Clone Name | rbart08a08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 150 aaccaaatacattctacattggtcactt 177 |||||||||||||||||||||||||||| Sbjct: 2858398 aaccaaatacattctacattggtcactt 2858371
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085L11 Length = 148142 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 150 aaccaaatacattctacattggtcactt 177 |||||||||||||||||||||||||||| Sbjct: 101879 aaccaaatacattctacattggtcactt 101852
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046E09 Length = 146776 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 150 aaccaaatacattctacattggtcactt 177 |||||||||||||||||||||||||||| Sbjct: 18544 aaccaaatacattctacattggtcactt 18517
>dbj|AK099462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023F20, full insert sequence Length = 1616 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 150 aaccaaatacattctacattggtcactt 177 |||||||||||||||||||||||||||| Sbjct: 1463 aaccaaatacattctacattggtcactt 1436
>dbj|AK061616.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-C07, full insert sequence Length = 643 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 150 aaccaaatacattctacattggtcactt 177 |||||||||||||||||||||||||||| Sbjct: 509 aaccaaatacattctacattggtcactt 482
>gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosome ul, complete sequence Length = 146640 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 192 acagcaatgtaagagacaaaccacat 217 |||||||||||| ||||||||||||| Sbjct: 44648 acagcaatgtaaaagacaaaccacat 44623
>ref|XM_709545.1| Candida albicans SC5314 hypothetical protein (CaO19.8948), mRNA Length = 1818 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gaacttgaatttttgttcaaa 25 ||||||||||||||||||||| Sbjct: 1328 gaacttgaatttttgttcaaa 1308
>ref|XM_709449.1| Candida albicans SC5314 hypothetical protein (CaO19.1368), mRNA Length = 1827 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gaacttgaatttttgttcaaa 25 ||||||||||||||||||||| Sbjct: 1337 gaacttgaatttttgttcaaa 1317
>emb|Z99286.1|CEY7A9C Caenorhabditis elegans YAC Y7A9C, complete sequence Length = 26821 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 cttgaatttttgttcaaaaat 28 ||||||||||||||||||||| Sbjct: 21064 cttgaatttttgttcaaaaat 21044 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ttgaatttttgttcaaaaat 28 |||||||||||||||||||| Sbjct: 21463 ttgaatttttgttcaaaaat 21482
>emb|AJ889955.1| Inocybe napipes partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 25S rRNA gene, specimen voucher MC01-516 Length = 748 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 actgcaggttgttgctgcttc 328 ||||||||||||||||||||| Sbjct: 528 actgcaggttgttgctgcttc 548
>emb|BX571739.9| Zebrafish DNA sequence from clone DKEYP-75C7 in linkage group 15, complete sequence Length = 139312 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 acttgaatttttgttcaaaaa 27 ||||||||||||||||||||| Sbjct: 76647 acttgaatttttgttcaaaaa 76627
>gb|AE011745.1| Xanthomonas axonopodis pv. citri str. 306, section 123 of 469 of the complete genome Length = 12295 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 tggcattcgacttcgccttgg 365 ||||||||||||||||||||| Sbjct: 5662 tggcattcgacttcgccttgg 5682
>gb|AC012103.6| Homo sapiens, clone RP11-44D19, complete sequence Length = 157322 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 caaaaatggaaccaattttgt 42 ||||||||||||||||||||| Sbjct: 41205 caaaaatggaaccaattttgt 41225
>gb|AC091484.8| Mus musculus strain C57BL/6J chromosome 17 clone rp23-386a1, complete sequence Length = 205343 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgaatttttgttcaaaaatgg 30 ||||||||||||||||||||| Sbjct: 197785 tgaatttttgttcaaaaatgg 197805
>gb|AC159707.2| Mus musculus chromosome 1, clone RP24-176K12, complete sequence Length = 79081 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 actgcaggttgttgctgcttccct 331 |||||||||| ||||||||||||| Sbjct: 15210 actgcaggttcttgctgcttccct 15187
>emb|AL021180.1|CEY44F5A Caenorhabditis elegans YAC Y44F5A, complete sequence Length = 6146 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 ttgaatttttgttcaaaaatggaa 32 ||||||||||||| |||||||||| Sbjct: 4288 ttgaatttttgttgaaaaatggaa 4311
>gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, complete sequence Length = 157606 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tacattggtcacttcttgtt 183 |||||||||||||||||||| Sbjct: 134039 tacattggtcacttcttgtt 134020
>gb|AC023904.10| Homo sapiens chromosome 10 clone RP11-369L1, complete sequence Length = 190712 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aatttttgttcaaaaatgga 31 |||||||||||||||||||| Sbjct: 130643 aatttttgttcaaaaatgga 130662
>gb|AC012463.4|AC012463 Genomic sequence for Arabidopsis thaliana BAC T2E6 from chromosome I, complete sequence Length = 95816 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ttgaatttttgttcaaaaat 28 |||||||||||||||||||| Sbjct: 77843 ttgaatttttgttcaaaaat 77862
>gb|AY107886.1| Zea mays PCO083851 mRNA sequence Length = 862 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 96 agatcctagtcctaaccaaaaaccactctcat 127 |||||||| |||||||||||||| | |||||| Sbjct: 843 agatcctaatcctaaccaaaaacaattctcat 812
>gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thaliana chromosome 1, complete sequence Length = 171769 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ttgaatttttgttcaaaaat 28 |||||||||||||||||||| Sbjct: 694 ttgaatttttgttcaaaaat 713 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,205,288 Number of Sequences: 3902068 Number of extensions: 4205288 Number of successful extensions: 80794 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80736 Number of HSP's gapped (non-prelim): 58 length of query: 398 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 376 effective length of database: 17,147,199,772 effective search space: 6447347114272 effective search space used: 6447347114272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)