ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart08a08 |
|---|---|
| Clone Library Name | barley_pub |
>TF2B_RAT (P62916) Transcription initiation factor IIB (General transcription| factor TFIIB) (RNA polymerase II alpha initiation factor) Length = 316 Score = 31.2 bits (69), Expect = 0.62 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 101 GSLLCPECGFVI*RRHLSAGQNWFHF 24 G ++CPECG V+ R + G W F Sbjct: 30 GDMICPECGLVVGDRVIDVGSEWRTF 55
>TF2B_PONPY (Q5R886) Transcription initiation factor IIB (General transcription| factor TFIIB) Length = 316 Score = 31.2 bits (69), Expect = 0.62 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 101 GSLLCPECGFVI*RRHLSAGQNWFHF 24 G ++CPECG V+ R + G W F Sbjct: 30 GDMICPECGLVVGDRVIDVGSEWRTF 55
>TF2B_MOUSE (P62915) Transcription initiation factor IIB (General transcription| factor TFIIB) (RNA polymerase II alpha initiation factor) Length = 316 Score = 31.2 bits (69), Expect = 0.62 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 101 GSLLCPECGFVI*RRHLSAGQNWFHF 24 G ++CPECG V+ R + G W F Sbjct: 30 GDMICPECGLVVGDRVIDVGSEWRTF 55
>TF2B_HUMAN (Q00403) Transcription initiation factor IIB (General transcription| factor TFIIB) (S300-II) Length = 316 Score = 31.2 bits (69), Expect = 0.62 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 101 GSLLCPECGFVI*RRHLSAGQNWFHF 24 G ++CPECG V+ R + G W F Sbjct: 30 GDMICPECGLVVGDRVIDVGSEWRTF 55
>MSK1_TOBAC (Q40518) Shaggy-related protein kinase NtK-1 (EC 2.7.11.1)| Length = 409 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 239 LSFLLHSYVVCLLHCCFTGTRSDQCRMYLVCAIEPIP 129 + L H VVCL HC F+ T D+ +YL +E +P Sbjct: 118 MRLLDHPNVVCLKHCFFSTTEKDE--VYLNLVLEYVP 152
>CKX7_ARATH (Q9FUJ1) Cytokinin dehydrogenase 7 (EC 1.5.99.12) (Cytokinin| oxidase 7) (CKO7) (AtCKX7) (AtCKX5) Length = 524 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 397 NGAETKGGWPSQGEVECHEEEPREAATTCSSCDHCLK 287 NGA+ GWP+ HE +P +C S +CL+ Sbjct: 281 NGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLE 317
>SAMD8_MOUSE (Q9DA37) Sphingomyelin synthase-related 1 (Sterile alpha motif| domain-containing 8) Length = 478 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = -2 Query: 289 KHAAKRLPDAV*YIL*SCLFFYTLMWFVSYIAVLLEQEVTNVE 161 KH+A+RL + SC++ + + F S+I V++ + V +++ Sbjct: 202 KHSARRLDPEYWKTILSCVYVFIVFGFTSFIMVIVHERVPDMQ 244
>TF2B_CAEEL (O16991) Transcription initiation factor IIB (General transcription| factor TFIIB) Length = 306 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -1 Query: 101 GSLLCPECGFVI*RRHLSAGQNWFHF 24 G L+CP CG V+ R + G W F Sbjct: 22 GDLVCPACGLVVGDRLVDVGTEWRSF 47
>ITB8_RABIT (P26013) Integrin beta-8 precursor| Length = 768 Score = 24.6 bits (52), Expect(2) = 4.0 Identities = 10/39 (25%), Positives = 18/39 (46%) Frame = -1 Query: 194 CFTGTRSDQCRMYLVCAIEPIPNESGFWLGLGSLLCPEC 78 CF+G D+C+ A + ++ G G+ +C C Sbjct: 574 CFSGWEGDRCQCPSAAAQHCVNSKGQVCSGRGTCVCGRC 612 Score = 22.3 bits (46), Expect(2) = 4.0 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 14/46 (30%) Frame = -2 Query: 370 PSQGEVECHEEEPREAATTCSS--------------CDHCLKHAAK 275 P E +CH+EE + + C + C CL H K Sbjct: 492 PQCQESQCHQEEAQSPSQGCKAHEDQPVCSGRGVCVCGKCLCHKMK 537
>SAMD8_HUMAN (Q96LT4) Sphingomyelin synthase-related 1 (Sterile alpha motif| domain-containing 8) Length = 415 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/43 (25%), Positives = 25/43 (58%) Frame = -2 Query: 289 KHAAKRLPDAV*YIL*SCLFFYTLMWFVSYIAVLLEQEVTNVE 161 KH+ +RL + SC++ + + F S+I V++ + V +++ Sbjct: 139 KHSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQ 181
>KSG7_ARATH (Q39011) Shaggy-related protein kinase eta (EC 2.7.11.1) (ASK-eta)| (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1) Length = 380 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 224 HSYVVCLLHCCFTGTRSDQCRMYLVCAIEP 135 H VVCL HC F+ T D+ + LV P Sbjct: 90 HPNVVCLKHCFFSTTSKDELFLNLVMEYVP 119
