ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
2dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
3dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
4dbj|AK099462.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
5dbj|AK061616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
6gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosom... 44 0.34
7ref|XM_709545.1| Candida albicans SC5314 hypothetical protein (C... 42 1.3
8ref|XM_709449.1| Candida albicans SC5314 hypothetical protein (C... 42 1.3
9emb|Z99286.1|CEY7A9C Caenorhabditis elegans YAC Y7A9C, complete ... 42 1.3
10emb|AJ889955.1| Inocybe napipes partial 18S rRNA gene, ITS1, 5.8... 42 1.3
11emb|BX571739.9| Zebrafish DNA sequence from clone DKEYP-75C7 in ... 42 1.3
12gb|AE011745.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.3
13gb|AC012103.6| Homo sapiens, clone RP11-44D19, complete sequence 42 1.3
14gb|AC091484.8| Mus musculus strain C57BL/6J chromosome 17 clone ... 42 1.3
15gb|AC159707.2| Mus musculus chromosome 1, clone RP24-176K12, com... 40 5.3
16emb|AL021180.1|CEY44F5A Caenorhabditis elegans YAC Y44F5A, compl... 40 5.3
17gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, comp... 40 5.3
18gb|AC023904.10| Homo sapiens chromosome 10 clone RP11-369L1, com... 40 5.3
19gb|AC012463.4|AC012463 Genomic sequence for Arabidopsis thaliana... 40 5.3
20gb|AY107886.1| Zea mays PCO083851 mRNA sequence 40 5.3
21gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thali... 40 5.3

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 150     aaccaaatacattctacattggtcactt 177
               ||||||||||||||||||||||||||||
Sbjct: 2858398 aaccaaatacattctacattggtcactt 2858371



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>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0085L11
          Length = 148142

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 150    aaccaaatacattctacattggtcactt 177
              ||||||||||||||||||||||||||||
Sbjct: 101879 aaccaaatacattctacattggtcactt 101852



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>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046E09
          Length = 146776

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 150   aaccaaatacattctacattggtcactt 177
             ||||||||||||||||||||||||||||
Sbjct: 18544 aaccaaatacattctacattggtcactt 18517



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>dbj|AK099462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023F20, full
            insert sequence
          Length = 1616

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 150  aaccaaatacattctacattggtcactt 177
            ||||||||||||||||||||||||||||
Sbjct: 1463 aaccaaatacattctacattggtcactt 1436



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>dbj|AK061616.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-C07, full
           insert sequence
          Length = 643

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 150 aaccaaatacattctacattggtcactt 177
           ||||||||||||||||||||||||||||
Sbjct: 509 aaccaaatacattctacattggtcactt 482



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>gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosome ul, complete
             sequence
          Length = 146640

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 192   acagcaatgtaagagacaaaccacat 217
             |||||||||||| |||||||||||||
Sbjct: 44648 acagcaatgtaaaagacaaaccacat 44623



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>ref|XM_709545.1| Candida albicans SC5314 hypothetical protein (CaO19.8948), mRNA
          Length = 1818

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    gaacttgaatttttgttcaaa 25
            |||||||||||||||||||||
Sbjct: 1328 gaacttgaatttttgttcaaa 1308



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>ref|XM_709449.1| Candida albicans SC5314 hypothetical protein (CaO19.1368), mRNA
          Length = 1827

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    gaacttgaatttttgttcaaa 25
            |||||||||||||||||||||
Sbjct: 1337 gaacttgaatttttgttcaaa 1317



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>emb|Z99286.1|CEY7A9C Caenorhabditis elegans YAC Y7A9C, complete sequence
          Length = 26821

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     cttgaatttttgttcaaaaat 28
             |||||||||||||||||||||
Sbjct: 21064 cttgaatttttgttcaaaaat 21044



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ttgaatttttgttcaaaaat 28
             ||||||||||||||||||||
Sbjct: 21463 ttgaatttttgttcaaaaat 21482



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>emb|AJ889955.1| Inocybe napipes partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2
           and partial 25S rRNA gene, specimen voucher MC01-516
          Length = 748

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 308 actgcaggttgttgctgcttc 328
           |||||||||||||||||||||
Sbjct: 528 actgcaggttgttgctgcttc 548



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>emb|BX571739.9| Zebrafish DNA sequence from clone DKEYP-75C7 in linkage group 15,
             complete sequence
          Length = 139312

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     acttgaatttttgttcaaaaa 27
             |||||||||||||||||||||
Sbjct: 76647 acttgaatttttgttcaaaaa 76627



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>gb|AE011745.1| Xanthomonas axonopodis pv. citri str. 306,  section 123 of 469 of the
            complete genome
          Length = 12295

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 345  tggcattcgacttcgccttgg 365
            |||||||||||||||||||||
Sbjct: 5662 tggcattcgacttcgccttgg 5682



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>gb|AC012103.6| Homo sapiens, clone RP11-44D19, complete sequence
          Length = 157322

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    caaaaatggaaccaattttgt 42
             |||||||||||||||||||||
Sbjct: 41205 caaaaatggaaccaattttgt 41225



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>gb|AC091484.8| Mus musculus strain C57BL/6J chromosome 17 clone rp23-386a1, complete
              sequence
          Length = 205343

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     tgaatttttgttcaaaaatgg 30
              |||||||||||||||||||||
Sbjct: 197785 tgaatttttgttcaaaaatgg 197805



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>gb|AC159707.2| Mus musculus chromosome 1, clone RP24-176K12, complete sequence
          Length = 79081

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   actgcaggttgttgctgcttccct 331
             |||||||||| |||||||||||||
Sbjct: 15210 actgcaggttcttgctgcttccct 15187



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>emb|AL021180.1|CEY44F5A Caenorhabditis elegans YAC Y44F5A, complete sequence
          Length = 6146

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 9    ttgaatttttgttcaaaaatggaa 32
            ||||||||||||| ||||||||||
Sbjct: 4288 ttgaatttttgttgaaaaatggaa 4311



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>gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, complete sequence
          Length = 157606

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    tacattggtcacttcttgtt 183
              ||||||||||||||||||||
Sbjct: 134039 tacattggtcacttcttgtt 134020



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>gb|AC023904.10| Homo sapiens chromosome 10 clone RP11-369L1, complete sequence
          Length = 190712

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     aatttttgttcaaaaatgga 31
              ||||||||||||||||||||
Sbjct: 130643 aatttttgttcaaaaatgga 130662



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>gb|AC012463.4|AC012463 Genomic sequence for Arabidopsis thaliana BAC T2E6 from chromosome I,
             complete sequence
          Length = 95816

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ttgaatttttgttcaaaaat 28
             ||||||||||||||||||||
Sbjct: 77843 ttgaatttttgttcaaaaat 77862



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>gb|AY107886.1| Zea mays PCO083851 mRNA sequence
          Length = 862

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 96  agatcctagtcctaaccaaaaaccactctcat 127
           |||||||| |||||||||||||| | ||||||
Sbjct: 843 agatcctaatcctaaccaaaaacaattctcat 812



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>gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thaliana chromosome 1,
           complete sequence
          Length = 171769

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   ttgaatttttgttcaaaaat 28
           ||||||||||||||||||||
Sbjct: 694 ttgaatttttgttcaaaaat 713


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,205,288
Number of Sequences: 3902068
Number of extensions: 4205288
Number of successful extensions: 80794
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80736
Number of HSP's gapped (non-prelim): 58
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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