA + R NWG + RR G +R RRF F+T Sbjct: 29 QKKTCSSCGYPAAKTRSYNWGAKA----KRRHTTGTGRMRYLKHVSRRFKNGFQT 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,722,893 Number of Sequences: 219361 Number of extensions: 1341231 Number of successful extensions: 4074 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3917 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4068 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