>TF2B_XENLA (P29054) Transcription initiation factor IIB (General transcription| factor TFIIB) Length = 316 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -1 Query: 101 GSLLCPECGFVI*RRHLSAGQNWFHF 24 G ++C ECG V+ R + G W F Sbjct: 30 GDMICSECGLVVGDRVIDVGSEWRTF 55
>TF2B_DROME (P29052) Transcription initiation factor IIB (General transcription| factor TFIIB) Length = 315 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -1 Query: 101 GSLLCPECGFVI*RRHLSAGQNWFHF 24 G ++C ECG V+ R + G W F Sbjct: 29 GDMICSECGLVVGDRVIDVGSEWRTF 54
>VCX3_HUMAN (Q9NNX9) Variable charge X-linked protein 3 (VCX-A protein)| (Variably charged protein X-A) (Variable charge protein on X with eight repeats) (VCX-8r) Length = 186 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 387 KPKVAGPPKAKSNAMKRNQGKQQQPAVP 304 KP+ +GPP + A KR Q P+ P Sbjct: 4 KPRASGPPAKATEAGKRKSSSQPSPSDP 31
>VCX2_HUMAN (Q9H322) Variable charge X-linked protein 2 (VCX-B protein)| (Variably charged protein X-B) (Variable charge protein on X with two repeats) (VCX-2r) Length = 139 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 387 KPKVAGPPKAKSNAMKRNQGKQQQPAVP 304 KP+ +GPP + A KR Q P+ P Sbjct: 4 KPRASGPPAKATEAGKRKSSSQPSPSDP 31
>VCXC_HUMAN (Q9H321) VCX-C protein (Variably charged protein X-C)| Length = 216 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 387 KPKVAGPPKAKSNAMKRNQGKQQQPAVP 304 KP+ +GPP + A KR Q P+ P Sbjct: 4 KPRASGPPAKATEAGKRKSSSQPSPSDP 31
>VCX1_HUMAN (Q9H320) Variable charge X-linked protein 1 (VCX-B1 protein)| (Variably charged protein X-B1) (Variable charge protein on X with ten repeats) (VCX-10r) Length = 206 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 387 KPKVAGPPKAKSNAMKRNQGKQQQPAVP 304 KP+ +GPP + A KR Q P+ P Sbjct: 4 KPRASGPPAKATEAGKRKSSSQPSPSDP 31
>NUOG_BLOFL (Q7VRV7) NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 941 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -2 Query: 226 YTLMWFVSYIAVLLEQEVT--NVECIWFVRLNPYLM 125 YT W V+ L E T NVECI LNPY M Sbjct: 838 YTNKWIVAPYWHLFGSEETSQNVECIKNCMLNPYAM 873
>H1B_CHITE (P40276) Histone H1B| Length = 232 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -3 Query: 396 TEQKPKVAGPPKAKSNAMKRNQGKQQQPA 310 TE KPK A PKAK A ++ ++PA Sbjct: 200 TETKPKRAAAPKAKKPAAEKKPKAAKKPA 228
>FBRL_DROME (Q9W1V3) Fibrillarin| Length = 344 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = +2 Query: 218 KSVKEKTTSQDVSYSVW*PFRGVFQAVIAG 307 K + +T + + Y VW PFR A + G Sbjct: 146 KRISVETNGEKIEYRVWNPFRSKLAAAVLG 175
>ATCX_SCHPO (Q09891) Putative phospholipid-transporting ATPase 1 (EC 3.6.3.1)| Length = 1402 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 287 FQAVIAGTAGCCCFPWFLFM 346 F AV+ GT C FP FLFM Sbjct: 1260 FWAVLCGTIVSCLFPKFLFM 1279
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +2 Query: 200 VRDKPHKSVKEKTTSQDVSYSVW*P 274 VR +P K VKE T V+Y W P Sbjct: 190 VRLQPQKQVKENKTQPPVAYQYWPP 214
>DRL4_ARATH (Q9SX38) Putative disease resistance protein At1g50180| Length = 839 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -1 Query: 167 CRMYLVCAIEPIPNESGFWLGLGSLLCPECGFV 69 C + L +E +P E F LG+L +CG V Sbjct: 694 CELELFLKLEKLPGEQSFSSDLGALRLWQCGLV 726
>TRIM1_HUMAN (Q9UJV3) Midline-2 (Midline defect 2) (Tripartite motif protein 1)| (Midin-2) (RING finger protein 60) Length = 715 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 5/26 (19%) Frame = -2 Query: 349 CHEEEPREAATTC-----SSCDHCLK 287 C ++ PR+A TC S CD CL+ Sbjct: 122 CEQDPPRDAVKTCITCEVSYCDRCLR 147
>TRIM1_MOUSE (Q9QUS6) Midline-2 (Midline defect 2) (Tripartite motif protein 1)| Length = 685 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 5/26 (19%) Frame = -2 Query: 349 CHEEEPREAATTC-----SSCDHCLK 287 C ++ PR+A TC S CD CL+ Sbjct: 122 CEQDPPRDAVKTCITCEVSYCDRCLR 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,415,865 Number of Sequences: 219361 Number of extensions: 1149950 Number of successful extensions: 3275 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3275 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
